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Conserved domains on  [gi|410894470|gb|EKS42260|]
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hypothetical protein HMPREF9695_01352 [Afipia broomeae ATCC 49717]

Protein Classification

DUF302 domain-containing protein( domain architecture ID 10201466)

DUF302 domain-containing protein may form homodimers

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF302 cd14797
Uncharacterized domain family DUF302; These domains are mostly found in bacterial ...
 34-157 1.19e-27

Uncharacterized domain family DUF302; These domains are mostly found in bacterial single-domain proteins and have been shown to form homodimers; they may also bind zinc. Also characterized as COG3439.


:

Pssm-ID: 269820  Cd Length: 124  Bit Score: 99.55  E-value: 1.19e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410894470  34 IVKVKSAVSITVAVARIKKDIAGKGIKFFMEIDQSKLAADAKIKLRPSTLLIFGNPPLGTQFITSNPNAGLDWPVRLLLT 113
Cdd:cd14797    1 LITVTSPYSFDETVERLKEALKEEGFGVLAEIDHQATLKELGLDLPPYTILGFCNPKLATPLLQADPRIGLLLPCRVLVY 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 410894470 114 QDANGDVWAVWTDFHWIAKRHGIKDRDAQFKMATAVVQSITSTI 157
Cdd:cd14797   81 EDDDGKVWVSYMDPSALAALFGNPELKEVAKEVEEKLEKIIDAA 124
 
Name Accession Description Interval E-value
DUF302 cd14797
Uncharacterized domain family DUF302; These domains are mostly found in bacterial ...
 34-157 1.19e-27

Uncharacterized domain family DUF302; These domains are mostly found in bacterial single-domain proteins and have been shown to form homodimers; they may also bind zinc. Also characterized as COG3439.


Pssm-ID: 269820  Cd Length: 124  Bit Score: 99.55  E-value: 1.19e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410894470  34 IVKVKSAVSITVAVARIKKDIAGKGIKFFMEIDQSKLAADAKIKLRPSTLLIFGNPPLGTQFITSNPNAGLDWPVRLLLT 113
Cdd:cd14797    1 LITVTSPYSFDETVERLKEALKEEGFGVLAEIDHQATLKELGLDLPPYTILGFCNPKLATPLLQADPRIGLLLPCRVLVY 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 410894470 114 QDANGDVWAVWTDFHWIAKRHGIKDRDAQFKMATAVVQSITSTI 157
Cdd:cd14797   81 EDDDGKVWVSYMDPSALAALFGNPELKEVAKEVEEKLEKIIDAA 124
COG3439 COG3439
Uncharacterized conserved protein, DUF302 family [Function unknown];
33-153 2.43e-25

Uncharacterized conserved protein, DUF302 family [Function unknown];


Pssm-ID: 442664  Cd Length: 128  Bit Score: 93.81  E-value: 2.43e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410894470  33 GIVKVKSAVSITVAVARIKKDIAGKGIKFFMEIDQSKLAADAKIKLRPSTLLIFGNPPLGTQFITSNPNAGLDWPVRLLL 112
Cdd:COG3439    5 GLITVESPKSFDETVERLEEALKEEGFGVLAEIDVSATLKELGLDLRPYRILGFCNPKLATRLLQADPEIGLLLPCRVLV 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 410894470 113 TQDANGDVWAVWTDFHWIAKRHGIKDRDAQFKMATAVVQSI 153
Cdd:COG3439   85 YEDEDGKVWVSYMDPSALAKLFGNPELKEVAEEVEEALEKI 125
DUF302 pfam03625
Domain of unknown function DUF302; Domain is found in an undescribed set of proteins. Normally ...
 65-126 2.47e-12

Domain of unknown function DUF302; Domain is found in an undescribed set of proteins. Normally occurs uniquely within a sequence, but is found as a tandem repeat. Shows interesting phylogenetic distribution with majority of examples in bacteria and archaea, but it is also found in some fungal proteins. The hypothetical protein TT1751 from Thermus thermophilus has a beta-alpha-beta(4)-alpha structural fold.


Pssm-ID: 460993  Cd Length: 63  Bit Score: 58.27  E-value: 2.47e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 410894470   65 IDQSK-LAADAKIKLRPSTLLIFGNPPLGTQFITSNPNAGLDWPVRLLLTQDaNGDVWAVWTD 126
Cdd:pfam03625   1 IDHSAtLKAKGGLDLPPYRILGFCNPKLATELLQADPAIGLLLPCRVLVYEE-DGKTWVSYMD 62
 
Name Accession Description Interval E-value
DUF302 cd14797
Uncharacterized domain family DUF302; These domains are mostly found in bacterial ...
 34-157 1.19e-27

Uncharacterized domain family DUF302; These domains are mostly found in bacterial single-domain proteins and have been shown to form homodimers; they may also bind zinc. Also characterized as COG3439.


Pssm-ID: 269820  Cd Length: 124  Bit Score: 99.55  E-value: 1.19e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410894470  34 IVKVKSAVSITVAVARIKKDIAGKGIKFFMEIDQSKLAADAKIKLRPSTLLIFGNPPLGTQFITSNPNAGLDWPVRLLLT 113
Cdd:cd14797    1 LITVTSPYSFDETVERLKEALKEEGFGVLAEIDHQATLKELGLDLPPYTILGFCNPKLATPLLQADPRIGLLLPCRVLVY 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 410894470 114 QDANGDVWAVWTDFHWIAKRHGIKDRDAQFKMATAVVQSITSTI 157
Cdd:cd14797   81 EDDDGKVWVSYMDPSALAALFGNPELKEVAKEVEEKLEKIIDAA 124
COG3439 COG3439
Uncharacterized conserved protein, DUF302 family [Function unknown];
33-153 2.43e-25

Uncharacterized conserved protein, DUF302 family [Function unknown];


Pssm-ID: 442664  Cd Length: 128  Bit Score: 93.81  E-value: 2.43e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410894470  33 GIVKVKSAVSITVAVARIKKDIAGKGIKFFMEIDQSKLAADAKIKLRPSTLLIFGNPPLGTQFITSNPNAGLDWPVRLLL 112
Cdd:COG3439    5 GLITVESPKSFDETVERLEEALKEEGFGVLAEIDVSATLKELGLDLRPYRILGFCNPKLATRLLQADPEIGLLLPCRVLV 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 410894470 113 TQDANGDVWAVWTDFHWIAKRHGIKDRDAQFKMATAVVQSI 153
Cdd:COG3439   85 YEDEDGKVWVSYMDPSALAKLFGNPELKEVAEEVEEALEKI 125
DUF302 pfam03625
Domain of unknown function DUF302; Domain is found in an undescribed set of proteins. Normally ...
 65-126 2.47e-12

Domain of unknown function DUF302; Domain is found in an undescribed set of proteins. Normally occurs uniquely within a sequence, but is found as a tandem repeat. Shows interesting phylogenetic distribution with majority of examples in bacteria and archaea, but it is also found in some fungal proteins. The hypothetical protein TT1751 from Thermus thermophilus has a beta-alpha-beta(4)-alpha structural fold.


Pssm-ID: 460993  Cd Length: 63  Bit Score: 58.27  E-value: 2.47e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 410894470   65 IDQSK-LAADAKIKLRPSTLLIFGNPPLGTQFITSNPNAGLDWPVRLLLTQDaNGDVWAVWTD 126
Cdd:pfam03625   1 IDHSAtLKAKGGLDLPPYRILGFCNPKLATELLQADPAIGLLLPCRVLVYEE-DGKTWVSYMD 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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