NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|394766842|gb|EJF47823|]
View 

UMP kinase [Actinomyces massiliensis F0489]

Protein Classification

uridine monophosphate kinase( domain architecture ID 10001676)

uridine monophosphate kinase catalyzing the conversion of UMP to UTP in pyrimidine nucleotide biosynthesis

EC:  2.7.4.22
PubMed:  18945668
SCOP:  4003224

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PyrH COG0528
Uridylate kinase [Nucleotide transport and metabolism]; Uridylate kinase is part of the ...
16-246 6.62e-129

Uridylate kinase [Nucleotide transport and metabolism]; Uridylate kinase is part of the Pathway/BioSystem: Pyrimidine biosynthesis


:

Pssm-ID: 440294 [Multi-domain]  Cd Length: 238  Bit Score: 363.95  E-value: 6.62e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  16 RRVLLKLSGEVFGG-GAVGLDPDVVSDAARQIAEAVATGVQVAVVVGGGNFFRGAELSQSGMARDRADYMGMLGTVMNAL 94
Cdd:COG0528    7 KRVLLKLSGEALAGeGGFGIDPEVLDRIAEEIKEVVDLGVEVAIVIGGGNIFRGASGAAKGMDRATADYMGMLATVMNAL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  95 ALQDFIEKAGVPARVQSAIAMTQVAEPYIPLRAIRHLEKGRVVVFGAGAGLPYFSTDTVSAQRALETRCDELLVGKNgVD 174
Cdd:COG0528   87 ALQDALEKLGVPTRVQSAIEMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPYFTTDTAAALRAIEIGADVLLKATK-VD 165
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 394766842 175 GVYTADPRKDPTARLLSRLTYERALADGLKVVDASAFALCRDNSLTMRVFGMGEGGNITRALLGEQIGTLVT 246
Cdd:COG0528  166 GVYDADPKKNPDAKKYDRLTYDEVLAKGLKVMDATAFSLCRDNNLPIIVFNMNKPGNLLRAVLGEKIGTLVS 237
 
Name Accession Description Interval E-value
PyrH COG0528
Uridylate kinase [Nucleotide transport and metabolism]; Uridylate kinase is part of the ...
16-246 6.62e-129

Uridylate kinase [Nucleotide transport and metabolism]; Uridylate kinase is part of the Pathway/BioSystem: Pyrimidine biosynthesis


Pssm-ID: 440294 [Multi-domain]  Cd Length: 238  Bit Score: 363.95  E-value: 6.62e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  16 RRVLLKLSGEVFGG-GAVGLDPDVVSDAARQIAEAVATGVQVAVVVGGGNFFRGAELSQSGMARDRADYMGMLGTVMNAL 94
Cdd:COG0528    7 KRVLLKLSGEALAGeGGFGIDPEVLDRIAEEIKEVVDLGVEVAIVIGGGNIFRGASGAAKGMDRATADYMGMLATVMNAL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  95 ALQDFIEKAGVPARVQSAIAMTQVAEPYIPLRAIRHLEKGRVVVFGAGAGLPYFSTDTVSAQRALETRCDELLVGKNgVD 174
Cdd:COG0528   87 ALQDALEKLGVPTRVQSAIEMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPYFTTDTAAALRAIEIGADVLLKATK-VD 165
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 394766842 175 GVYTADPRKDPTARLLSRLTYERALADGLKVVDASAFALCRDNSLTMRVFGMGEGGNITRALLGEQIGTLVT 246
Cdd:COG0528  166 GVYDADPKKNPDAKKYDRLTYDEVLAKGLKVMDATAFSLCRDNNLPIIVFNMNKPGNLLRAVLGEKIGTLVS 237
AAK_UMPK-PyrH-Ec cd04254
UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) ...
16-246 3.22e-111

UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).


