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Conserved domains on  [gi|347602462|sp|F1SRY5|]
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RecName: Full=Ubiquitin carboxyl-terminal hydrolase 37; AltName: Full=Deubiquitinating enzyme 37; AltName: Full=Ubiquitin thioesterase 37; AltName: Full=Ubiquitin-specific-processing protease 37

Protein Classification

PH_USP37_like and Peptidase_C19 domain-containing protein( domain architecture ID 12179965)

PH_USP37_like and Peptidase_C19 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
344-610 5.36e-57

Ubiquitin carboxyl-terminal hydrolase;


:

Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 199.21  E-value: 5.36e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  344 GFSNLGNTCYMNAILQSLFSLQSFAnDLLKQGIPWKKI---PLNALISRRFAHLlVKKDICNSETKKDLLKKVKNAISAT 420
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPFR-DYLLRISPLSEDsryNKDINLLCALRDL-FKALQKNSKSSSVSPKMFKKSLGKL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  421 AERFSGYMQNDAHEFLSQCLDQLKEDMEKLNKTWKTepvpgeenspdvtatrvytCPVITNLEFEVQHSIICKACGEIIP 500
Cdd:pfam00443  80 NPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENE-------------------SLITDLFRGQLKSRLKCLSCGEVSE 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  501 KREQFNDLSIDLPRRKKPLPPRSIQDSLDLFFRAEELE----YSCEKCGGKC-ALVRHKFNRLPRILILHLKRYSFNVal 575
Cdd:pfam00443 141 TFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDdeekYYCDKCGCKQdAIKQLKISRLPPVLIIHLKRFSYNR-- 218
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 347602462  576 SLNNKIGQQVIIPRYLTLSSHCTENTKPPFNLGWS 610
Cdd:pfam00443 219 STWEKLNTEVEFPLELDLSRYLAEELKPKTNNLQD 253
UCH_N pfam16674
N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the ...
3-105 1.15e-53

N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the N-terminus of ubiquitin carboxyl-terminal hydrolase 37 or 26. The function is not known.


:

Pssm-ID: 465227  Cd Length: 102  Bit Score: 181.66  E-value: 1.15e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462    3 PLKIQGPIRIRSMQTGITKWKEGSFEIVEKENKVSLVVHYNTGGiPRIFQLSHNIKNVVLRPSGAKQSRLMLTLQDNSFL 82
Cdd:pfam16674   1 PLKVHGFVQIWSKKTGMSKWKEAFIEIVEKKKKVKLVVYFNTGG-PKTFQLNNNIKSVVLRSYGEKQNRLHLTLKNNSFL 79
                          90       100
                  ....*....|....*....|...
gi 347602462   83 SIDKVPSKDAEEMRLFLDAVHQN 105
Cdd:pfam16674  80 FIDKLSSTDAEELKMFLDRVHQN 102
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
865-952 1.28e-15

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 77.91  E-value: 1.28e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 865 DVLDM-EYTEAEAEELkrnaETGNLPHSYRLISVVSHIGSTSSSGHYISDVYDIKKQAWFTYNDLEVSKIQEASVQSDRD 943
Cdd:cd02257  169 LELDLsPYLSEGEKDS----DSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGS 244
                         90
                 ....*....|.
gi 347602462 944 RS--GYIFFYM 952
Cdd:cd02257  245 LSssAYILFYE 255
 
Name Accession Description Interval E-value
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
344-610 5.36e-57

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 199.21  E-value: 5.36e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  344 GFSNLGNTCYMNAILQSLFSLQSFAnDLLKQGIPWKKI---PLNALISRRFAHLlVKKDICNSETKKDLLKKVKNAISAT 420
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPFR-DYLLRISPLSEDsryNKDINLLCALRDL-FKALQKNSKSSSVSPKMFKKSLGKL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  421 AERFSGYMQNDAHEFLSQCLDQLKEDMEKLNKTWKTepvpgeenspdvtatrvytCPVITNLEFEVQHSIICKACGEIIP 500
Cdd:pfam00443  80 NPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENE-------------------SLITDLFRGQLKSRLKCLSCGEVSE 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  501 KREQFNDLSIDLPRRKKPLPPRSIQDSLDLFFRAEELE----YSCEKCGGKC-ALVRHKFNRLPRILILHLKRYSFNVal 575
Cdd:pfam00443 141 TFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDdeekYYCDKCGCKQdAIKQLKISRLPPVLIIHLKRFSYNR-- 218
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 347602462  576 SLNNKIGQQVIIPRYLTLSSHCTENTKPPFNLGWS 610
Cdd:pfam00443 219 STWEKLNTEVEFPLELDLSRYLAEELKPKTNNLQD 253
UCH_N pfam16674
N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the ...
3-105 1.15e-53

N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the N-terminus of ubiquitin carboxyl-terminal hydrolase 37 or 26. The function is not known.


Pssm-ID: 465227  Cd Length: 102  Bit Score: 181.66  E-value: 1.15e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462    3 PLKIQGPIRIRSMQTGITKWKEGSFEIVEKENKVSLVVHYNTGGiPRIFQLSHNIKNVVLRPSGAKQSRLMLTLQDNSFL 82
Cdd:pfam16674   1 PLKVHGFVQIWSKKTGMSKWKEAFIEIVEKKKKVKLVVYFNTGG-PKTFQLNNNIKSVVLRSYGEKQNRLHLTLKNNSFL 79
                          90       100
                  ....*....|....*....|...
gi 347602462   83 SIDKVPSKDAEEMRLFLDAVHQN 105
Cdd:pfam16674  80 FIDKLSSTDAEELKMFLDRVHQN 102
PH_USP37_like cd13312
Pleckstrin homology-like domain of Ubiquitin carboxyl-terminal hydrolase 37; Members here ...
4-106 3.97e-52

