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Conserved domains on  [gi|400189519|gb|EJO23609|]
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PF03994 domain protein [Selenomonas sp. FOBRC6]

Protein Classification

DUF350 domain-containing protein( domain architecture ID 13403284)

DUF350 domain-containing protein similar to Escherichia coli inner membrane protein YjfL

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjfL super family cl34668
Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown];
1-142 1.29e-09

Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown];


The actual alignment was detected with superfamily member COG3766:

Pssm-ID: 442980 [Multi-domain]  Cd Length: 133  Bit Score: 52.87  E-value: 1.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400189519   1 MIYLPDLMLTVFYAAFGILLMILANIVIDFFIPGDFAEEIRRGNRAVAWLSAGSFIGIGEILRAVILSPaydapvqdfvQ 80
Cdd:COG3766    2 MFLLAGLLAFLLYFAVALLLLIVFLAVYELITPYKEWELIRQGNLAAALALGGALIGFAIPLASAIAHS----------V 71

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 400189519  81 GVLASAVYAATGILFFVIGFFVINAWHRKyaLAEEIIRGNTAAGILVFGIFVGLSLVISGAV 142
Cdd:COG3766   72 SLLDFLIWGVVALVVQLLAYFLVRLLTPD--LSEEIEEGNVAAGILLGAISIAVGLLNAACM 131
 
Name Accession Description Interval E-value
YjfL COG3766
Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown];
1-142 1.29e-09

Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown];


Pssm-ID: 442980 [Multi-domain]  Cd Length: 133  Bit Score: 52.87  E-value: 1.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400189519   1 MIYLPDLMLTVFYAAFGILLMILANIVIDFFIPGDFAEEIRRGNRAVAWLSAGSFIGIGEILRAVILSPaydapvqdfvQ 80
Cdd:COG3766    2 MFLLAGLLAFLLYFAVALLLLIVFLAVYELITPYKEWELIRQGNLAAALALGGALIGFAIPLASAIAHS----------V 71

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 400189519  81 GVLASAVYAATGILFFVIGFFVINAWHRKyaLAEEIIRGNTAAGILVFGIFVGLSLVISGAV 142
Cdd:COG3766   72 SLLDFLIWGVVALVVQLLAYFLVRLLTPD--LSEEIEEGNVAAGILLGAISIAVGLLNAACM 131
DUF350 pfam03994
Domain of Unknown Function (DUF350); This domain occurs in a small set of of bacterial ...
 13-66 6.39e-09

Domain of Unknown Function (DUF350); This domain occurs in a small set of of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.


Pssm-ID: 427637  Cd Length: 54  Bit Score: 48.85  E-value: 6.39e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 400189519   13 YAAFGILLMILANIVIDFFIPGDFAEEIRRGNRAVAWLSAGSFIGIGEILRAVI 66
Cdd:pfam03994   1 YGLVGIVLLLLGFFVFDLLTPGKLREEIKEGNNAAAIVLAGASIAVGLIIAAAI 54
 
Name Accession Description Interval E-value
YjfL COG3766
Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown];
1-142 1.29e-09

Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown];


Pssm-ID: 442980 [Multi-domain]  Cd Length: 133  Bit Score: 52.87  E-value: 1.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400189519   1 MIYLPDLMLTVFYAAFGILLMILANIVIDFFIPGDFAEEIRRGNRAVAWLSAGSFIGIGEILRAVILSPaydapvqdfvQ 80
Cdd:COG3766    2 MFLLAGLLAFLLYFAVALLLLIVFLAVYELITPYKEWELIRQGNLAAALALGGALIGFAIPLASAIAHS----------V 71

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 400189519  81 GVLASAVYAATGILFFVIGFFVINAWHRKyaLAEEIIRGNTAAGILVFGIFVGLSLVISGAV 142
Cdd:COG3766   72 SLLDFLIWGVVALVVQLLAYFLVRLLTPD--LSEEIEEGNVAAGILLGAISIAVGLLNAACM 131
DUF350 pfam03994
Domain of Unknown Function (DUF350); This domain occurs in a small set of of bacterial ...
 13-66 6.39e-09

Domain of Unknown Function (DUF350); This domain occurs in a small set of of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.


Pssm-ID: 427637  Cd Length: 54  Bit Score: 48.85  E-value: 6.39e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 400189519   13 YAAFGILLMILANIVIDFFIPGDFAEEIRRGNRAVAWLSAGSFIGIGEILRAVI 66
Cdd:pfam03994   1 YGLVGIVLLLLGFFVFDLLTPGKLREEIKEGNNAAAIVLAGASIAVGLIIAAAI 54
DUF350 pfam03994
Domain of Unknown Function (DUF350); This domain occurs in a small set of of bacterial ...
 88-141 1.45e-04

Domain of Unknown Function (DUF350); This domain occurs in a small set of of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.


Pssm-ID: 427637  Cd Length: 54  Bit Score: 37.30  E-value: 1.45e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 400189519   88 YAATGILFFVIGFFVINAWHRkYALAEEIIRGNTAAGILVFGIFVGLSLVISGA 141
Cdd:pfam03994   1 YGLVGIVLLLLGFFVFDLLTP-GKLREEIKEGNNAAAIVLAGASIAVGLIIAAA 53
YjfL COG3766
Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown];
75-143 2.10e-03

Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown];


Pssm-ID: 442980 [Multi-domain]  Cd Length: 133  Bit Score: 35.92  E-value: 2.10e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 400189519  75 VQDFVQGVLASAVYAATGILFFVIgFFVINAWHRKYALAEEIIRGNTAAGILVFGIFVGLSLVISGAVH 143
Cdd:COG3766    1 MMFLLAGLLAFLLYFAVALLLLIV-FLAVYELITPYKEWELIRQGNLAAALALGGALIGFAIPLASAIA 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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