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Conserved domains on  [gi|550738625|gb|ERS38223|]
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hypothetical protein HMPREF1271_01259 [Propionibacterium sp. KPL1838]

Protein Classification

AAA family ATPase( domain architecture ID 11431245)

AAA family ATPase with an AAA (ATPases Associated with various cellular Activities) domain functions as a modulator of stress response pathways and may have a chaperone-like role for the maturation of specific protein complexes or for the insertion of cofactors into proteins; similar to MoxR that is involved in the formation of active methanol dehydrogenase

CATH:  3.40.50.300
Gene Ontology:  GO:0005524|GO:0016887
PubMed:  16072036|11916378|15037234|17897320|18466635
SCOP:  2000039

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MoxR COG0714
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ...
 64-368 6.07e-136

MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


:

Pssm-ID: 440478 [Multi-domain]  Cd Length: 292  Bit Score: 389.53  E-value: 6.07e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625  64 ARRLVKTISRAfdskVVGQEALRTALLVGLIGGGHVLLESVPGLAKTLAASTLASTVDASFSRVQCTPDLLPSDIIGTQV 143
Cdd:COG0714    3 EARLRAEIGKV----YVGQEELIELVLIALLAGGHLLLEGVPGVGKTTLAKALARALGLPFIRIQFTPDLLPSDILGTYI 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625 144 FNPGSSTFTTELGPVHANVVLLDEINRSSAKTQAAMLEAMQERQATIGGKTYPMPDPFLVLATQNPIDEEGTYVLPQAQM 223
Cdd:COG0714   79 YDQQTGEFEFRPGPLFANVLLADEINRAPPKTQSALLEAMEERQVTIPGGTYKLPEPFLVIATQNPIEQEGTYPLPEAQL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625 224 DRFLLKVIVDYPLPADEVEMLRRLKSGALEsrTVSAVVSRDDVLWLQGLSRRVHVDESLLHYIVQIVHATRHAGDylpqe 303
Cdd:COG0714  159 DRFLLKLYIGYPDAEEEREILRRHTGRHLA--EVEPVLSPEELLALQELVRQVHVSEAVLDYIVDLVRATREHPD----- 231

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 550738625 304 qaryLEYGASPRATIAFVEAACAHALMHGRDHVIPDDVRAMRHMILRHRLILTFEAVATQVPVEE 368
Cdd:COG0714  232 ----LRKGPSPRASIALLRAARALALLDGRDYVTPDDVKAVAGPVLKHRLILSPEADAEGVTADD 292
 
Name Accession Description Interval E-value
MoxR COG0714
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ...
 64-368 6.07e-136

MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440478 [Multi-domain]  Cd Length: 292  Bit Score: 389.53  E-value: 6.07e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625  64 ARRLVKTISRAfdskVVGQEALRTALLVGLIGGGHVLLESVPGLAKTLAASTLASTVDASFSRVQCTPDLLPSDIIGTQV 143
Cdd:COG0714    3 EARLRAEIGKV----YVGQEELIELVLIALLAGGHLLLEGVPGVGKTTLAKALARALGLPFIRIQFTPDLLPSDILGTYI 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625 144 FNPGSSTFTTELGPVHANVVLLDEINRSSAKTQAAMLEAMQERQATIGGKTYPMPDPFLVLATQNPIDEEGTYVLPQAQM 223
Cdd:COG0714   79 YDQQTGEFEFRPGPLFANVLLADEINRAPPKTQSALLEAMEERQVTIPGGTYKLPEPFLVIATQNPIEQEGTYPLPEAQL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625 224 DRFLLKVIVDYPLPADEVEMLRRLKSGALEsrTVSAVVSRDDVLWLQGLSRRVHVDESLLHYIVQIVHATRHAGDylpqe 303
Cdd:COG0714  159 DRFLLKLYIGYPDAEEEREILRRHTGRHLA--EVEPVLSPEELLALQELVRQVHVSEAVLDYIVDLVRATREHPD----- 231

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 550738625 304 qaryLEYGASPRATIAFVEAACAHALMHGRDHVIPDDVRAMRHMILRHRLILTFEAVATQVPVEE 368
Cdd:COG0714  232 ----LRKGPSPRASIALLRAARALALLDGRDYVTPDDVKAVAGPVLKHRLILSPEADAEGVTADD 292
AAA_3 pfam07726
ATPase family associated with various cellular activities (AAA); This Pfam entry includes some ...
 98-228 1.95e-80

