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Conserved domains on  [gi|365233134|gb|EHM74097|]
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PF06124 domain protein [Staphylococcus epidermidis 14.1.R1.SE]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF960 super family cl05581
Staphylococcal protein of unknown function (DUF960); This family consists of several ...
 1-39 7.67e-03

Staphylococcal protein of unknown function (DUF960); This family consists of several hypothetical proteins from several species of Staphylococcus. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam06124:

Pssm-ID: 399258  Cd Length: 94  Bit Score: 30.66  E-value: 7.67e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 365233134   1 MEYHYTNYekNQNALPKKVYVIreDDVDafYYVMLLPEE 39
Cdd:pfam06124 62 LEYDLPFP--YDPEYPAKVYVI--DDGD--HETMLLPEE 94
 
Name Accession Description Interval E-value
DUF960 pfam06124
Staphylococcal protein of unknown function (DUF960); This family consists of several ...
 1-39 7.67e-03

Staphylococcal protein of unknown function (DUF960); This family consists of several hypothetical proteins from several species of Staphylococcus. The function of this family is unknown.


Pssm-ID: 399258  Cd Length: 94  Bit Score: 30.66  E-value: 7.67e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 365233134   1 MEYHYTNYekNQNALPKKVYVIreDDVDafYYVMLLPEE 39
Cdd:pfam06124 62 LEYDLPFP--YDPEYPAKVYVI--DDGD--HETMLLPEE 94
 
Name Accession Description Interval E-value
DUF960 pfam06124
Staphylococcal protein of unknown function (DUF960); This family consists of several ...
 1-39 7.67e-03

Staphylococcal protein of unknown function (DUF960); This family consists of several hypothetical proteins from several species of Staphylococcus. The function of this family is unknown.


Pssm-ID: 399258  Cd Length: 94  Bit Score: 30.66  E-value: 7.67e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 365233134   1 MEYHYTNYekNQNALPKKVYVIreDDVDafYYVMLLPEE 39
Cdd:pfam06124 62 LEYDLPFP--YDPEYPAKVYVI--DDGD--HETMLLPEE 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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