Pssm-ID: 239787 [Multi-domain]  Cd Length: 231  Bit Score: 319.05  E-value: 3.22e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  16 RRVLLKLSGEVF-GGGAVGLDPDVVSDAARQIAEAVATGVQVAVVVGGGNFFRGAELSQSGMARDRADYMGMLGTVMNAL 94
Cdd:cd04254    1 KRVLLKLSGEALaGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMDRATADYMGMLATVINAL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  95 ALQDFIEKAGVPARVQSAIAMTQVAEPYIPLRAIRHLEKGRVVVFGAGAGLPYFSTDTVSAQRALETRCDELLVGKNgVD 174
Cdd:cd04254   81 ALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATK-VD 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 394766842 175 GVYTADPRKDPTARLLSRLTYERALADGLKVVDASAFALCRDNSLTMRVFGMGEGGNITRALLGEQIGTLVT 246
Cdd:cd04254  160 GVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231
pyrH_bact TIGR02075
uridylate kinase; This protein, also called UMP kinase, converts UMP to UDP by adding a ...
16-246 1.69e-99

uridylate kinase; This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 213681 [Multi-domain]  Cd Length: 232  Bit Score: 289.52  E-value: 1.69e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842   16 RRVLLKLSGEVF-GGGAVGLDPDVVSDAARQIAEAVATGVQVAVVVGGGNFFRGAELSQSGMARDRADYMGMLGTVMNAL 94
Cdd:TIGR02075   2 KRVLLKLSGEALaGESQFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAAELGIDRVSADYMGMLATVINGL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842   95 ALQDFIEKAGVPARVQSAIAMTQVAEPYIPLRAIRHLEKGRVVVFGAGAGLPYFSTDTVSAQRALETRCDELLVGKNgVD 174
Cdd:TIGR02075  82 ALRDALEKLGLKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTN-VD 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 394766842  175 GVYTADPRKDPTARLLSRLTYERALADGLKVVDASAFALCRDNSLTMRVFGMGEGGNITRALLGEQIGTLVT 246
Cdd:TIGR02075 161 GVYTADPKKNKDAKKYDTITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDKPGALKKVILGKGIGTLVS 232
AA_kinase pfam00696
Amino acid kinase family; This family includes kinases that phosphorylate a variety of amino ...
16-224 3.56e-22

Amino acid kinase family; This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4. Acetylglutamate kinase EC:2.7.2.8. Glutamate 5-kinase EC:2.7.2.11. Uridylate kinase EC:2.7.4.-. Carbamate kinase EC:2.7.2.2.


Pssm-ID: 395565 [Multi-domain]  Cd Length: 232  Bit Score: 91.27  E-value: 3.56e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842   16 RRVLLKLSGEVFGggavglDPDVVSDAARQIAEAVATGVQVAVVVGGGNFFRGaELSQSGMARDRA-------------D 82
Cdd:pfam00696   1 KRVVIKLGGSSLT------DKERLKRLADEIAALLEEGRKLVVVHGGGAFADG-LLALLGLSPRFArltdaetlevatmD 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842   83 YMGMLGTVMNALALQDFIEKAGVPARVQSAIAMTQVAEPY--IPLRAIRH-LEKGRVVVFGAGAGLP------YFSTDTV 153
Cdd:pfam00696  74 ALGSLGERLNAALLAAGLPAVGLPAAQLLATEAGFIDDVVtrIDTEALEElLEAGVVPVITGFIGIDpegelgRGSSDTL 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 394766842  154 SAQRALETRCDELLVGKNgVDGVYTADPRKDPTARLLSRLTYERAL--------ADGLKVVDASAFALCRDNSLTMRVF 224
Cdd:pfam00696 154 AALLAEALGADKLIILTD-VDGVYTADPRKVPDAKLIPEISYDELLellasglaTGGMKVKLPAALEAARRGGIPVVIV 231
PRK06635 PRK06635
aspartate kinase; Reviewed
173-248 2.32e-07

aspartate kinase; Reviewed


Pssm-ID: 235843 [Multi-domain]  Cd Length: 404  Bit Score: 50.88  E-value: 2.32e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYERAL---ADGLKVVDASAFALCRDNSLTMRVfgmgeggnitRALLGEQIGTLVTQE 248
Cdd:PRK06635 175 VDGVYTTDPRIVPKARKLDKISYEEMLelaSLGAKVLHPRSVEYAKKYNVPLRV----------RSSFSDNPGTLITGE 243
 
Name Accession Description Interval E-value
PyrH COG0528
Uridylate kinase [Nucleotide transport and metabolism]; Uridylate kinase is part of the ...
16-246 6.62e-129

