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Conserved domains on  [gi|357548935|gb|EHJ30788|]
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SCP-like protein [Lacticaseibacillus rhamnosus ATCC 21052]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CAP pfam00188
Cysteine-rich secretory protein family; This is a large family of cysteine-rich secretory ...
 382-494 3.09e-07

Cysteine-rich secretory protein family; This is a large family of cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) that are found in a wide range of organizms, including prokaryotes and non-vertebrate eukaryotes, The nine subfamilies of the mammalian CAP 'super'family include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilization. The overall protein structural conservation within the CAP 'super'family results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences. The Ca++-chelating function would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Swiss:Q91055 blocks the Ca++ transporting ryanodine receptors.


:

Pssm-ID: 395136  Cd Length: 117  Bit Score: 49.12  E-value: 3.09e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935  382 YVNELRALNGQSALTISERDTSRAQQRVRAIVENFNHEAVSHATENIGTNTGITDH--MRSNQEIAYYMVMAWYDETDNP 459
Cdd:pfam00188   3 LHNEYRAAAGLPPLSWDNELAAAAQDHAKYCADNGSHNHRSPYGGNIYARVVAAGYalGDAGPDSAEDAVDGWYDSPGTY 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 357548935  460 EPlgnghyGHRANLIYGG-PSMGVSFYRPPAGSAEF 494
Cdd:pfam00188  83 NC------GHRTNLLWPKsTKVGCAVAKCGDGGTYY 112
Big_3 super family cl06524
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like ...
 254-300 5.37e-04

Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


The actual alignment was detected with superfamily member pfam07523:

Pssm-ID: 400072 [Multi-domain]  Cd Length: 67  Bit Score: 38.43  E-value: 5.37e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 357548935  254 KDTLLAKKSSWTPDINFVSATNSDG-ASVQLEDISITGTVNPAYEGTY 300
Cdd:pfam07523   3 HKTTYYVGDSWDAEDNFVSATYKDGdAEVPFDDVEVSGTVDSTKAGEY 50
Big_3 super family cl06524
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like ...
 157-204 7.80e-04

Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


The actual alignment was detected with superfamily member pfam07523:

Pssm-ID: 400072 [Multi-domain]  Cd Length: 67  Bit Score: 38.05  E-value: 7.80e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 357548935  157 TIAQKSSWTPEENFLNANDSNGQA-VPVDAIQVIGTVHPAIVGTYFVQY 204
Cdd:pfam07523   6 TYYVGDSWDAEDNFVSATYKDGDAeVPFDDVEVSGTVDSTKAGEYTVTY 54
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
42-295 1.60e-03

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14949:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 944  Bit Score: 41.63  E-value: 1.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935  42 VAFSSLHPVT---ASTKANEEQPATHTATSSVASDRASPNITSVASGSKDSSPPANSFEANGAQQKTVQPLETMKTATAN 118
Cdd:PRK14949 355 VAFVPEKPVKrwqVDDPAEISLPEGQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQTTAQQQVQAANAEAVAEADA 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935 119 NPEPEAKEPVSGDQNEKHDLT-----------AADPNTNQSPSIATAPVTIAQKSSWTPEENFLNANDSNGQA--VPVDA 185
Cdd:PRK14949 435 SAEPADTVEQALDDESELLAAlnaeqavilsqAQSQGFEASSSLDADNSAVPEQIDSTAEQSVVNPSVTDTQVddTSASN 514

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935 186 IQVIGTVHP---------AIVGTYFVQYAFTDAPTG---KDVSQFSSA------------TVTNQASASDERQIGGHVLP 241
Cdd:PRK14949 515 NSAADNTVDdnysaedtlESNGLDEGDYAQDSAPLDayqDDYVAFSSEsynalsddeqhsANVQSAQSAAEAQPSSQSLS 594

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 357548935 242 PTPSETVAAIKTK-----DTLLAKKSSWTPDINFVSATNSDGASVQLEDISITGTVNPA 295
Cdd:PRK14949 595 PISAVTTAAASLAdddilDAVLAARDSLLSDLDALSPKEGDGKKSSADRKPKTPPSRAP 653
 
Name Accession Description Interval E-value
CAP pfam00188
Cysteine-rich secretory protein family; This is a large family of cysteine-rich secretory ...
 382-494 3.09e-07

Cysteine-rich secretory protein family; This is a large family of cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) that are found in a wide range of organizms, including prokaryotes and non-vertebrate eukaryotes, The nine subfamilies of the mammalian CAP 'super'family include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilization. The overall protein structural conservation within the CAP 'super'family results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences. The Ca++-chelating function would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Swiss:Q91055 blocks the Ca++ transporting ryanodine receptors.