ATPase family associated with various cellular activities (AAA); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 429622 [Multi-domain]  Cd Length: 131  Bit Score: 242.46  E-value: 1.95e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625   98 HVLLESVPGLAKTLAASTLASTVDASFSRVQCTPDLLPSDIIGTQVFNPGSSTFTTELGPVHANVVLLDEINRSSAKTQA 177
Cdd:pfam07726   1 HVLLEGVPGLAKTLLVRTLARSLGLDFRRIQFTPDLLPSDITGTEVFDQKTREFEFRPGPVFANVLLADEINRAPPKTQS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 550738625  178 AMLEAMQERQATIGGKTYPMPDPFLVLATQNPIDEEGTYVLPQAQMDRFLL 228
Cdd:pfam07726  81 ALLEAMQERQVTIDGETHPLPEPFFVLATQNPIEQEGTYPLPEAQLDRFLM 131
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 80-234 5.74e-05

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 42.90  E-value: 5.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625  80 VGQEALRTALLVGLIG--GGHVLLESVPGLAKTLAASTLA---STVDASFSRVQCtPDLLPSDIIGTQvFNPGSSTFTTE 154
Cdd:cd00009    1 VGQEEAIEALREALELppPKNLLLYGPPGTGKTTLARAIAnelFRPGAPFLYLNA-SDLLEGLVVAEL-FGHFLVRLLFE 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625 155 LGPVHAN-VVLLDEINRSSAKTQAAMLEAMQerqatIGGKTYPMPDPFLVLATQNPIDEEGtyvLPQAQMDRFLLKVIVD 233
Cdd:cd00009   79 LAEKAKPgVLFIDEIDSLSRGAQNALLRVLE-----TLNDLRIDRENVRVIGATNRPLLGD---LDRALYDRLDIRIVIP 150


                 .
gi 550738625 234 Y 234
Cdd:cd00009  151 L 151
chlI CHL00081
Mg-protoporyphyrin IX chelatase
 315-375 1.14e-03

Mg-protoporyphyrin IX chelatase


Pssm-ID: 177020 [Multi-domain]  Cd Length: 350  Bit Score: 40.74  E-value: 1.14e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 550738625 315 RATIAFVEAACAHALMHGRDHVIPDDVRAMRHMILRHRL---ILtfEAVATQVPVEEIIDGIFG 375
Cdd:CHL00081 289 RGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRHRLrkdPL--ESIDSGDKVQKVFKEVFG 350
 
Name Accession Description Interval E-value
MoxR COG0714
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ...
 64-368 6.07e-136

MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440478 [Multi-domain]  Cd Length: 292  Bit Score: 389.53  E-value: 6.07e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625  64 ARRLVKTISRAfdskVVGQEALRTALLVGLIGGGHVLLESVPGLAKTLAASTLASTVDASFSRVQCTPDLLPSDIIGTQV 143
Cdd:COG0714    3 EARLRAEIGKV----YVGQEELIELVLIALLAGGHLLLEGVPGVGKTTLAKALARALGLPFIRIQFTPDLLPSDILGTYI 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625 144 FNPGSSTFTTELGPVHANVVLLDEINRSSAKTQAAMLEAMQERQATIGGKTYPMPDPFLVLATQNPIDEEGTYVLPQAQM 223
Cdd:COG0714   79 YDQQTGEFEFRPGPLFANVLLADEINRAPPKTQSALLEAMEERQVTIPGGTYKLPEPFLVIATQNPIEQEGTYPLPEAQL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625 224 DRFLLKVIVDYPLPADEVEMLRRLKSGALEsrTVSAVVSRDDVLWLQGLSRRVHVDESLLHYIVQIVHATRHAGDylpqe 303
Cdd:COG0714  159 DRFLLKLYIGYPDAEEEREILRRHTGRHLA--EVEPVLSPEELLALQELVRQVHVSEAVLDYIVDLVRATREHPD----- 231

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 550738625 304 qaryLEYGASPRATIAFVEAACAHALMHGRDHVIPDDVRAMRHMILRHRLILTFEAVATQVPVEE 368
Cdd:COG0714  232 ----LRKGPSPRASIALLRAARALALLDGRDYVTPDDVKAVAGPVLKHRLILSPEADAEGVTADD 292
AAA_3 pfam07726
ATPase family associated with various cellular activities (AAA); This Pfam entry includes some ...
 98-228 1.95e-80