Uridylate kinase [Nucleotide transport and metabolism]; Uridylate kinase is part of the Pathway/BioSystem: Pyrimidine biosynthesis


Pssm-ID: 440294 [Multi-domain]  Cd Length: 238  Bit Score: 363.95  E-value: 6.62e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  16 RRVLLKLSGEVFGG-GAVGLDPDVVSDAARQIAEAVATGVQVAVVVGGGNFFRGAELSQSGMARDRADYMGMLGTVMNAL 94
Cdd:COG0528    7 KRVLLKLSGEALAGeGGFGIDPEVLDRIAEEIKEVVDLGVEVAIVIGGGNIFRGASGAAKGMDRATADYMGMLATVMNAL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  95 ALQDFIEKAGVPARVQSAIAMTQVAEPYIPLRAIRHLEKGRVVVFGAGAGLPYFSTDTVSAQRALETRCDELLVGKNgVD 174
Cdd:COG0528   87 ALQDALEKLGVPTRVQSAIEMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPYFTTDTAAALRAIEIGADVLLKATK-VD 165
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 394766842 175 GVYTADPRKDPTARLLSRLTYERALADGLKVVDASAFALCRDNSLTMRVFGMGEGGNITRALLGEQIGTLVT 246
Cdd:COG0528  166 GVYDADPKKNPDAKKYDRLTYDEVLAKGLKVMDATAFSLCRDNNLPIIVFNMNKPGNLLRAVLGEKIGTLVS 237
AAK_UMPK-PyrH-Ec cd04254
UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) ...
16-246 3.22e-111

UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).


Pssm-ID: 239787 [Multi-domain]  Cd Length: 231  Bit Score: 319.05  E-value: 3.22e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  16 RRVLLKLSGEVF-GGGAVGLDPDVVSDAARQIAEAVATGVQVAVVVGGGNFFRGAELSQSGMARDRADYMGMLGTVMNAL 94
Cdd:cd04254    1 KRVLLKLSGEALaGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMDRATADYMGMLATVINAL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  95 ALQDFIEKAGVPARVQSAIAMTQVAEPYIPLRAIRHLEKGRVVVFGAGAGLPYFSTDTVSAQRALETRCDELLVGKNgVD 174
Cdd:cd04254   81 ALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATK-VD 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 394766842 175 GVYTADPRKDPTARLLSRLTYERALADGLKVVDASAFALCRDNSLTMRVFGMGEGGNITRALLGEQIGTLVT 246
Cdd:cd04254  160 GVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231
pyrH_bact TIGR02075
uridylate kinase; This protein, also called UMP kinase, converts UMP to UDP by adding a ...
16-246 1.69e-99

uridylate kinase; This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 213681 [Multi-domain]  Cd Length: 232  Bit Score: 289.52  E-value: 1.69e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842   16 RRVLLKLSGEVF-GGGAVGLDPDVVSDAARQIAEAVATGVQVAVVVGGGNFFRGAELSQSGMARDRADYMGMLGTVMNAL 94
Cdd:TIGR02075   2 KRVLLKLSGEALaGESQFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAAELGIDRVSADYMGMLATVINGL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842   95 ALQDFIEKAGVPARVQSAIAMTQVAEPYIPLRAIRHLEKGRVVVFGAGAGLPYFSTDTVSAQRALETRCDELLVGKNgVD 174
Cdd:TIGR02075  82 ALRDALEKLGLKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTN-VD 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 394766842  175 GVYTADPRKDPTARLLSRLTYERALADGLKVVDASAFALCRDNSLTMRVFGMGEGGNITRALLGEQIGTLVT 246
Cdd:TIGR02075 161 GVYTADPKKNKDAKKYDTITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDKPGALKKVILGKGIGTLVS 232
AAK_UMPK-like cd04239
AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase ...
17-246 2.12e-98

AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).