Pssm-ID: 395136  Cd Length: 117  Bit Score: 49.12  E-value: 3.09e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935  382 YVNELRALNGQSALTISERDTSRAQQRVRAIVENFNHEAVSHATENIGTNTGITDH--MRSNQEIAYYMVMAWYDETDNP 459
Cdd:pfam00188   3 LHNEYRAAAGLPPLSWDNELAAAAQDHAKYCADNGSHNHRSPYGGNIYARVVAAGYalGDAGPDSAEDAVDGWYDSPGTY 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 357548935  460 EPlgnghyGHRANLIYGG-PSMGVSFYRPPAGSAEF 494
Cdd:pfam00188  83 NC------GHRTNLLWPKsTKVGCAVAKCGDGGTYY 112
Big_3 pfam07523
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like ...
 254-300 5.37e-04

Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


Pssm-ID: 400072 [Multi-domain]  Cd Length: 67  Bit Score: 38.43  E-value: 5.37e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 357548935  254 KDTLLAKKSSWTPDINFVSATNSDG-ASVQLEDISITGTVNPAYEGTY 300
Cdd:pfam07523   3 HKTTYYVGDSWDAEDNFVSATYKDGdAEVPFDDVEVSGTVDSTKAGEY 50
Big_3 pfam07523
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like ...
 157-204 7.80e-04

Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


Pssm-ID: 400072 [Multi-domain]  Cd Length: 67  Bit Score: 38.05  E-value: 7.80e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 357548935  157 TIAQKSSWTPEENFLNANDSNGQA-VPVDAIQVIGTVHPAIVGTYFVQY 204
Cdd:pfam07523   6 TYYVGDSWDAEDNFVSATYKDGDAeVPFDDVEVSGTVDSTKAGEYTVTY 54
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 42-295 1.60e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 41.63  E-value: 1.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935  42 VAFSSLHPVT---ASTKANEEQPATHTATSSVASDRASPNITSVASGSKDSSPPANSFEANGAQQKTVQPLETMKTATAN 118
Cdd:PRK14949 355 VAFVPEKPVKrwqVDDPAEISLPEGQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQTTAQQQVQAANAEAVAEADA 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935 119 NPEPEAKEPVSGDQNEKHDLT-----------AADPNTNQSPSIATAPVTIAQKSSWTPEENFLNANDSNGQA--VPVDA 185
Cdd:PRK14949 435 SAEPADTVEQALDDESELLAAlnaeqavilsqAQSQGFEASSSLDADNSAVPEQIDSTAEQSVVNPSVTDTQVddTSASN 514

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935 186 IQVIGTVHP---------AIVGTYFVQYAFTDAPTG---KDVSQFSSA------------TVTNQASASDERQIGGHVLP 241
Cdd:PRK14949 515 NSAADNTVDdnysaedtlESNGLDEGDYAQDSAPLDayqDDYVAFSSEsynalsddeqhsANVQSAQSAAEAQPSSQSLS 594

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 357548935 242 PTPSETVAAIKTK-----DTLLAKKSSWTPDINFVSATNSDGASVQLEDISITGTVNPA 295
Cdd:PRK14949 595 PISAVTTAAASLAdddilDAVLAARDSLLSDLDALSPKEGDGKKSSADRKPKTPPSRAP 653
CAP_bacterial cd05379
Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 ...
 379-490 5.47e-03

Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins; Little is known about bacterial and archaeal members of the CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family. The wider family of CAP domain containing proteins includes plant pathogenesis-related protein 1 (PR-1), cysteine-rich secretory proteins (CRISPs), and allergen 5 from vespid venom, among others. Studies of eukaryotic proteins show that CAP domains have several functions, including the binding of cholesterol, lipids and heparan sulfate. This group includes Borrelia burgdorferi outer surface protein BB0689, which does not bind to cholesterol, lipids, or heparan sulfate, and whose function is unknown.


Pssm-ID: 349398  Cd Length: 120  Bit Score: 36.97  E-value: 5.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935 379 FHQYVNELRALNGQSALTISERDTSRAQQRVRAIVEN--FNHE--------------AVSHATENIGTNTGitdhmrSNQ 442
Cdd:cd05379    4 VLELINEYRAKAGLPPLSWDPRLEKAAQDHAEDMAANgyFSHTgpdgssdraaragyWYRGAGENIAYGQG------SAE 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 357548935 443 EIayymVMAWYDETdnpeplgnghyGHRANLIygGP---SMGVSFYRPPAG 490
Cdd:cd05379   78 EA----VNQWINSP-----------GHRANIL--DPdftEIGVGVAYNSSG 111
 
Name Accession Description Interval E-value
CAP pfam00188
Cysteine-rich secretory protein family; This is a large family of cysteine-rich secretory ...
 382-494 3.09e-07

Cysteine-rich secretory protein family; This is a large family of cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) that are found in a wide range of organizms, including prokaryotes and non-vertebrate eukaryotes, The nine subfamilies of the mammalian CAP 'super'family include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilization. The overall protein structural conservation within the CAP 'super'family results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences. The Ca++-chelating function would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Swiss:Q91055 blocks the Ca++ transporting ryanodine receptors.