ATPase family associated with various cellular activities (AAA); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 429622 [Multi-domain]  Cd Length: 131  Bit Score: 242.46  E-value: 1.95e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625   98 HVLLESVPGLAKTLAASTLASTVDASFSRVQCTPDLLPSDIIGTQVFNPGSSTFTTELGPVHANVVLLDEINRSSAKTQA 177
Cdd:pfam07726   1 HVLLEGVPGLAKTLLVRTLARSLGLDFRRIQFTPDLLPSDITGTEVFDQKTREFEFRPGPVFANVLLADEINRAPPKTQS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 550738625  178 AMLEAMQERQATIGGKTYPMPDPFLVLATQNPIDEEGTYVLPQAQMDRFLL 228
Cdd:pfam07726  81 ALLEAMQERQVTIDGETHPLPEPFFVLATQNPIEQEGTYPLPEAQLDRFLM 131
AAA_lid_2 pfam17863
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ...
 304-373 4.93e-15

AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.


Pssm-ID: 465538 [Multi-domain]  Cd Length: 73  Bit Score: 69.17  E-value: 4.93e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 550738625  304 QARYLEYGASP-RATIAFVEAACAHALMHGRDHVIPDDVRAMRHMILRHRLIltFEAVATQVPVEEIIDGI 373
Cdd:pfam17863   5 AHLAIALGVSPrRADLALLRAARALAALEGRDYVTPEDVKEAAPLVLAHRLR--REPEAEGETAEEILEEI 73
ChlI COG1239
Mg-chelatase subunit ChlI [Coenzyme transport and metabolism];
77-353 1.14e-11

Mg-chelatase subunit ChlI [Coenzyme transport and metabolism];


Pssm-ID: 440852 [Multi-domain]  Cd Length: 344  Bit Score: 65.15  E-value: 1.14e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625  77 SKVVGQEALRTALLVGLI--GGGHVLLESVPGLAKTLAASTLAS------TVDASfsRVQCTPD---------------- 132
Cdd:COG1239    9 TAIVGQEEMKLALLLNAVdpGIGGVLIRGEKGTAKSTAVRALAAllppieVVKGC--PYNCDPDdpdelcpdcrerlaag 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625 133 -LLPSDII----------------------------GTQVFNPGSstftteLGPVHANVVLLDEINRSSAKTQAAMLEAM 183
Cdd:COG1239   87 eELPTETRpvpvvelplgatedrvvgsldlekalkeGEKAFEPGL------LARAHRGILYVDEVNLLDDHLVDVLLDAA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625 184 QERQATI--GGKTYPMPDPFLVLATQNPidEEGTyVLPQAqMDRFLLKVIVDYPL-PADEVEMLRRLKSGALESRTVSAV 260
Cdd:COG1239  161 AMGRNTVerEGVSVSHPARFVLVGTMNP--EEGE-LRPQL-LDRFGLSVEVEGPRdPEERVEIVRRRLAFEADPEAFAAE 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625 261 VSRDDvlwlQGLSRR----------VHVDESLLHYIVQIvhatrhagdylpqeqarYLEYG-ASPRATIAFVEAACAHAL 329
Cdd:COG1239  237 YAEEQ----AELRERiaaarellpeVTIPDELLRYIAEL-----------------CIALGvDGHRADIVIARAARALAA 295

                        330       340
                 ....*....|....*....|....
gi 550738625 330 MHGRDHVIPDDVRAMRHMILRHRL 353
Cdd:COG1239  296 LEGRTEVTAEDIRRAAELALPHRL 319
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
 98-226 1.62e-11

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 61.15  E-value: 1.62e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625   98 HVLLESVPGLAKTLAASTLAS-TVDASFSRVQCTPDLLPSDIIGTQVFNPGSSTFTteLGPV-----HANVVLLDEINRS 171
Cdd:pfam07728   1 GVLLVGPPGTGKTELAERLAAaLSNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWV--DGPLvraarEGEIAVLDEINRA 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 550738625  172 SAKTQAAMLEAMQERQATI---GGKTYPMPDPFLVLATQNPIDEEGTYVLPqAQMDRF 226
Cdd:pfam07728  79 NPDVLNSLLSLLDERRLLLpdgGELVKAAPDGFRLIATMNPLDRGLNELSP-ALRSRF 135
bpMoxR pfam20030
MoxR domain in the MoxR-vWA-beta-propeller ternary systems; Core MoxR component domain of the ...
 62-271 6.11e-07

MoxR domain in the MoxR-vWA-beta-propeller ternary systems; Core MoxR component domain of the MoxR-vWA-beta-propeller ternary systems, a class of NTP-dependent biological conflict systems.