Pleckstrin homology-like domain of Ubiquitin carboxyl-terminal hydrolase 37; Members here include USP37, USP29, and USP26. All of these contain a single PH-like domain. USP37 (also called ubiquitin carboxyl-terminal hydrolase 37, ubiquitin thiolesterase 37, deubiquitinating enzyme 37, and tmp_locus_50) is a deubiquitinase that antagonizes the anaphase-promoting complex (APC/C) during G1/S transition by mediating deubiquitination of cyclin-A (CCNA1 and CCNA2), resulting in promoting S phase entry. USP37 mediates deubiquitination of 'Lys-11'-linked polyubiquitin chains, a specific ubiquitin-linkage type mediated by the APC/C complex and 'Lys-48'-linked polyubiquitin chains in vitro. Phosphorylation at Ser-628 during G1/S phase maximizes the deubiquitinase activity, leading to prevent degradation of cyclin-A (CCNA1 and CCNA2). USP29 (also called ubiquitin carboxyl-terminal hydrolase 29, ubiquitin thiolesterase 29, deubiquitinating enzyme 29, and HOM-TES-84/86) plays a role in apoptosis and oxidative stress. In response to oxidative stress, JTV1 dissociates from the ARS complex, translocates to the nucleus, associates with far upstream element binding protein (FBP) and co-activates the transcription of USP29 which binds to, cleaves poly-ubiquitin chains from, and stabilizes p53 leading to apoptosis. The X-linked deubiquitination enzyme USP26 (also called ubiquitin carboxyl-terminal hydrolase 26, ubiquitin thiolesterase 26, and deubiquitinating enzyme 26) is a regulator of androgen receptor (AR) signaling. It binds to AR using three nuclear receptor interaction motifs (LXXLL, FXXLF and FXXFF) and modulates AR ubiquitination. Polymorphism of Usp26 correlates with idiopathic male infertility. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270122  Cd Length: 103  Bit Score: 177.50  E-value: 3.97e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462   4 LKIQGPIRIRSMQTGITKWKEGSFEIVEKENKVSLVVHYNTGGIPRIFQLSHNIKNVVLRPSGAKQSRLMLTLQDNSFLS 83
Cdd:cd13312    1 LKIHGFVQIWSKKTGMTKWKEAFIEIVEGKKKVKLVVYFKTGGKPKTFQLSNNIKSVVLRSYGGNQNHLHLTLKNNSFLF 80
                         90       100
                 ....*....|....*....|...
gi 347602462  84 IDKVPSKDAEEMRLFLDAVHQNR 106
Cdd:cd13312   81 IDKLSSTDAEQLKEFLDKVHQKK 103
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
344-606 4.40e-34

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 131.45  E-value: 4.40e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSlqsfandllkqgipwkkiplnalisrrfahllvkkdicnsetkkdllkkvknaisataer 423
Cdd:cd02257    1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 424 fsgyMQNDAHEFLSQCLDQLKEDMEKLNKtwktEPVPGEENspdvtatrvyTCPVITNLEFEVQHSIICKACGEIIPKRE 503
Cdd:cd02257   21 ----EQQDAHEFLLFLLDKLHEELKKSSK----RTSDSSSL----------KSLIHDLFGGKLESTIVCLECGHESVSTE 82
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 504 QFNDLSIDLPrrKKPLPPRSIQDSLDLFFRAEELE----YSCEKCGGKCALVRHKFNRLPRILILHLKRYSFNVALSlNN 579
Cdd:cd02257   83 PELFLSLPLP--VKGLPQVSLEDCLEKFFKEEILEgdncYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGT-KE 159
                        250       260
                 ....*....|....*....|....*..
gi 347602462 580 KIGQQVIIPRYLTLSSHCTENTKPPFN 606
Cdd:cd02257  160 KLNTKVSFPLELDLSPYLSEGEKDSDS 186
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
865-952 1.28e-15

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 77.91  E-value: 1.28e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 865 DVLDM-EYTEAEAEELkrnaETGNLPHSYRLISVVSHIGSTSSSGHYISDVYDIKKQAWFTYNDLEVSKIQEASVQSDRD 943
Cdd:cd02257  169 LELDLsPYLSEGEKDS----DSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGS 244
                         90
                 ....*....|.
gi 347602462 944 RS--GYIFFYM 952
Cdd:cd02257  245 LSssAYILFYE 255
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
867-951 1.22e-12

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 69.78  E-value: 1.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  867 LDM-EYTEAEAEELKRNAEtgnlphSYRLISVVSHIGStSSSGHYISDVYDIKKQAWFTYNDLEVSKI-QEASVQSDrdr 944
Cdd:pfam00443 234 LDLsRYLAEELKPKTNNLQ------DYRLVAVVVHSGS-LSSGHYIAYIKAYENNRWYKFDDEKVTEVdEETAVLSS--- 303

                  ....*..
gi 347602462  945 SGYIFFY 951
Cdd:pfam00443 304 SAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
344-517 1.15e-11

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 68.76  E-value: 1.15e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSLQSFANDLLKQGipWKK-------IPLNALISRRFAHLLvkKDICNSETKKDLLKKVKNA 416
Cdd:COG5560  267 GLRNLGNTCYMNSALQCLMHTWELRDYFLSDE--YEEsineenpLGMHGSVASAYADLI--KQLYDGNLHAFTPSGFKKT 342
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 417 ISATAERFSGYMQNDAHEFLSQCLDQLKEDMEKL-NKTWKTEPVPGEENSPDVTAT--------RVYTCPVITNL-EFEV 486
Cdd:COG5560  343 IGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIiKKPYTSKPDLSPGDDVVVKKKakecwwehLKRNDSIITDLfQGMY 422
                        170       180       190
                 ....*....|....*....|....*....|.
gi 347602462 487 QHSIICKACGEIIPKREQFNDLSIDLPRRKK 517
Cdd:COG5560  423 KSTLTCPGCGSVSITFDPFMDLTLPLPVSMV 453
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
890-951 8.45e-07

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 51.73  E-value: 8.45e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 347602462 890 HSYRLISVVSHIGSTSSsGHYISDVYdiKKQAWFTYNDLEVSKIQEASVQSDRDRSGYIFFY 951
Cdd:COG5533  223 TYYDLVGFVLHQGSLEG-GHYIAYVK--KGGKWEKANDSDVTPVSEEEAINEKAKNAYLYFY 281
 
Name Accession Description Interval E-value
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
344-610 5.36e-57