Pssm-ID: 239772 [Multi-domain]  Cd Length: 229  Bit Score: 286.74  E-value: 2.12e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  17 RVLLKLSGEVFGGGAVGLDPDVVSDAARQIAEAVATGVQVAVVVGGGNFFRGAELSQSGMARDRADYMGMLGTVMNALAL 96
Cdd:cd04239    1 RIVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPRATADYIGMLATVMNALAL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  97 QDFIEKAGVPARVQSAIAMTQVAEPYIPLRAIRHLEKGRVVVFGAGAGLPYFSTDTVSAQRALETRCDELLVGKNgVDGV 176
Cdd:cd04239   81 QDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATN-VDGV 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842 177 YTADPRKDPTARLLSRLTYERALADGLKVVDASAFALCRDNSLTMRVFGMGEGGNITRALLGEQIGTLVT 246
Cdd:cd04239  160 YDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229
AA_kinase pfam00696
Amino acid kinase family; This family includes kinases that phosphorylate a variety of amino ...
16-224 3.56e-22

Amino acid kinase family; This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4. Acetylglutamate kinase EC:2.7.2.8. Glutamate 5-kinase EC:2.7.2.11. Uridylate kinase EC:2.7.4.-. Carbamate kinase EC:2.7.2.2.


Pssm-ID: 395565 [Multi-domain]  Cd Length: 232  Bit Score: 91.27  E-value: 3.56e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842   16 RRVLLKLSGEVFGggavglDPDVVSDAARQIAEAVATGVQVAVVVGGGNFFRGaELSQSGMARDRA-------------D 82
Cdd:pfam00696   1 KRVVIKLGGSSLT------DKERLKRLADEIAALLEEGRKLVVVHGGGAFADG-LLALLGLSPRFArltdaetlevatmD 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842   83 YMGMLGTVMNALALQDFIEKAGVPARVQSAIAMTQVAEPY--IPLRAIRH-LEKGRVVVFGAGAGLP------YFSTDTV 153
Cdd:pfam00696  74 ALGSLGERLNAALLAAGLPAVGLPAAQLLATEAGFIDDVVtrIDTEALEElLEAGVVPVITGFIGIDpegelgRGSSDTL 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 394766842  154 SAQRALETRCDELLVGKNgVDGVYTADPRKDPTARLLSRLTYERAL--------ADGLKVVDASAFALCRDNSLTMRVF 224
Cdd:pfam00696 154 AALLAEALGADKLIILTD-VDGVYTADPRKVPDAKLIPEISYDELLellasglaTGGMKVKLPAALEAARRGGIPVVIV 231
AAK_UMPK-PyrH-Pf cd04253
AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase ...
82-246 2.65e-18

AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).


Pssm-ID: 239786 [Multi-domain]  Cd Length: 221  Bit Score: 80.37  E-value: 2.65e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  82 DYMGMLGTVMNALALQDFIEKA--GVPARVQSAIAMtqvaepyiplrairhLEKGRVVVfgAGAGLPYFSTDTVSAQRAL 159
Cdd:cd04253   64 DEIGIMATRLNARLLIAALGDAypPVPTSYEEALEA---------------MFTGKIVV--MGGTEPGQSTDAVAALLAE 126
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842 160 ETRCDELLVGKNgVDGVYTADPRKDPTARLLSRLTYERAL---------ADGLKVVDASAFALCRDNSLTMRVFGMGEGG 230
Cdd:cd04253  127 RLGADLLINATN-VDGVYSKDPRKDPDAKKFDRLSADELIdivgksswkAGSNEPFDPLAAKIIERSGIKTIVVDGRDPE 205
                        170
                 ....*....|....*.
gi 394766842 231 NITRALLGEQIGTLVT 246
Cdd:cd04253  206 NLERALKGEFVGTIIE 221
pyrH_arch TIGR02076
uridylate kinase, putative; This family consists of the archaeal and spirochete proteins most ...
82-246 1.99e-16

uridylate kinase, putative; This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 273956 [Multi-domain]  Cd Length: 221  Bit Score: 75.42  E-value: 1.99e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842   82 DYMGMLGTVMNALALqdfiekagvparvqsAIAMTQVAEPYIP---LRAIRHLEKGRVVVfgAGAGLPYFSTDTVSAQRA 158
Cdd:TIGR02076  63 DEIGIDATRLNAMLL---------------IAALGDDAYPKVPenfEEALEAMSLGKIVV--MGGTHPGHTTDAVAALLA 125
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  159 LETRCDELLVGKNgVDGVYTADPRKDPTARLLSRLTYERAL---------ADGLKVVDASAFALCRDNSLTMRVFGMGEG 229
Cdd:TIGR02076 126 EFSKADLLINATN-VDGVYDKDPKKDPDAKKFDKLTPEELVeivgsssvkAGSNEVVDPLAAKIIERSKIRTIVVNGRDP 204
                         170
                  ....*....|....*..
gi 394766842  230 GNITRALLGEQIGTLVT 246
Cdd:TIGR02076 205 ENLEKVLKGEHVGTIIE 221
AAK cd02115
Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like ...
81-245 4.42e-16

Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.


