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Conserved domains on  [gi|553371605|gb|ESA97897|]
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hypothetical protein HMPREF1620_01087 [Escherichia coli 909945-2]

Protein Classification

PqiC family protein; membrane integrity-associated transporter subunit PqiC; membrane integrity-associated transporter subunit PqiC( domain architecture ID 10007093)

PqiC family protein similar to Escherichia coli membrane integrity-associated transporter subunit PqiC, which is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 7-208 1.81e-62

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


:

Pssm-ID: 442451  Cd Length: 202  Bit Score: 192.90  E-value: 1.81e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553371605   7 MRYAGRRVWLLMISggAILLSACTILPSAPVSQVYLLPvPPAVSVPHAQTVNWSLRVSQPATNQFLNSSRIAVQPQGQEI 86
Cdd:COG3218    2 TPRRLLRLLLLLLL--ALLLAGCSSLPAPPPPTLYDLT-PPLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553371605  87 AVYKNSRWSDSAPILVRNRLIQAFRSDGRIRAVSSDDDSLQADVELSGDLSAFQGVYHVGSSEVLIRFDARLVRISDRRI 166
Cdd:COG3218   79 QYYAGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAPRAVVELRARLVDDRDGRV 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 553371605 167 IATRQFDIRQPIKGNEMNEVVQAFGLASDQLATQVLNWTMQQ 208
Cdd:COG3218  159 VASRRFEARVPAASADAAGVVAALNQALDQLLAEIVAWLAAQ 200
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 7-208 1.81e-62

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 192.90  E-value: 1.81e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553371605   7 MRYAGRRVWLLMISggAILLSACTILPSAPVSQVYLLPvPPAVSVPHAQTVNWSLRVSQPATNQFLNSSRIAVQPQGQEI 86
Cdd:COG3218    2 TPRRLLRLLLLLLL--ALLLAGCSSLPAPPPPTLYDLT-PPLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553371605  87 AVYKNSRWSDSAPILVRNRLIQAFRSDGRIRAVSSDDDSLQADVELSGDLSAFQGVYHVGSSEVLIRFDARLVRISDRRI 166
Cdd:COG3218   79 QYYAGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAPRAVVELRARLVDDRDGRV 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 553371605 167 IATRQFDIRQPIKGNEMNEVVQAFGLASDQLATQVLNWTMQQ 208
Cdd:COG3218  159 VASRRFEARVPAASADAAGVVAALNQALDQLLAEIVAWLAAQ 200
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 46-201 6.90e-16

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 71.58  E-value: 6.90e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553371605   46 PPAVSVPHAQTVNWSLRVSQPATNQFLNSSRIAVQPQGQEIAVYKNSRWSDSAPILVRNRLIQAFRSDGRIRAVSS--DD 123
Cdd:pfam03886   1 PAPAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLSRRLPSRRVAAfpWP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 553371605  124 DSLQADVELSGDLSAFQGVYHvgsSEVLIRFDARLVRISDRRIIATRQFDIRQPIKGNEMNEVVQAFGLASDQLATQV 201
Cdd:pfam03886  81 LGGTPDYRLQVDVRRFDGRPG---GNAVLEARWTLLDAGGGRVLTSRSFRISEPVAGDGYAALVAALSQALAQLAAQI 155
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 7-208 1.81e-62

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 192.90  E-value: 1.81e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553371605   7 MRYAGRRVWLLMISggAILLSACTILPSAPVSQVYLLPvPPAVSVPHAQTVNWSLRVSQPATNQFLNSSRIAVQPQGQEI 86
Cdd:COG3218    2 TPRRLLRLLLLLLL--ALLLAGCSSLPAPPPPTLYDLT-PPLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553371605  87 AVYKNSRWSDSAPILVRNRLIQAFRSDGRIRAVSSDDDSLQADVELSGDLSAFQGVYHVGSSEVLIRFDARLVRISDRRI 166
Cdd:COG3218   79 QYYAGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAPRAVVELRARLVDDRDGRV 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 553371605 167 IATRQFDIRQPIKGNEMNEVVQAFGLASDQLATQVLNWTMQQ 208
Cdd:COG3218  159 VASRRFEARVPAASADAAGVVAALNQALDQLLAEIVAWLAAQ 200
PqiC COG3009
Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope ...
 7-201 2.36e-19

Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442246 [Multi-domain]  Cd Length: 198  Bit Score: 81.96  E-value: 2.36e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553371605   7 MRYAGRRVWLLmisGGAILLSACTilpSAPVSQVYLLPVPPAVSVPHAQTVNWSLRVSQPATNQFLNSSRIAVQPQGQEI 86
Cdd:COG3009    1 MKRPLRLLLLL---LLALLLAACA---SSPPTRYYTLPPPAAPAAAAAAAAAPVIEVGPVSLPDYLDRPQIVYRTGDGRL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553371605  87 AVYKNSRWSDSAPILVRNRLIQAFRSDGRIRAVSSDDDSL--QADVELSGDLSAFQGVYHvgsSEVLIRFDARLVRISDR 164
Cdd:COG3009   75 VIAENHRWAEPLSDQLTRALAANLAARLPGARVAAQPWPLagRPDYRLRVDVTRFDGRPD---GQAVLSAQWSLRRGGGG 151

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 553371605 165 RIIATRQFDIRQPIKGNEMNEVVQAFGLASDQLATQV 201
Cdd:COG3009  152 GPLLSRRFSIEEPLAGDGYDALVAALSQALAQLADQI 188
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 46-201 6.90e-16

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 71.58  E-value: 6.90e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553371605   46 PPAVSVPHAQTVNWSLRVSQPATNQFLNSSRIAVQPQGQEIAVYKNSRWSDSAPILVRNRLIQAFRSDGRIRAVSS--DD 123
Cdd:pfam03886   1 PAPAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLSRRLPSRRVAAfpWP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 553371605  124 DSLQADVELSGDLSAFQGVYHvgsSEVLIRFDARLVRISDRRIIATRQFDIRQPIKGNEMNEVVQAFGLASDQLATQV 201
Cdd:pfam03886  81 LGGTPDYRLQVDVRRFDGRPG---GNAVLEARWTLLDAGGGRVLTSRSFRISEPVAGDGYAALVAALSQALAQLAAQI 155
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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