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 199.21  E-value: 5.36e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  344 GFSNLGNTCYMNAILQSLFSLQSFAnDLLKQGIPWKKI---PLNALISRRFAHLlVKKDICNSETKKDLLKKVKNAISAT 420
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPFR-DYLLRISPLSEDsryNKDINLLCALRDL-FKALQKNSKSSSVSPKMFKKSLGKL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  421 AERFSGYMQNDAHEFLSQCLDQLKEDMEKLNKTWKTepvpgeenspdvtatrvytCPVITNLEFEVQHSIICKACGEIIP 500
Cdd:pfam00443  80 NPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENE-------------------SLITDLFRGQLKSRLKCLSCGEVSE 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  501 KREQFNDLSIDLPRRKKPLPPRSIQDSLDLFFRAEELE----YSCEKCGGKC-ALVRHKFNRLPRILILHLKRYSFNVal 575
Cdd:pfam00443 141 TFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDdeekYYCDKCGCKQdAIKQLKISRLPPVLIIHLKRFSYNR-- 218
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 347602462  576 SLNNKIGQQVIIPRYLTLSSHCTENTKPPFNLGWS 610
Cdd:pfam00443 219 STWEKLNTEVEFPLELDLSRYLAEELKPKTNNLQD 253
UCH_N pfam16674
N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the ...
3-105 1.15e-53

N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the N-terminus of ubiquitin carboxyl-terminal hydrolase 37 or 26. The function is not known.


Pssm-ID: 465227  Cd Length: 102  Bit Score: 181.66  E-value: 1.15e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462    3 PLKIQGPIRIRSMQTGITKWKEGSFEIVEKENKVSLVVHYNTGGiPRIFQLSHNIKNVVLRPSGAKQSRLMLTLQDNSFL 82
Cdd:pfam16674   1 PLKVHGFVQIWSKKTGMSKWKEAFIEIVEKKKKVKLVVYFNTGG-PKTFQLNNNIKSVVLRSYGEKQNRLHLTLKNNSFL 79
                          90       100
                  ....*....|....*....|...
gi 347602462   83 SIDKVPSKDAEEMRLFLDAVHQN 105
Cdd:pfam16674  80 FIDKLSSTDAEELKMFLDRVHQN 102
PH_USP37_like cd13312
Pleckstrin homology-like domain of Ubiquitin carboxyl-terminal hydrolase 37; Members here ...
4-106 3.97e-52

Pleckstrin homology-like domain of Ubiquitin carboxyl-terminal hydrolase 37; Members here include USP37, USP29, and USP26. All of these contain a single PH-like domain. USP37 (also called ubiquitin carboxyl-terminal hydrolase 37, ubiquitin thiolesterase 37, deubiquitinating enzyme 37, and tmp_locus_50) is a deubiquitinase that antagonizes the anaphase-promoting complex (APC/C) during G1/S transition by mediating deubiquitination of cyclin-A (CCNA1 and CCNA2), resulting in promoting S phase entry. USP37 mediates deubiquitination of 'Lys-11'-linked polyubiquitin chains, a specific ubiquitin-linkage type mediated by the APC/C complex and 'Lys-48'-linked polyubiquitin chains in vitro. Phosphorylation at Ser-628 during G1/S phase maximizes the deubiquitinase activity, leading to prevent degradation of cyclin-A (CCNA1 and CCNA2). USP29 (also called ubiquitin carboxyl-terminal hydrolase 29, ubiquitin thiolesterase 29, deubiquitinating enzyme 29, and HOM-TES-84/86) plays a role in apoptosis and oxidative stress. In response to oxidative stress, JTV1 dissociates from the ARS complex, translocates to the nucleus, associates with far upstream element binding protein (FBP) and co-activates the transcription of USP29 which binds to, cleaves poly-ubiquitin chains from, and stabilizes p53 leading to apoptosis. The X-linked deubiquitination enzyme USP26 (also called ubiquitin carboxyl-terminal hydrolase 26, ubiquitin thiolesterase 26, and deubiquitinating enzyme 26) is a regulator of androgen receptor (AR) signaling. It binds to AR using three nuclear receptor interaction motifs (LXXLL, FXXLF and FXXFF) and modulates AR ubiquitination. Polymorphism of Usp26 correlates with idiopathic male infertility. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270122  Cd Length: 103  Bit Score: 177.50  E-value: 3.97e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462   4 LKIQGPIRIRSMQTGITKWKEGSFEIVEKENKVSLVVHYNTGGIPRIFQLSHNIKNVVLRPSGAKQSRLMLTLQDNSFLS 83
Cdd:cd13312    1 LKIHGFVQIWSKKTGMTKWKEAFIEIVEGKKKVKLVVYFKTGGKPKTFQLSNNIKSVVLRSYGGNQNHLHLTLKNNSFLF 80
                         90       100
                 ....*....|....*....|...
gi 347602462  84 IDKVPSKDAEEMRLFLDAVHQNR 106
Cdd:cd13312   81 IDKLSSTDAEQLKEFLDKVHQKK 103
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
344-606 4.40e-34

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 131.45  E-value: 4.40e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSlqsfandllkqgipwkkiplnalisrrfahllvkkdicnsetkkdllkkvknaisataer 423
Cdd:cd02257    1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 424 fsgyMQNDAHEFLSQCLDQLKEDMEKLNKtwktEPVPGEENspdvtatrvyTCPVITNLEFEVQHSIICKACGEIIPKRE 503
Cdd:cd02257   21 ----EQQDAHEFLLFLLDKLHEELKKSSK----RTSDSSSL----------KSLIHDLFGGKLESTIVCLECGHESVSTE 82
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 504 QFNDLSIDLPrrKKPLPPRSIQDSLDLFFRAEELE----YSCEKCGGKCALVRHKFNRLPRILILHLKRYSFNVALSlNN 579
Cdd:cd02257   83 PELFLSLPLP--VKGLPQVSLEDCLEKFFKEEILEgdncYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGT-KE 159
                        250       260
                 ....*....|....*....|....*..
gi 347602462 580 KIGQQVIIPRYLTLSSHCTENTKPPFN 606
Cdd:cd02257  160 KLNTKVSFPLELDLSPYLSEGEKDSDS 186
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
344-604 1.70e-27

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 114.66  E-value: 1.70e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSLQSFANDLL-----KQGIPWKKIPLNALISRRFAHLLVKKdicnSETKKDLLKKVKNAIS 418
Cdd:cd02659    4 GLKNQGATCYMNSLLQQLYMTPEFRNAVYsipptEDDDDNKSVPLALQRLFLFLQLSESP----VKTTELTDKTRSFGWD 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 419 ATAERfsgyMQNDAHEFLSQCLDQLKEDMEKLnktwktepvpGEENSpdvtatrvytcpvITNLeFEVQHS--IICKACG 496
Cdd:cd02659   80 SLNTF----EQHDVQEFFRVLFDKLEEKLKGT----------GQEGL-------------IKNL-FGGKLVnyIICKECP 131
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 497 EIIPKREQFNDLSIDLprrkkpLPPRSIQDSLDLFFRAEELE----YSCEKCGGKC-ALVRHKFNRLPRILILHLKRYSF 571
Cdd:cd02659  132 HESEREEYFLDLQVAV------KGKKNLEESLDAYVQGETLEgdnkYFCEKCGKKVdAEKGVCFKKLPPVLTLQLKRFEF 205
                        250       260       270
                 ....*....|....*....|....*....|...
gi 347602462 572 NVALSLNNKIGQQVIIPRYLTLSSHCTENTKPP 604
Cdd:cd02659  206 DFETMMRIKINDRFEFPLELDMEPYTEKGLAKK 238
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
344-603 9.05e-26

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 108.55  E-value: 9.05e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFS---LQSFAnDLLKQGIPWKKiplnalisrrfahllvKKDICNSETKKDLLKKvKNaisat 420
Cdd:cd02663    1 GLENFGNTCYCNSVLQALYFenlLTCLK-DLFESISEQKK----------------RTGVISPKKFITRLKR-EN----- 57
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 421 aERFSGYMQNDAHEFLSQCLDQLKEDMEKLNKTWKTEPVPGEENSPDVTATRVYTC--PVITNlefevqhSIICKACGEI 498
Cdd:cd02663   58 -ELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIfqGILTN-------ETRCLTCETV 129
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 499 IPKREQFNDLSIDLPrrkkplPPRSIQDSLDLFFRAEEL----EYSCEKCGGKC-ALVRHKFNRLPRILILHLKRYSFNV 573
Cdd:cd02663  130 SSRDETFLDLSIDVE------QNTSITSCLRQFSATETLcgrnKFYCDECCSLQeAEKRMKIKKLPKILALHLKRFKYDE 203
                        250       260       270
                 ....*....|....*....|....*....|
gi 347602462 574 ALSLNNKIGQQVIIPRYLTLSSHCTENTKP 603
Cdd:cd02663  204 QLNRYIKLFYRVVFPLELRLFNTTDDAENP 233
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
344-573 3.43e-23

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 101.25  E-value: 3.43e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSLQSFANDLLKQGIPWKKIPL--------------NALISRRFAHLLVKKDICNSETKKDL 409
Cdd:cd02658    1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVdpandlncqliklaDGLLSGRYSKPASLKSENDPYQVGIK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 410 LKKVKNAISATAERFSGYMQNDAHEFLSQCLDQLKedmEKLNKTWKTEPvpgeenspdvtatrvytcpvITNLEFEVQHS 489
Cdd:cd02658   81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLD---RESFKNLGLNP--------------------NDLFKFMIEDR 137
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 490 IICKACGEIIPKREQFNDLSIDLPRR--------KKPLPPRSIQDSLDLFFRAEELEYSCEKCGGKC-ALVRHKFNRLPR 560
Cdd:cd02658  138 LECLSCKKVKYTSELSEILSLPVPKDeatekeegELVYEPVPLEDCLKAYFAPETIEDFCSTCKEKTtATKTTGFKTFPD 217
                        250
                 ....*....|...
gi 347602462 561 ILILHLKRYSFNV 573
Cdd:cd02658  218 YLVINMKRFQLLE 230
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
343-598 3.71e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 95.90  E-value: 3.71e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 343 QGFSNLGNTCYMNAILQSLFSLQSFANDLLKQG---IPWKKIPLNAL---ISRRFAhllvkkDICNSETKK-----DLLK 411
Cdd:cd02660    1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRhscTCLSCSPNSCLscaMDEIFQ------EFYYSGDRSpygpiNLLY 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 412 KVKNAisatAERFSGYMQNDAHEFLSQCLDQLKEDMEKlnktwktepVPGEENSPDvtatrvyTCPVITNLEFE--VQHS 489
Cdd:cd02660   75 LSWKH----SRNLAGYSQQDAHEFFQFLLDQLHTHYGG---------DKNEANDES-------HCNCIIHQTFSgsLQSS 134
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 490 IICKACGEIIPKREQFNDLSIDLPRRKKPLPPRS---------IQDSLDLFFRAEELE---YSCEKCGGKCALVRH-KFN 556
Cdd:cd02660  135 VTCQRCGGVSTTVDPFLDLSLDIPNKSTPSWALGesgvsgtptLSDCLDRFTRPEKLGdfaYKCSGCGSTQEATKQlSIK 214
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 347602462 557 RLPRILILHLKRYSFNvALSLNNKIGQQVIIPRYLTLSSHCT 598
Cdd:cd02660  215 KLPPVLCFQLKRFEHS-LNKTSRKIDTYVQFPLELNMTPYTS 255
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
344-588 4.22e-21