Pssm-ID: 239033 [Multi-domain]  Cd Length: 248  Bit Score: 75.17  E-value: 4.42e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  81 ADYMGMLGTVMNALALQDFIEKAGVPARVQSAIAMTQVAEPYIPLRAIRH---------LEKGRVVVFGAGAG------- 144
Cdd:cd02115   66 TDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKvstdrlkslLENGILPILSGFGGtdeketg 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842 145 -LPYFSTDTVSAQRALETRCDELLVGKNgVDGVYTADPRKDPTARLLSRLTYERAL---ADGLKVVDASAFALCRDNSLT 220
Cdd:cd02115  146 tLGRGGSDSTAALLAAALKADRLVILTD-VDGVYTADPRKVPDAKLLSELTYEEAAelaYAGAMVLKPKAADPAARAGIP 224
                        170       180
                 ....*....|....*....|....*
gi 394766842 221 MRVFGMGEGGNItRALLGEQIGTLV 245
Cdd:cd02115  225 VRIANTENPGAL-ALFTPDGGGTLI 248
AAK_AK cd04234
AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the ...
173-223 2.12e-08

AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria.


Pssm-ID: 239767 [Multi-domain]  Cd Length: 227  Bit Score: 53.25  E-value: 2.12e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYERA--LAD-GLKVVDASAFALCRDNSLTMRV 223
Cdd:cd04234  160 VDGIYTADPRIVPEARLIPEISYDEAleLAYfGAKVLHPRAVEPARKANIPIRV 213
AAK_AK-Hom3 cd04247
AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal ...
150-198 8.56e-08

AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.


Pssm-ID: 239780 [Multi-domain]  Cd Length: 306  Bit Score: 52.05  E-value: 8.56e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 394766842 150 TDTVSAQRALETRCDELLVGKNgVDGVYTADPRKDPTARLLSRLTYERA 198
Cdd:cd04247  215 TDLCAALCAVGLNADELQIWKE-VDGIFTADPRKVPTARLLPSITPEEA 262
AAK_UMPK-MosAB cd04255
AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA ...
116-246 1.38e-07

AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).


Pssm-ID: 239788 [Multi-domain]  Cd Length: 262  Bit Score: 50.86  E-value: 1.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842 116 TQVAEPYIPLRAIrHLEKGRVVVF------------GAGAGLPYFSTDTVSAQRALETRCDELLVGKNgVDGVYTADPRK 183
Cdd:cd04255  118 SKVGHGDLLQLPT-FLKAGRAPVIsgmppyglwehpAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKD-EDGLYTADPKK 195
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 394766842 184 DPTARLLSRLTYERALADGLK--VVDASAFALCRDNSLTMR---VFGMGEgGNITRALLGEQIGTLVT 246
Cdd:cd04255  196 NKKAEFIPEISAAELLKKDLDdlVLERPVLDLLQNARHVKEvqiVNGLVP-GNLTRALRGEHVGTIIR 262
PRK06635 PRK06635
aspartate kinase; Reviewed
173-248 2.32e-07

aspartate kinase; Reviewed


Pssm-ID: 235843 [Multi-domain]  Cd Length: 404  Bit Score: 50.88  E-value: 2.32e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYERAL---ADGLKVVDASAFALCRDNSLTMRVfgmgeggnitRALLGEQIGTLVTQE 248
Cdd:PRK06635 175 VDGVYTTDPRIVPKARKLDKISYEEMLelaSLGAKVLHPRSVEYAKKYNVPLRV----------RSSFSDNPGTLITGE 243
AAK_AKii-LysC-BS cd04261
AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal ...
173-246 3.81e-07

AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides.