Pssm-ID: 395136  Cd Length: 117  Bit Score: 49.12  E-value: 3.09e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935  382 YVNELRALNGQSALTISERDTSRAQQRVRAIVENFNHEAVSHATENIGTNTGITDH--MRSNQEIAYYMVMAWYDETDNP 459
Cdd:pfam00188   3 LHNEYRAAAGLPPLSWDNELAAAAQDHAKYCADNGSHNHRSPYGGNIYARVVAAGYalGDAGPDSAEDAVDGWYDSPGTY 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 357548935  460 EPlgnghyGHRANLIYGG-PSMGVSFYRPPAGSAEF 494
Cdd:pfam00188  83 NC------GHRTNLLWPKsTKVGCAVAKCGDGGTYY 112
Big_3 pfam07523
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like ...
 254-300 5.37e-04

Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


Pssm-ID: 400072 [Multi-domain]  Cd Length: 67  Bit Score: 38.43  E-value: 5.37e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 357548935  254 KDTLLAKKSSWTPDINFVSATNSDG-ASVQLEDISITGTVNPAYEGTY 300
Cdd:pfam07523   3 HKTTYYVGDSWDAEDNFVSATYKDGdAEVPFDDVEVSGTVDSTKAGEY 50
Big_3 pfam07523
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like ...
 157-204 7.80e-04

Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


Pssm-ID: 400072 [Multi-domain]  Cd Length: 67  Bit Score: 38.05  E-value: 7.80e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 357548935  157 TIAQKSSWTPEENFLNANDSNGQA-VPVDAIQVIGTVHPAIVGTYFVQY 204
Cdd:pfam07523   6 TYYVGDSWDAEDNFVSATYKDGDAeVPFDDVEVSGTVDSTKAGEYTVTY 54
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 42-295 1.60e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 41.63  E-value: 1.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935  42 VAFSSLHPVT---ASTKANEEQPATHTATSSVASDRASPNITSVASGSKDSSPPANSFEANGAQQKTVQPLETMKTATAN 118
Cdd:PRK14949 355 VAFVPEKPVKrwqVDDPAEISLPEGQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQTTAQQQVQAANAEAVAEADA 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935 119 NPEPEAKEPVSGDQNEKHDLT-----------AADPNTNQSPSIATAPVTIAQKSSWTPEENFLNANDSNGQA--VPVDA 185
Cdd:PRK14949 435 SAEPADTVEQALDDESELLAAlnaeqavilsqAQSQGFEASSSLDADNSAVPEQIDSTAEQSVVNPSVTDTQVddTSASN 514

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935 186 IQVIGTVHP---------AIVGTYFVQYAFTDAPTG---KDVSQFSSA------------TVTNQASASDERQIGGHVLP 241
Cdd:PRK14949 515 NSAADNTVDdnysaedtlESNGLDEGDYAQDSAPLDayqDDYVAFSSEsynalsddeqhsANVQSAQSAAEAQPSSQSLS 594

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 357548935 242 PTPSETVAAIKTK-----DTLLAKKSSWTPDINFVSATNSDGASVQLEDISITGTVNPA 295
Cdd:PRK14949 595 PISAVTTAAASLAdddilDAVLAARDSLLSDLDALSPKEGDGKKSSADRKPKTPPSRAP 653
CAP_bacterial cd05379
Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 ...
 379-490 5.47e-03

Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins; Little is known about bacterial and archaeal members of the CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family. The wider family of CAP domain containing proteins includes plant pathogenesis-related protein 1 (PR-1), cysteine-rich secretory proteins (CRISPs), and allergen 5 from vespid venom, among others. Studies of eukaryotic proteins show that CAP domains have several functions, including the binding of cholesterol, lipids and heparan sulfate. This group includes Borrelia burgdorferi outer surface protein BB0689, which does not bind to cholesterol, lipids, or heparan sulfate, and whose function is unknown.


Pssm-ID: 349398  Cd Length: 120  Bit Score: 36.97  E-value: 5.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935 379 FHQYVNELRALNGQSALTISERDTSRAQQRVRAIVEN--FNHE--------------AVSHATENIGTNTGitdhmrSNQ 442
Cdd:cd05379    4 VLELINEYRAKAGLPPLSWDPRLEKAAQDHAEDMAANgyFSHTgpdgssdraaragyWYRGAGENIAYGQG------SAE 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 357548935 443 EIayymVMAWYDETdnpeplgnghyGHRANLIygGP---SMGVSFYRPPAG 490
Cdd:cd05379   78 EA----VNQWINSP-----------GHRANIL--DPdftEIGVGVAYNSSG 111
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
25-146 8.57e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 39.07  E-value: 8.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548935  25 RGKWMKASEVVLSFSVLVAFSSL----HPVTASTKANEEQPATHTATSSVASDRASPNITSVASGSKDSSPPANSFEANG 100
Cdd:PRK11907   2 MKHYFSKSAVALTLALLTASNPKlaqaEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETS 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 357548935 101 AQQKTVQPLETMKTATANNPEPEAKEPVSGDQNEKHDLTAADPNTN 146
Cdd:PRK11907  82 DPTSEATDTTTSEARTVTPAATETSKPVEGQTVDVRILSTTDLHTN 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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