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 93.12  E-value: 4.22e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSlqsfandllkqgipwkkiplnalisrrfahllvkkdicnsetkkdllkkvknaisataer 423
Cdd:cd02674    1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 424 fsgyMQNDAHEFLSQCLDQLkedmeklnktwktepvpgeeNSpdvtatrvytcpVITNLeFEVQH--SIICKACGEIIPK 501
Cdd:cd02674   21 ----DQQDAQEFLLFLLDGL--------------------HS------------IIVDL-FQGQLksRLTCLTCGKTSTT 63
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 502 REQFNDLSIDLPRRKKPLPPRSIQDSLDLFFRAEELE----YSCEKCGGK-CALVRHKFNRLPRILILHLKRYSFNVALS 576
Cdd:cd02674   64 FEPFTYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDgdnaWKCPKCKKKrKATKKLTISRLPKVLIIHLKRFSFSRGST 143
                        250
                 ....*....|..
gi 347602462 577 lnNKIGQQVIIP 588
Cdd:cd02674  144 --RKLTTPVTFP 153
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
344-605 4.34e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 91.95  E-value: 4.34e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSLQSFANDLL----KQGIPWKKIPLNALISRRFAHLLvkkdicNSETKKDLLKKVKNAISA 419
Cdd:cd02661    3 GLQNLGNTCFLNSVLQCLTHTPPLANYLLsrehSKDCCNEGFCMMCALEAHVERAL------ASSGPGSAPRIFSSNLKQ 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 420 TAERFSGYMQNDAHEFLSQCLDQlkedMEK--LNKTwktepvPGEENSPDVTATRVYTCPVITNLefeVQHSIICKACGE 497
Cdd:cd02661   77 ISKHFRIGRQEDAHEFLRYLLDA----MQKacLDRF------KKLKAVDPSSQETTLVQQIFGGY---LRSQVKCLNCKH 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 498 IIPKREQFNDLSIDLPRRKkplpprSIQDSLDLFFRAEELE----YSCEKCGGKC-ALVRHKFNRLPRILILHLKRYSFN 572
Cdd:cd02661  144 VSNTYDPFLDLSLDIKGAD------SLEDALEQFTKPEQLDgenkYKCERCKKKVkASKQLTIHRAPNVLTIHLKRFSNF 217
                        250       260       270
                 ....*....|....*....|....*....|...
gi 347602462 573 VAlslnNKIGQQVIIPRYLTLSSHCTENTKPPF 605
Cdd:cd02661  218 RG----GKINKQISFPETLDLSPYMSQPNDGPL 246
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
344-600 2.85e-18

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 86.29  E-value: 2.85e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSLQSFAnDLLkqgipwkkiplnalisrrfahllvkkdicnSETKKDLLKKVknaiSATAER 423
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALR-ELL------------------------------SETPKELFSQV----CRKAPQ 45
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 424 FSGYMQNDAHEFLSQCLDQLkedmeklnktwktepvpgeENSPDvtatRVYTCpvitnlefEVQHSIICKACGEIIPKRE 503
Cdd:cd02667   46 FKGYQQQDSHELLRYLLDGL-------------------RTFID----SIFGG--------ELTSTIMCESCGTVSLVYE 94
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 504 QFNDLSidLPRRKKPLPPRSIQDSLDLFFRAEELEYSCEKCGGKC--ALVRHKFNRLPRILILHLKRYSFNVALSLnNKI 581
Cdd:cd02667   95 PFLDLS--LPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCtkAKKQYLISKLPPVLVIHLKRFQQPRSANL-RKV 171
                        250
                 ....*....|....*....
gi 347602462 582 GQQVIIPRYLTLSSHCTEN 600
Cdd:cd02667  172 SRHVSFPEILDLAPFCDPK 190
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
344-607 4.20e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 83.79  E-value: 4.20e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSLQSFandllKQGIPwKKIPLNALISRRFAHLLVKKDICNSETKKDLLKKVKNAISATAER 423
Cdd:cd02671   26 GLNNLGNTCYLNSVLQVLYFCPGF-----KHGLK-HLVSLISSVEQLQSSFLLNPEKYNDELANQAPRRLLNALREVNPM 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 424 FSGYMQNDAHEFLSQCLDQLKEDMEKLNKtwktepvpGEEnspdVTATRVYTCPVITNlefevqhsiickacgeiipKRE 503
Cdd:cd02671  100 YEGYLQHDAQEVLQCILGNIQELVEKDFQ--------GQL----VLRTRCLECETFTE-------------------RRE 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 504 QFNDLSIDLPRRKKPLPPRSIQDSLDLFFRAEEL-----------------EYSCEKCGGKCALVRH-KFNRLPRILILH 565
Cdd:cd02671  149 DFQDISVPVQESELSKSEESSEISPDPKTEMKTLkwaisqfasverivgedKYFCENCHHYTEAERSlLFDKLPEVITIH 228
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 347602462 566 LKRYSFNVALSLN----NKIGQQVIIPRYLTLSSHCTENTKPPFNL 607
Cdd:cd02671  229 LKCFAANGSEFDCygglSKVNTPLLTPLKLSLEEWSTKPKNDVYRL 274
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
344-593 5.39e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 83.31  E-value: 5.39e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSLQSFANDLLKQGIPWKK---IPLNALIsRRFAHLLVKKDICNSETKKDLLkkvknaiSAT 420
Cdd:cd02664    1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGdsqSVMKKLQ-LLQAHLMHTQRRAEAPPDYFLE-------ASR 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 421 AERFSGYMQNDAHEFLSQCLDQLKEDMEKlnktwktepvpgeenspdVTATRVYTCpvitnlefevqhsIICKACGEIIP 500
Cdd:cd02664   73 PPWFTPGSQQDCSEYLRYLLDRLHTLIEK------------------MFGGKLSTT-------------IRCLNCNSTSA 121
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 501 KREQFNDLSIDLPrrkkplpprSIQDSLDLFFRAEEL----EYSCEKCGGKCALVRH-KFNRLPRILILHLKRYSFNVAL 575
Cdd:cd02664  122 RTERFRDLDLSFP---------SVQDLLNYFLSPEKLtgdnQYYCEKCASLQDAEKEmKVTGAPEYLILTLLRFSYDQKT 192
                        250
                 ....*....|....*...
gi 347602462 576 SLNNKIGQQVIIPRYLTL 593
Cdd:cd02664  193 HVREKIMDNVSINEVLSL 210
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
865-952 1.28e-15