Pssm-ID: 437862 [Multi-domain]  Cd Length: 205  Bit Score: 49.55  E-value: 6.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625   62 DRARRLVKTISRAFdskvVGQEALRTALLVGLIGGGHVLLESVPGLAKTLAASTLASTVDASFSRVQCTPDLLPSDIIGT 141
Cdd:pfam20030   1 RRLREVLRPLKTGF----VGKDEIIDLLGLALVARENLFLLGPPGTAKSALVRRLAARLGGRYFEYLLTRFTEPNELFGP 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625  142 ---QVFNPGS-STFTTELGPvHANVVLLDEI-NRSSAKTQAaMLEAMQERQATIGGKTYPMPdPFLVLATQNPIDEEGTY 216
Cdd:pfam20030  77 fdiRKLREGElVTNTEGMLP-EASLVFLDELfNANSAILNS-LLMVLNERIFRRGKETRKLP-ALMFVGASNHLPEDEAL 153

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 550738625  217 vlpQAQMDRFLLKVIVDYpLPADEVEMLrrLKSG-ALESRTVSA--VVSRDDVLWLQG 271
Cdd:pfam20030 154 ---AALFDRFLLRVKCDN-VPPDQLEAV--LAAGwKLERRPVTTrpSIAAAEIRELQQ 205
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 80-234 5.74e-05

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 42.90  E-value: 5.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625  80 VGQEALRTALLVGLIG--GGHVLLESVPGLAKTLAASTLA---STVDASFSRVQCtPDLLPSDIIGTQvFNPGSSTFTTE 154
Cdd:cd00009    1 VGQEEAIEALREALELppPKNLLLYGPPGTGKTTLARAIAnelFRPGAPFLYLNA-SDLLEGLVVAEL-FGHFLVRLLFE 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625 155 LGPVHAN-VVLLDEINRSSAKTQAAMLEAMQerqatIGGKTYPMPDPFLVLATQNPIDEEGtyvLPQAQMDRFLLKVIVD 233
Cdd:cd00009   79 LAEKAKPgVLFIDEIDSLSRGAQNALLRVLE-----TLNDLRIDRENVRVIGATNRPLLGD---LDRALYDRLDIRIVIP 150


                 .
gi 550738625 234 Y 234
Cdd:cd00009  151 L 151
chlI CHL00081
Mg-protoporyphyrin IX chelatase
 315-375 1.14e-03

Mg-protoporyphyrin IX chelatase


Pssm-ID: 177020 [Multi-domain]  Cd Length: 350  Bit Score: 40.74  E-value: 1.14e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 550738625 315 RATIAFVEAACAHALMHGRDHVIPDDVRAMRHMILRHRL---ILtfEAVATQVPVEEIIDGIFG 375
Cdd:CHL00081 289 RGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRHRLrkdPL--ESIDSGDKVQKVFKEVFG 350
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 99-234 1.88e-03

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 37.96  E-value: 1.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550738625   99 VLLESVPGLAKTLAASTLASTVDASFSRVQCtPDLLPSDIIGT-----QVFNpgsstFTTELGPVhanVVLLDEI----- 168
Cdd:pfam00004   1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISG-SELVSKYVGESekrlrELFE-----AAKKLAPC---VIFIDEIdalag 71

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 550738625  169 ------NRSSAKTQAAMLEAMQERQATIGgktypmpdPFLVLATQNPIDEegtyvLPQAQMDRFLLKVIVDY 234
Cdd:pfam00004  72 srgsggDSESRRVVNQLLTELDGFTSSNS--------KVIVIAATNRPDK-----LDPALLGRFDRIIEFPL 130
AAA_lid_8 pfam17868
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ...
 326-370 1.92e-03

AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.


Pssm-ID: 465541  Cd Length: 72  Bit Score: 36.39  E-value: 1.92e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 550738625  326 AHALMHGRDHVIPDDVRAMRHMILRHrliltfeaVATQVPVEEII 370
Cdd:pfam17868  36 ASAYLNGRDEVNLSDLLLLKHCLWNK--------PEDREKVRKII 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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