Pssm-ID: 239794 [Multi-domain]  Cd Length: 239  Bit Score: 49.45  E-value: 3.81e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYERAL---ADGLKVVDASAFALCRDNSLTMRVfgmgeggnitRALLGEQIGTLVT 246
Cdd:cd04261  173 VDGVYTADPRIVPKARKLDEISYDEMLemaSLGAKVLHPRSVELAKKYGVPLRV----------LSSFSEEPGTLIT 239
AAK_AK-DapG-like cd04246
AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the ...
173-246 4.06e-07

AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains.


Pssm-ID: 239779 [Multi-domain]  Cd Length: 239  Bit Score: 49.41  E-value: 4.06e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYERAL---ADGLKVVDASAFALCRDNSLTMRVfgmgeggnitRALLGEQIGTLVT 246
Cdd:cd04246  173 VDGVYTADPRIVPKARKLDVISYDEMLemaSLGAKVLHPRSVELAKKYNVPLRV----------RSSFSENPGTLIT 239
MetL1 COG0527
Aspartate kinase [Amino acid transport and metabolism]; Aspartate kinase is part of the ...
173-199 4.79e-07

Aspartate kinase [Amino acid transport and metabolism]; Aspartate kinase is part of the Pathway/BioSystem: Lysine biosynthesis


Pssm-ID: 440293 [Multi-domain]  Cd Length: 407  Bit Score: 50.08  E-value: 4.79e-07
                         10        20
                 ....*....|....*....|....*..
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYERAL 199
Cdd:COG0527  176 VDGVYTADPRIVPDARKLPEISYEEML 202
thrA PRK09436
bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
173-198 2.33e-06

bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional


Pssm-ID: 181856 [Multi-domain]  Cd Length: 819  Bit Score: 48.23  E-value: 2.33e-06
                         10        20
                 ....*....|....*....|....*.
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYERA 198
Cdd:PRK09436 229 VDGVYTADPRVVPDARLLKSLSYQEA 254
asp_kinases TIGR00657
aspartate kinase; Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys ...
132-224 5.66e-06

aspartate kinase; Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis. [Amino acid biosynthesis, Aspartate family]


Pssm-ID: 273201 [Multi-domain]  Cd Length: 441  Bit Score: 46.58  E-value: 5.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  132 EKGRVVVFGAGAglpyfsTDTVSAQRALETRCDELLVGKNgVDGVYTADPRKDPTARLLSRLTYERAL---ADGLKVVDA 208
Cdd:TIGR00657 181 EKGETTTLGRGG------SDYTAALLAAALKADECEIYTD-VDGIYTTDPRIVPDARRIDEISYEEMLelaSFGAKVLHP 253
                          90
                  ....*....|....*.
gi 394766842  209 SAFALCRDNSLTMRVF 224
Cdd:TIGR00657 254 RTLEPAMRAKIPIVVK 269
AAK_AK-HSDH-like cd04243
AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the ...
173-198 6.58e-06

AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.


Pssm-ID: 239776 [Multi-domain]  Cd Length: 293  Bit Score: 46.01  E-value: 6.58e-06
                         10        20
                 ....*....|....*....|....*.
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYERA 198
Cdd:cd04243  226 VDGVYTADPRKVPDARLLKELSYDEA 251
AAK_AK-HSDH cd04257
AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal ...
173-198 6.67e-06

AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation.


Pssm-ID: 239790 [Multi-domain]  Cd Length: 294  Bit Score: 46.03  E-value: 6.67e-06
                         10        20
                 ....*....|....*....|....*.
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYERA 198
Cdd:cd04257  227 VDGVYSADPRKVKDARLLPSLSYQEA 252
AAK_AKi-DapG-BS cd04260
AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the ...
124-246 1.41e-05

AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains.


Pssm-ID: 239793 [Multi-domain]  Cd Length: 244  Bit Score: 45.07  E-value: 1.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842 124 PLRAIRHLEKGRVVVFGAGAG---------LPYFSTDTVSAQRALETRCDELLVGKNgVDGVYTADPRKDPTARLLSRLT 194
Cdd:cd04260  121 PKKILSALKEGDVVVVAGFQGvtedgevttLGRGGSDTTAAALGAALNAEYVEIYTD-VDGIMTADPRVVPNARILDVVS 199
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 394766842 195 YERA--LAD-GLKVVDASAFALCRDNSLTMRVfgmgeggnitRALLGEQIGTLVT 246
Cdd:cd04260  200 YNEVfqMAHqGAKVIHPRAVEIAMQANIPIRI----------RSTMSENPGTLIT 244
AAK_FomA-like cd04241
AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar ...
90-245 5.18e-05

AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).