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 77.91  E-value: 1.28e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 865 DVLDM-EYTEAEAEELkrnaETGNLPHSYRLISVVSHIGSTSSSGHYISDVYDIKKQAWFTYNDLEVSKIQEASVQSDRD 943
Cdd:cd02257  169 LELDLsPYLSEGEKDS----DSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGS 244
                         90
                 ....*....|.
gi 347602462 944 RS--GYIFFYM 952
Cdd:cd02257  245 LSssAYILFYE 255
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
344-572 3.39e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 70.47  E-value: 3.39e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSLQSFandllkqgipwkkiplnalisRRFahllvkkdicnsetkkdlLKKVKNaisataer 423
Cdd:cd02662    1 GLVNLGNTCFMNSVLQALASLPSL---------------------IEY------------------LEEFLE-------- 33
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 424 fsgymQNDAHEFLSQCLDQLKEDMeklnktwkTEPVPGEENSpdvtatrvytcpvitnlefevqhSIICKACGEIIPKR- 502
Cdd:cd02662   34 -----QQDAHELFQVLLETLEQLL--------KFPFDGLLAS-----------------------RIVCLQCGESSKVRy 77
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 347602462 503 EQFNDLSIdlprrkkPLPPRSIQDSLDL------FFRAEELE-YSCEKCggkcalvRHKFNRLPRILILHLKRYSFN 572
Cdd:cd02662   78 ESFTMLSL-------PVPNQSSGSGTTLehclddFLSTEIIDdYKCDRC-------QTVIVRLPQILCIHLSRSVFD 140
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
867-951 1.22e-12

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 69.78  E-value: 1.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  867 LDM-EYTEAEAEELKRNAEtgnlphSYRLISVVSHIGStSSSGHYISDVYDIKKQAWFTYNDLEVSKI-QEASVQSDrdr 944
Cdd:pfam00443 234 LDLsRYLAEELKPKTNNLQ------DYRLVAVVVHSGS-LSSGHYIAYIKAYENNRWYKFDDEKVTEVdEETAVLSS--- 303

                  ....*..
gi 347602462  945 SGYIFFY 951
Cdd:pfam00443 304 SAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
344-517 1.15e-11

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 68.76  E-value: 1.15e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSLQSFANDLLKQGipWKK-------IPLNALISRRFAHLLvkKDICNSETKKDLLKKVKNA 416
Cdd:COG5560  267 GLRNLGNTCYMNSALQCLMHTWELRDYFLSDE--YEEsineenpLGMHGSVASAYADLI--KQLYDGNLHAFTPSGFKKT 342
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 417 ISATAERFSGYMQNDAHEFLSQCLDQLKEDMEKL-NKTWKTEPVPGEENSPDVTAT--------RVYTCPVITNL-EFEV 486
Cdd:COG5560  343 IGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIiKKPYTSKPDLSPGDDVVVKKKakecwwehLKRNDSIITDLfQGMY 422
                        170       180       190
                 ....*....|....*....|....*....|.
gi 347602462 487 QHSIICKACGEIIPKREQFNDLSIDLPRRKK 517
Cdd:COG5560  423 KSTLTCPGCGSVSITFDPFMDLTLPLPVSMV 453
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
889-951 1.91e-11

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 65.00  E-value: 1.91e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 347602462 889 PHSYRLISVVSHIGSTSSsGHYISDVYDIKKQAWFTYNDLEVSKIQEASVQSdrdRSGYIFFY 951
Cdd:cd02674  171 PFKYDLYAVVNHYGSLNG-GHYTAYCKNNETNDWYKFDDSRVTKVSESSVVS---SSAYILFY 229
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
344-572 5.16e-11

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 66.82  E-value: 5.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  344 GFSNLGNTCYMNAILQSLFSLQSFANDLLkqgipwkKIPLNALISRRFAHLLVKKDICNSETKK---DLLKKVKNAISAT 420
Cdd:COG5077   195 GLRNQGATCYMNSLLQSLFFIAKFRKDVY-------GIPTDHPRGRDSVALALQRLFYNLQTGEepvDTTELTRSFGWDS 267
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  421 AERFsgyMQNDAHEFLSQCLDQLKEDMeklnktwKTEPVPGEENSPDVTATRVYTCPVITNLE-FEVQHSIickacgeii 499
Cdd:COG5077   268 DDSF---MQHDIQEFNRVLQDNLEKSM-------RGTVVENALNGIFVGKMKSYIKCVNVNYEsARVEDFW--------- 328
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  500 pkREQFNDLSIDlprrkkplpprSIQDSLDLFFRAEELE----YSCEKCGGKCAlvrHK---FNRLPRILILHLKRYSFN 572
Cdd:COG5077   329 --DIQLNVKGMK-----------NLQESFRRYIQVETLDgdnrYNAEKHGLQDA---KKgviFESLPPVLHLQLKRFEYD 392
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
344-599 6.38e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 64.75  E-value: 6.38e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSLQSFANDLLKqgipwkkIPLNALISRRFAHllvKKDICNSETKKDLL-----------KK 412
Cdd:cd02668    1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYE-------CNSTEDAELKNMP---PDKPHEPQTIIDQLqlifaqlqfgnRS 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 413 VKNAIS-ATAERFSGYMQNDAHEFLSQCLDQLKEDMEKLNktwktepvpgeeNSPDVTatrvytcpVITNL-EFEVQHSI 490
Cdd:cd02668   71 VVDPSGfVKALGLDTGQQQDAQEFSKLFLSLLEAKLSKSK------------NPDLKN--------IVQDLfRGEYSYVT 130
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 491 ICKACGEIIPKREQFNDLSIDLPRRKKplpprsIQDSLDLFFRAEELE----YSCEKCGGKC-ALVRHKFNRLPRILILH 565
Cdd:cd02668  131 QCSKCGRESSLPSKFYELELQLKGHKT------LEECIDEFLKEEQLTgdnqYFCESCNSKTdATRRIRLTTLPPTLNFQ 204
                        250       260       270
                 ....*....|....*....|....*....|....
gi 347602462 566 LKRYSFNVALSLNNKIGQQVIIPRYLTLSSHCTE 599
Cdd:cd02668  205 LLRFVFDRKTGAKKKLNASISFPEILDMGEYLAE 238
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
344-572 6.63e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 59.25  E-value: 6.63e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSLQSFANDLL----KQGIPWKKIPLNalisRRFAhLLVKKdICNSETKK------DLLKKV 413
Cdd:cd02669  121 GLNNIKNNDYANVIIQALSHVKPIRNFFLlyenYENIKDRKSELV----KRLS-ELIRK-IWNPRNFKghvsphELLQAV 194
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 414 KNAisaTAERFSGYMQNDAHEFLSQCLDQLKEDMEKLNKtwktepvpgeENSPDVTAT-----RVYTCPVITNLEFEVQH 488
Cdd:cd02669  195 SKV---SKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKK----------PNSSIIHDCfqgkvQIETQKIKPHAEEEGSK 261
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 489 SIICKACGEIIPKREQFNDLSIDLP--------RRKKPLPPRSIQDSLDLFFRAEELEYscekcggKCALVRHKFNRLPR 560
Cdd:cd02669  262 DKFFKDSRVKKTSVSPFLLLTLDLPppplfkdgNEENIIPQVPLKQLLKKYDGKTETEL-------KDSLKRYLISRLPK 334
                        250
                 ....*....|..
gi 347602462 561 ILILHLKRYSFN 572
Cdd:cd02669  335 YLIFHIKRFSKN 346
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
347-596 1.33e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 56.77  E-value: 1.33e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 347 NLGNTCYMNAILQSLFSL----QSFANDLlkqgipwkkiplnalisrrfahllvkkdicnsetkkdllkkvknaisatae 422
Cdd:cd02673    4 NTGNSCYFNSTMQALSSIgkinTEFDNDD--------------------------------------------------- 32
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 423 rfsgymQNDAHEFLSQCLDQLKEDMEKLNKTWKTEPVPGEENSPdvtatrvytcpvITNLEFEVQHSIICKACGeiipKR 502
Cdd:cd02673   33 ------QQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNP------------LEAFKYTIESSYVCIGCS----FE 90
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 503 EQFNDLSIDLPRRKKPLPPRSIQDSLDLFFRAEELEYSCEKCGGKCALVRHKFNRLPRILILHLKRYSFNVALSLNNKIG 582
Cdd:cd02673   91 ENVSDVGNFLDVSMIDNKLDIDELLISNFKTWSPIEKDCSSCKCESAISSERIMTFPECLSINLKRYKLRIATSDYLKKN 170
                        250
                 ....*....|....
gi 347602462 583 QQVIIPRYLTLSSH 596
Cdd:cd02673  171 EEIMKKYCGTDAKY 184
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
892-952 5.82e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 55.36  E-value: 5.82e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 347602462 892 YRLISVVSHIGSTSSSGHYISDVYDIKKQaWFTYNDLEVSKIQEASVQSDRdrsGYIFFYM 952
Cdd:cd02661  248 YKLYAVLVHSGFSPHSGHYYCYVKSSNGK-WYNMDDSKVSPVSIETVLSQK---AYILFYI 304
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
865-934 8.55e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 55.12  E-value: 8.55e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 865 DVLDMEyteaeaeelKRNAETGNLPHSYRLISVVSHIGSTSSSGHYISDVYDIKKQAWFTYNDLEVSKIQ 934
Cdd:cd02668  228 EILDMG---------EYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMP 288
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
344-594 9.69e-08

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 54.81  E-value: 9.69e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSL-FSLQSFANDLLKQGIPWKKipLNALISRRFAHLlvkkdicnseTKKDLLKKVKNAISATAE 422
Cdd:COG5533    1 GLPNLGNTCFMNSVLQILaLYLPKLDELLDDLSKELKV--LKNVIRKPEPDL----------NQEEALKLFTALWSSKEH 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 423 RFSG----YMQNDAHEFLSQCLDQLKEDMEKLNKTWKTEPVPGEEnspdvtatrvytcpvitnlefevqHSIIckacgei 498
Cdd:COG5533   69 KVGWippmGSQEDAHELLGKLLDELKLDLVNSFTIRIFKTTKDKK------------------------KTST------- 117
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 499 ipkrEQFNDLSIDLPRRKKPLPPRSIQDSLDLFfraeeLEYSCEKCGGKCA-----------LVRHKFNRLPRILILHLK 567
Cdd:COG5533  118 ----GDWFDIIIELPDQTWVNNLKTLQEFIDNM-----EELVDDETGVKAKeneelevqakqEYEVSFVKLPKILTIQLK 188
                        250       260
                 ....*....|....*....|....*..
gi 347602462 568 RYSFNVAlslNNKIGQQVIIPRYLTLS 594
Cdd:COG5533  189 RFANLGG---NQKIDTEVDEKFELPVK 212
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
890-951 8.45e-07

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 51.73  E-value: 8.45e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 347602462 890 HSYRLISVVSHIGSTSSsGHYISDVYdiKKQAWFTYNDLEVSKIQEASVQSDRDRSGYIFFY 951
Cdd:COG5533  223 TYYDLVGFVLHQGSLEG-GHYIAYVK--KGGKWEKANDSDVTPVSEEEAINEKAKNAYLYFY 281
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
888-951 2.28e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 50.78  E-value: 2.28e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 347602462 888 LPHSYRLISVVSHIGSTSSSGHYisdVYDIKK-----QAWFTYNDLEVSKIQEASVQSDRdrsGYIFFY 951
Cdd:cd02658  248 GPGKYELIAFISHKGTSVHSGHY---VAHIKKeidgeGKWVLFNDEKVVASQDPPEMKKL---GYIYFY 310
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
658-946 5.40e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 49.80  E-value: 5.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 658 ELKRSVALSQRLCEISSseqqqeDLEKDSKSCkLEPDKsELENSGFDAMSEEELLAAVLeiSKREASPSPShEDDDKPTS 737
Cdd:cd02666   59 ELQRSNQFVYELRSLFN------DLIHSNTRS-VTPSK-ELAYLALRQQDVTECIDNVL--FQLEVALEPI-SNAFAGPD 127
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 738 SPDTGFAEDDIQEMPE----NPDPMETEKPKTITEPDPASFTEITKDC-DENKENKTPEGSQGEVDWLQQYDMErereeq 812
Cdd:cd02666  128 TEDDKEQSDLIKRLFSgktkQQLVPESMGNQPSVRTKTERFLSLLVDVgKKGREIVVLLEPKDLYDALDRYFDY------ 201
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 813 elqqalaQSLQE--QEAWEQKEDDDLKRATELSLQEFNNSFLDSLGSDEDSGNEDVLDMEYTEAEAEELKRNAETGNL-- 888
Cdd:cd02666  202 -------DSLTKlpQRSQVQAQLAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQfd 274
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 347602462 889 ---PHSYRLISVVSHIGSTSSsGHYISDVYDIKKQAWFTYNDLEVSKIQEASVQSDRDRSG 946
Cdd:cd02666  275 dlkSYGYRLHAVFIHRGEASS-GHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNT 334
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
865-955 8.07e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 49.18  E-value: 8.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 865 DVLDME-YTEAEAEELKRNAE-TGNLPHSYRLISVVSHIGsTSSSGHYISDVYDIKKQAWFTYNDLEVSK-----IQEAS 937
Cdd:cd02659  223 LELDMEpYTEKGLAKKEGDSEkKDSESYIYELHGVLVHSG-DAHGGHYYSYIKDRDDGKWYKFNDDVVTPfdpndAEEEC 301
                         90
                 ....*....|....*...
gi 347602462 938 VQSDRDRSGYIFFYMHKE 955
Cdd:cd02659  302 FGGEETQKTYDSGPRAFK 319
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
892-935 8.26e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 48.87  E-value: 8.26e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 347602462 892 YRLISVVSHIGSTSSSGHYISDVYDIKKQAWFTYNDLEVSKIQE 935
Cdd:cd02657  241 YELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTE 284
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
892-951 9.73e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 48.91  E-value: 9.73e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 892 YRLISVVSHIGsTSSSGHYISDVYDIKKQaWFTYNDLEVSKIQEASVQSDRdrsGYIFFY 951
Cdd:cd02660  273 YDLFAVVVHKG-TLDTGHYTAYCRQGDGQ-WFKFDDAMITRVSEEEVLKSQ---AYLLFY 327
PH-like cd00900
Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like ...
14-99 9.96e-06

Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.


Pssm-ID: 275390  Cd Length: 89  Bit Score: 44.70  E-value: 9.96e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462  14 SMQTGITKWKEGSFEIVekenKVSLVVHYNT-GGIPRIFQLSHnIKNVVLRPSGAKQSRLMLTLQD-NSFLSIDKVPSKD 91
Cdd:cd00900    7 RVYREPTKRVEGTLYIT----SDRLILRDKNdGGLELSIPISD-IVNVNVSPQGPSSRYLVLVLKDrGEFVGFSFPKEED 81

                 ....*...
gi 347602462  92 AEEMRLFL 99
Cdd:cd00900   82 AIEISDAL 89
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
873-951 1.44e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 47.52  E-value: 1.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 873 EAEAEELKRNAE-----TGNLPhSYRLISVVSHIGSTSSSGHYISDVYDI-KKQAWFTYNDLEVSKIQEASVQSDRDRSG 946
Cdd:cd02673  161 IATSDYLKKNEEimkkyCGTDA-KYSLVAVICHLGESPYDGHYIAYTKELyNGSSWLYCSDDEIRPVSKNDVSTNARSSG 239

                 ....*
gi 347602462 947 YIFFY 951
Cdd:cd02673  240 YLIFY 244
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
892-951 4.87e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 46.53  E-value: 4.87e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 347602462 892 YRLISVVSHIGSTSSSGHYISdvydIKKQA--WFTYNDLEVSKIQEASVQ-----SDRDRSGYIFFY 951
Cdd:cd02663  237 YELVAVVVHIGGGPNHGHYVS----IVKSHggWLLFDDETVEKIDENAVEeffgdSPNQATAYVLFY 299
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
344-452 6.88e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 46.17  E-value: 6.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 344 GFSNLGNTCYMNAILQSLFSLQSFaNDLLKQGIPWKKIPLNAlisrrfAHLLVK--KDICNSETKK----------DLLK 411
Cdd:cd02657    1 GLTNLGNTCYLNSTLQCLRSVPEL-RDALKNYNPARRGANQS------SDNLTNalRDLFDTMDKKqepvppieflQLLR 73
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 347602462 412 KVKNAIsATAERFSGYMQNDAHEFLSQCLDQLKEDMEKLNK 452
Cdd:cd02657   74 MAFPQF-AEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGS 113
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
885-935 1.87e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 44.88  E-value: 1.87e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 347602462 885 TGNLPHSYRLISVVSHIGSTSSSGHYISDVydikkqAWFTYNDLEVSKIQE 935
Cdd:cd02671  265 TKPKNDVYRLFAVVMHSGATISSGHYTAYV------RWLLFDDSEVKVTEE 309
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
890-952 4.21e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 42.93  E-value: 4.21e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 347602462 890 HSYRLISVVSHIGStSSSGHYISDVYDIKKQAWFTYNDLEVSKIQEASVQSD-----RDRSGYIFFYM 952
Cdd:cd02665  162 VPYELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDsfgggRNPSAYCLMYI 228
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
879-933 4.61e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 43.85  E-value: 4.61e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 347602462 879 LKRNAETGNLPHSYRLISVVSHIGSTSSSGHYISDVYDIKKQAWFTYNDLEVSKI 933
Cdd:cd02669  370 VHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEV 424
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
892-951 1.20e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 42.09  E-value: 1.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 892 YRLISVVSHIGSTSSSGHYISDVYDIK--------------------KQAWFTYNDLEVSKIQEASVQSDRDR----SGY 947
Cdd:cd02664  243 YRLYAVVVHSGYSSESGHYFTYARDQTdadstgqecpepkdaeendeSKNWYLFNDSRVTFSSFESVQNVTSRfpkdTPY 322

                 ....
gi 347602462 948 IFFY 951
Cdd:cd02664  323 ILFY 326
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
344-398 3.85e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 39.85  E-value: 3.85e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 347602462 344 GFSNLGNTCYMNAILQSLFSLQSFANDLLKQGIPWKKIPLNALISrrfAHLLVKK 398
Cdd:cd02665    1 GLKNVGNTCWFSAVIQSLFSQQQDVSEFTHLLLDWLEDAFQAAAE---AISPGEK 52
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
512-588 7.33e-03

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 40.25  E-value: 7.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347602462 512 LPRRKKPLPPRSI--QDSLDLFFRAEELEYS----CEKCGGK-CALVRHKFNRLPRILILHLKRYSFNvaLSLNNKIGQQ 584
Cdd:COG5560  663 WTIREIGAAERTItlQDCLNEFSKPEQLGLSdswyCPGCKEFrQASKQMELWRLPMILIIHLKRFSSV--RSFRDKIDDL 740

                 ....
gi 347602462 585 VIIP 588
Cdd:COG5560  741 VEYP 744
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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