Pssm-ID: 239774 [Multi-domain]  Cd Length: 252  Bit Score: 43.40  E-value: 5.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  90 VMNALAlqdfieKAGVPA-RVQ--SAIAMTQVAEPYIPLRAIRH-LEKGRV------VVFGAGAGLPYFSTDTVSAQRAL 159
Cdd:cd04241   85 VVDALL------EAGVPAvSVPpsSFFVTENGRIVSFDLEVIKElLDRGFVpvlhgdVVLDEGGGITILSGDDIVVELAK 158
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842 160 ETRCDELLVGKNgVDGVYTADPrkdPTARLLSRLT---YERAL-ADGLKVVDA--------SAFALCRDNSLTMRVFGMG 227
Cdd:cd04241  159 ALKPERVIFLTD-VDGVYDKPP---PDAKLIPEIDvgsLEDILaALGSAGTDVtggmagkiEELLELARRGIEVYIFNGD 234
                        170
                 ....*....|....*...
gi 394766842 228 EGGNITRALLGEQIGTLV 245
Cdd:cd04241  235 KPENLYRALLGNFIGTRI 252
PRK08210 PRK08210
aspartate kinase I; Reviewed
173-247 5.37e-05

aspartate kinase I; Reviewed


Pssm-ID: 236188 [Multi-domain]  Cd Length: 403  Bit Score: 43.69  E-value: 5.37e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYERA--LAD-GLKVVDASAFALCRDNSLTMRVfgmgeggnitRALLGEQIGTLVTQ 247
Cdd:PRK08210 180 VDGIMTADPRIVEDARLLDVVSYNEVfqMAYqGAKVIHPRAVEIAMQANIPLRI----------RSTYSDSPGTLITS 247
PRK08373 PRK08373
aspartate kinase; Validated
82-199 1.90e-04

aspartate kinase; Validated


Pssm-ID: 236250 [Multi-domain]  Cd Length: 341  Bit Score: 41.96  E-value: 1.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842  82 DYMGMLGTVMNALALQDFIEKAGVPARVQSA----IAMTQVAEPYIPLRA--------IRHLEKGRV-VVFGAGAGLPYF 148
Cdd:PRK08373 103 DYILSFGERLSAVLFAEALENEGIKGKVVDPweilEAKGSFGNAFIDIKKskrnvkilYELLERGRVpVVPGFIGNLNGF 182
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842 149 ST---------DTVSAQRALETRCDELLvgkNGVDGVYTADPRKDPTARLLSRLTYERAL 199
Cdd:PRK08373 183 RAtlgrggsdySAVALGVLLNAKAVLIM---SDVEGIYTADPKLVPSARLIPYLSYDEAL 239
PRK08961 PRK08961
bifunctional aspartate kinase/diaminopimelate decarboxylase;
173-223 3.77e-04

bifunctional aspartate kinase/diaminopimelate decarboxylase;


Pssm-ID: 236358 [Multi-domain]  Cd Length: 861  Bit Score: 41.22  E-value: 3.77e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYERA--LAD-GLKVVDASAFALCRDNSLTMRV 223
Cdd:PRK08961 237 VPGMFSANPKEVPDARLLTRLDYDEAqeIATtGAKVLHPRSIKPCRDAGIPMAI 290
AAK_AK-DapDC cd04259
AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal ...
173-223 5.33e-04

AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.


Pssm-ID: 239792 [Multi-domain]  Cd Length: 295  Bit Score: 40.60  E-value: 5.33e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYERA--LAD-GLKVVDASAFALCRDNSLTMRV 223
Cdd:cd04259  228 VPGLFTANPHEVPHARLLKRLDYDEAqeIATmGAKVLHPRCIPPARRANIPMVV 281
ProB COG0263
Glutamate 5-kinase [Amino acid transport and metabolism]; Glutamate 5-kinase is part of the ...
173-244 6.69e-04

Glutamate 5-kinase [Amino acid transport and metabolism]; Glutamate 5-kinase is part of the Pathway/BioSystem: Proline biosynthesis


Pssm-ID: 440033 [Multi-domain]  Cd Length: 371  Bit Score: 40.41  E-value: 6.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842 173 VDGVYTADPRKDPTARLLSRLT----YERALADGL-----------KVvdaSAFALCRDNSLTMRVFGMGEGGNITRALL 237
Cdd:COG0263  174 VDGLYDADPRKDPDAKLIPEVEeitpEIEAMAGGAgsglgtggmatKL---EAARIATRAGIPTVIASGREPNVLLRILA 250

                 ....*..
gi 394766842 238 GEQIGTL 244
Cdd:COG0263  251 GERVGTL 257
PRK06291 PRK06291
aspartate kinase; Provisional
173-199 1.01e-03

aspartate kinase; Provisional


Pssm-ID: 235773 [Multi-domain]  Cd Length: 465  Bit Score: 39.91  E-value: 1.01e-03
                         10        20
                 ....*....|....*....|....*..
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYERAL 199
Cdd:PRK06291 235 VDGVMTTDPRIVPEARVIPKISYIEAM 261
AAK_AK-LysC-like cd04244
AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the ...
164-198 1.51e-03

AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.


Pssm-ID: 239777 [Multi-domain]  Cd Length: 298  Bit Score: 38.89  E-value: 1.51e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 394766842 164 DELLVGKNgVDGVYTADPRKDPTARLLSRLTYERA 198
Cdd:cd04244  223 DEIWIWKD-VDGVMTADPRIVPEARTIPRLSYAEA 256
AAK_P5CS_ProBA cd04256
AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta ...
151-246 1.94e-03

AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.


Pssm-ID: 239789 [Multi-domain]  Cd Length: 284  Bit Score: 38.57  E-value: 1.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394766842 151 DTVSAQRALETRCDeLLVGKNGVDGVYTADPRkDPTARLL--------SRLTY---ERALADGLKV-VDASAFALCRDNS 218
Cdd:cd04256  181 DSLAARLAVELKAD-LLILLSDVDGLYDGPPG-SDDAKLIhtfypgdqQSITFgtkSRVGTGGMEAkVKAALWALQGGTS 258
                         90       100
                 ....*....|....*....|....*....
gi 394766842 219 LtmrVFGMG-EGGNITRALLGEQIGTLVT 246
Cdd:cd04256  259 V---VITNGmAGDVITKILEGKKVGTFFT 284
AAK_G5K_ProB cd04242
AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K ...
151-191 3.85e-03

AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requirement and the proline-triggered aggregation are greatly diminished and abolished, respectively, and more proline is needed for inhibition. Although plant and animal G5Ks are part of a bifunctional polypeptide, delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR; ProA); bacterial and yeast G5Ks are monofunctional single-polypeptide enzymes. In this CD, all three domain architectures are present: G5K, G5K+PUA, and G5K+G5PR.


Pssm-ID: 239775 [Multi-domain]  Cd Length: 251  Bit Score: 37.81  E-value: 3.85e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 394766842 151 DTVSAQRALETRCDeLLVGKNGVDGVYTADPRKDPTARLLS 191
Cdd:cd04242  145 DRLSALVAGLVNAD-LLILLSDVDGLYDKNPRENPDAKLIP 184
PRK07431 PRK07431
aspartate kinase; Provisional
173-199 4.36e-03

aspartate kinase; Provisional


Pssm-ID: 236018 [Multi-domain]  Cd Length: 587  Bit Score: 37.98  E-value: 4.36e-03
                         10        20
                 ....*....|....*....|....*..
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYERAL 199
Cdd:PRK07431 177 VPGVLTTDPRLVPEAQLMDEISCDEML 203
PRK08841 PRK08841
aspartate kinase; Validated
173-229 4.77e-03

aspartate kinase; Validated


Pssm-ID: 181563 [Multi-domain]  Cd Length: 392  Bit Score: 37.81  E-value: 4.77e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 394766842 173 VDGVYTADPRKDPTARLLSRLTYE--RALAD-GLKVVDASAFALCRDNSLTMRV---FGMGEG 229
Cdd:PRK08841 175 VDGVYTCDPRVVKNARKLDVIDFPsmEAMARkGAKVLHLPSVQHAWKHSVPLRVlssFEVGEG 237
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH