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Conserved domains on  [gi|336469706|gb|EGO57868|]
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hypothetical protein NEUTE1DRAFT_122217 [Neurospora tetrasperma FGSC 2508]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10767 super family cl35946
chaperone protein DnaJ; Provisional
 648-711 9.47e-36

chaperone protein DnaJ; Provisional


The actual alignment was detected with superfamily member PRK10767:

Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 139.12  E-value: 9.47e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK10767   4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYD 67
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 288-593 7.17e-28

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 113.67  E-value: 7.17e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 288 PAEQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLA 367
Cdd:COG2956    4 PVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 368 RIYTSLGRPEEAIATFgriqpppsakdmapardmlnyiqaaqkalqegtaasmvlhpldmaERLLGIGASRPRKWVLMrG 447
Cdd:COG2956   84 QDYLKAGLLDRAEELL---------------------------------------------EKLLELDPDDAEALRLL-A 117

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 448 EALLRLGDINslgEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAikWLRIvqrldrmk 527
Cdd:COG2956  118 EIYEQEGDWE---KAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARA--LLLL-------- 184

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 336469706 528 geGNDEYKAGRWQNALEKYTAALEIDPSnkgtNSKILQNRALCYTKLKQFDEAIADCERAISLDPS 593
Cdd:COG2956  185 --AELYLEQGDYEEAIAALERALEQDPD----YLPALPRLAELYEKLGDPEEALELLRKALELDPS 244
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 567-644 1.07e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


:

Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.41  E-value: 1.07e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 336469706 567 RALCYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKALQELEPEDRTIAQEVKRAELELKK 644
Cdd:COG5010   60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQ 137
PTZ00449 super family cl33186
104 kDa microneme/rhoptry antigen; Provisional
 33-298 9.99e-04

104 kDa microneme/rhoptry antigen; Provisional


The actual alignment was detected with superfamily member PTZ00449:

Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 42.75  E-value: 9.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  33 SGTSGPRSPYSHAKRSHSQSPPPPPPPPKSLRPPAQTQQHRlsPTK-PVFSS-PSGTRSPSAKKTHRSDSQPRRDHSP-- 108
Cdd:PTZ00449 528 EGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHK--PSKiPTLSKkPEFPKDPKHPKDPEEPKKPKRPRSAqr 605

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 109 PTPPPHYNLP-----PTPPSGSTSRSASARDPTkhsssssshqprsstssrssfgrhPVDPAAASDSRSRSTSFRRKKVD 183
Cdd:PTZ00449 606 PTRPKSPKLPelldiPKSPKRPESPKSPKRPPP------------------------PQRPSSPERPEGPKIIKSPKPPK 661

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 184 TDIHPLNlpPEQRKRFSDLSGFSVRNSMEFDNKENGAASAASPPPPPHKQQPQDQQAQQKPTPPA----HGSTFTVPmsN 259
Cdd:PTZ00449 662 SPKPPFD--PKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKlprdEEFPFEPI--G 737

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 336469706 260 GADAAQTNDGEVPTPPPHRSQ--PTTPVQSPAEQ--AEGFKNE 298
Cdd:PTZ00449 738 DPDAEQPDDIEFFTPPEEERTffHETPADTPLPDilAEEFKEE 780
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 648-711 9.47e-36

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 139.12  E-value: 9.47e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK10767   4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYD 67
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 649-711 6.87e-32

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 117.96  E-value: 6.87e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 336469706  649 DYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 649-711 4.69e-30

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 122.32  E-value: 4.69e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 336469706  649 DYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPgDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYD 62
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 649-711 1.17e-28

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 111.72  E-value: 1.17e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 336469706 649 DYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDPEAEEKFKEINEAYEVLSDPEKRAAYD 63
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 288-593 7.17e-28

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 113.67  E-value: 7.17e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 288 PAEQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLA 367
Cdd:COG2956    4 PVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 368 RIYTSLGRPEEAIATFgriqpppsakdmapardmlnyiqaaqkalqegtaasmvlhpldmaERLLGIGASRPRKWVLMrG 447
Cdd:COG2956   84 QDYLKAGLLDRAEELL---------------------------------------------EKLLELDPDDAEALRLL-A 117

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 448 EALLRLGDINslgEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAikWLRIvqrldrmk 527
Cdd:COG2956  118 EIYEQEGDWE---KAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARA--LLLL-------- 184

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 336469706 528 geGNDEYKAGRWQNALEKYTAALEIDPSnkgtNSKILQNRALCYTKLKQFDEAIADCERAISLDPS 593
Cdd:COG2956  185 --AELYLEQGDYEEAIAALERALEQDPD----YLPALPRLAELYEKLGDPEEALELLRKALELDPS 244
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
645-723 1.33e-25

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 110.68  E-value: 1.33e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 645 SQRKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNpGDASAEARFKDISEAYETLSDSQKRARYDS-GDDLVDPSDMF 723
Cdd:NF037946   2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRN-KAPDAAEIFAEINEAYEVLSNPEKRANYDKyGHDGVDGEGGF 80
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 649-703 8.62e-25

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 97.62  E-value: 8.62e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 336469706 649 DYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSD 703
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
DnaJ smart00271
DnaJ molecular chaperone homology domain;
648-706 8.83e-24

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 94.99  E-value: 8.83e-24
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706   648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDAS-AEARFKDISEAYETLSDSQK 706
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEeAEEKFKEINEAYEVLSDPEK 60
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 290-654 2.15e-17

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 86.58  E-value: 2.15e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  290 EQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATYlGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARI 369
Cdd:TIGR00990 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYY-SNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  370 YTSLGRPEEAIATFGRIQPPPSAKD--MAPARDMLNYIQAAQKALQEGTAASMVLHPLDMAERLLGIGASRPRKWVLMR- 446
Cdd:TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNeqSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDs 283

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  447 -------GEALLRLG-----------------------DINSLGEAQNIAMSL--------------------------- 469
Cdd:TIGR00990 284 neldeetGNGQLQLGlkspeskadesyeeaarafekalDLGKLGEKEAIALNLrgtfkclkgkhlealadlsksieldpr 363

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  470 ----------------------------LRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLRIVQ 521
Cdd:TIGR00990 364 vtqsyikrasmnlelgdpdkaeedfdkaLKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  522 --------------RLDRMKGEGNDEYK--------AGRWQNALEKYTAALEIDPSNKGTNSKI--LQNRALCYTKLKQ- 576
Cdd:TIGR00990 444 ykegsiassmatfrRCKKNFPEAPDVYNyygellldQNKFDEAIEKFDTAIELEKETKPMYMNVlpLINKALALFQWKQd 523

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 336469706  577 FDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKALQELEPEDRTIAQEVKRAELELKKSQRKDYYKIL 654
Cdd:TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQEDYPVL 601
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 357-556 1.28e-10

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 65.10  E-value: 1.28e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  357 PNNPKILLRLARIYTSLGRPEEAIATFGRIQPPPSAKDMAPARDMlNYIQ------AAQKALQ-------EGTAASMVLH 423
Cdd:PRK11447  178 PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWY-GQIKdmpvsdASVAALQkylqvfsDGDSVAAARS 256

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  424 PLDMAERLLGIGASRPRkwvlMRGEALLRLGdinSLGEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKA 503
Cdd:PRK11447  257 QLAEQQKQLADPAFRAR----AQGLAAVDSG---QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKA 329

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 336469706  504 LSCDPDFKDAIKW--LRIVQRLDRMKGEGNDEYKAGRWQNALEKYTAALEIDPSN 556
Cdd:PRK11447  330 LALDPHSSNRDKWesLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD 384
TPR_1 pfam00515
Tetratricopeptide repeat;
561-594 1.98e-08

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 50.50  E-value: 1.98e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 336469706  561 SKILQNRALCYTKLKQFDEAIADCERAISLDPSY 594
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 466-625 2.36e-08

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 55.08  E-value: 2.36e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 466 AMSLL----RNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLRIVqrLDRMKgegndeykagRWQN 541
Cdd:NF040959  56 AVRYLeqvaRIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVA--LLKIK----------DYEK 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 542 ALEKYTAALEIDPSNKGTNSKIlqnrALCYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKAL 621
Cdd:NF040959 124 AVEDLEEALEEKPDNFNLNYRL----GLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFKKA 199


                 ....
gi 336469706 622 QELE 625
Cdd:NF040959 200 MELE 203
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 331-385 3.51e-08

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 55.71  E-value: 3.51e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 336469706 331 NRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATFGR 385
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLR 59
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 561-594 2.12e-07

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 47.44  E-value: 2.12e-07
                           10        20        30
                   ....*....|....*....|....*....|....
gi 336469706   561 SKILQNRALCYTKLKQFDEAIADCERAISLDPSY 594
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 567-644 1.07e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.41  E-value: 1.07e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 336469706 567 RALCYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKALQELEPEDRTIAQEVKRAELELKK 644
Cdd:COG5010   60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQ 137
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 33-298 9.99e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 42.75  E-value: 9.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  33 SGTSGPRSPYSHAKRSHSQSPPPPPPPPKSLRPPAQTQQHRlsPTK-PVFSS-PSGTRSPSAKKTHRSDSQPRRDHSP-- 108
Cdd:PTZ00449 528 EGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHK--PSKiPTLSKkPEFPKDPKHPKDPEEPKKPKRPRSAqr 605

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 109 PTPPPHYNLP-----PTPPSGSTSRSASARDPTkhsssssshqprsstssrssfgrhPVDPAAASDSRSRSTSFRRKKVD 183
Cdd:PTZ00449 606 PTRPKSPKLPelldiPKSPKRPESPKSPKRPPP------------------------PQRPSSPERPEGPKIIKSPKPPK 661

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 184 TDIHPLNlpPEQRKRFSDLSGFSVRNSMEFDNKENGAASAASPPPPPHKQQPQDQQAQQKPTPPA----HGSTFTVPmsN 259
Cdd:PTZ00449 662 SPKPPFD--PKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKlprdEEFPFEPI--G 737

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 336469706 260 GADAAQTNDGEVPTPPPHRSQ--PTTPVQSPAEQ--AEGFKNE 298
Cdd:PTZ00449 738 DPDAEQPDDIEFFTPPEEERTffHETPADTPLPDilAEEFKEE 780
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 648-711 9.47e-36

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 139.12  E-value: 9.47e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK10767   4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYD 67
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 649-711 6.87e-32

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 117.96  E-value: 6.87e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 336469706  649 DYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 649-711 4.69e-30

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 122.32  E-value: 4.69e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 336469706  649 DYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPgDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYD 62
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 646-719 2.97e-29

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 120.68  E-value: 2.97e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 336469706 646 QRKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYDS-GDDLVDP 719
Cdd:PRK14277   3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQfGHAAFDP 77
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 649-711 1.17e-28

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 111.72  E-value: 1.17e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 336469706 649 DYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDPEAEEKFKEINEAYEVLSDPEKRAAYD 63
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 288-593 7.17e-28

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 113.67  E-value: 7.17e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 288 PAEQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLA 367
Cdd:COG2956    4 PVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 368 RIYTSLGRPEEAIATFgriqpppsakdmapardmlnyiqaaqkalqegtaasmvlhpldmaERLLGIGASRPRKWVLMrG 447
Cdd:COG2956   84 QDYLKAGLLDRAEELL---------------------------------------------EKLLELDPDDAEALRLL-A 117

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 448 EALLRLGDINslgEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAikWLRIvqrldrmk 527
Cdd:COG2956  118 EIYEQEGDWE---KAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARA--LLLL-------- 184

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 336469706 528 geGNDEYKAGRWQNALEKYTAALEIDPSnkgtNSKILQNRALCYTKLKQFDEAIADCERAISLDPS 593
Cdd:COG2956  185 --AELYLEQGDYEEAIAALERALEQDPD----YLPALPRLAELYEKLGDPEEALELLRKALELDPS 244
PRK14297 PRK14297
molecular chaperone DnaJ;
648-711 8.18e-26

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 110.26  E-value: 8.18e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14297   4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYD 67
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
645-723 1.33e-25

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 110.68  E-value: 1.33e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 645 SQRKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNpGDASAEARFKDISEAYETLSDSQKRARYDS-GDDLVDPSDMF 723
Cdd:NF037946   2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRN-KAPDAAEIFAEINEAYEVLSNPEKRANYDKyGHDGVDGEGGF 80
PRK14289 PRK14289
molecular chaperone DnaJ;
645-711 1.34e-25

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 109.54  E-value: 1.34e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 336469706 645 SQRKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14289   2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYD 68
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
319-657 2.05e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 105.86  E-value: 2.05e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 319 IVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATFgriqpppsakdmapa 398
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADY--------------- 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 399 rdmlnyiqaaQKALQEgtaasmvlhpldmaerllgigasrprkwvlmrgeallrlgdinslgeaqniamsllrnNSQDPE 478
Cdd:COG0457   66 ----------EQALEL----------------------------------------------------------DPDDAE 77

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 479 ALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLrivqrldrmkgeGNDEYKAGRWQNALEKYTAALEIDPSnkg 558
Cdd:COG0457   78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNL------------GLALLELGRYDEAIEAYERALELDPD--- 142

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 559 tNSKILQNRALCYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKALQELEPEDRTIAQEVKRA 638
Cdd:COG0457  143 -DADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221

                        330
                 ....*....|....*....
gi 336469706 639 ELELKKSQRKDYYKILGID 657
Cdd:COG0457  222 LLLLALALLLALRLAALAL 240
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 649-709 2.83e-25

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 99.30  E-value: 2.83e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 336469706 649 DYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRAR 709
Cdd:COG5407    1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGDPKAEERFKEINEAYELLSDAEKRAR 61
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 649-711 4.34e-25

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 108.39  E-value: 4.34e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 336469706 649 DYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14284   2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYD 64
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 649-703 8.62e-25

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 97.62  E-value: 8.62e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 336469706 649 DYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSD 703
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 645-711 9.24e-25

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 106.77  E-value: 9.24e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 336469706 645 SQRKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14294   1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYD 67
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 647-711 5.84e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 104.89  E-value: 5.84e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 336469706 647 RKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14281   2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYD 66
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 299-591 7.18e-24

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 102.11  E-value: 7.18e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 299 GNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEE 378
Cdd:COG2956   49 GNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEK 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 379 AIATfgriqpppsakdmapardmlnyiqaaqkalqegtaasmvlhpldmAERLLGIGASRPRKWVLMrGEALLRLGDINs 458
Cdd:COG2956  129 AIEV---------------------------------------------LERLLKLGPENAHAYCEL-AELYLEQGDYD- 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 459 lgEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLRIVQRldrmkgegndeyKAGR 538
Cdd:COG2956  162 --EAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYE------------KLGD 227

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 336469706 539 WQNALEKYTAALEIDPSNkgtnsKILQNRALCYTKLKQFDEAIADCERAISLD 591
Cdd:COG2956  228 PEEALELLRKALELDPSD-----DLLLALADLLERKEGLEAALALLERQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
290-553 7.27e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.24  E-value: 7.27e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 290 EQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARI 369
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 370 YTSLGRPEEAIATFgriqpppsakdmapardmlnyiqaaQKALQegtaasmvLHPLDmaerllgigasrpRKWVLMRGEA 449
Cdd:COG0457   86 LQALGRYEEALEDY-------------------------DKALE--------LDPDD-------------AEALYNLGLA 119

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 450 LLRLGDinsLGEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLRIVQRLDRMKGE 529
Cdd:COG0457  120 LLELGR---YDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVL 196

                        250       260
                 ....*....|....*....|....
gi 336469706 530 GNDEYKAGRWQNALEKYTAALEID 553
Cdd:COG0457  197 LALLLALEQALRKKLAILTLAALA 220
DnaJ smart00271
DnaJ molecular chaperone homology domain;
648-706 8.83e-24

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 94.99  E-value: 8.83e-24
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706   648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDAS-AEARFKDISEAYETLSDSQK 706
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEeAEEKFKEINEAYEVLSDPEK 60
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
470-719 9.96e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 100.85  E-value: 9.96e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 470 LRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLrivqrldrmkgeGNDEYKAGRWQNALEKYTAA 549
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNL------------GLAYLRLGRYEEALADYEQA 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 550 LEIDPSNkgtnSKILQNRALCYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKALQELEPEDR 629
Cdd:COG0457   69 LELDPDD----AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 630 TIAQEVKRAELELKKSQR-KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRA 708
Cdd:COG0457  145 DALYNLGIALEKLGRYEEaLELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                        250
                 ....*....|.
gi 336469706 709 RYDSGDDLVDP 719
Cdd:COG0457  225 LALALLLALRL 235
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 648-711 1.33e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 103.63  E-value: 1.33e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKN--PGdasAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14276   4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINkePG---AEEKYKEVQEAYETLSDPQKRAAYD 66
PRK14295 PRK14295
molecular chaperone DnaJ;
648-711 1.51e-23

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 103.78  E-value: 1.51e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14295   9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYD 72
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 647-711 2.47e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 102.51  E-value: 2.47e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 336469706 647 RKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14301   3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYD 67
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 645-723 5.48e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 101.82  E-value: 5.48e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 645 SQRKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPgDASAEARFKDISEAYETLSDSQKRARYD----SGDDLVDPS 720
Cdd:PRK14283   2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSE-EEGAEEKFKEISEAYAVLSDDEKRQRYDqfghAGMDGFSQE 80


                 ...
gi 336469706 721 DMF 723
Cdd:PRK14283  81 DIF 83
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 645-711 6.89e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 101.46  E-value: 6.89e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 336469706 645 SQRKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPgDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14298   2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYD 67
PRK14280 PRK14280
molecular chaperone DnaJ;
647-711 1.12e-22

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 100.95  E-value: 1.12e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 336469706 647 RKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPgDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14280   3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQKRAQYD 66
PRK14279 PRK14279
molecular chaperone DnaJ;
648-711 1.18e-22

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 100.96  E-value: 1.18e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14279   9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYD 72
PRK14293 PRK14293
molecular chaperone DnaJ;
649-711 9.85e-22

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 97.75  E-value: 9.85e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 336469706 649 DYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPgDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14293   4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYD 65
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 648-715 1.22e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 97.82  E-value: 1.22e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDAsAEARFKDISEAYETLSDSQKRARYDSGDD 715
Cdd:PRK14278   3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEE-AQEKFKEISVAYEVLSDPEKRRIVDLGGD 69
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 648-711 2.59e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 96.54  E-value: 2.59e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGD-ASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14290   3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNkAEAEEKFKEISEAYEVLSDPQKRRQYD 67
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 646-711 3.48e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 96.02  E-value: 3.48e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 336469706 646 QRKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGD-ASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14282   2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENrKEAEQKFKEIQEAYEVLSDPQKRAMYD 68
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 646-711 9.97e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 94.84  E-value: 9.97e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 336469706 646 QRKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPgDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14291   1 AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNK-NPEAEEKFKEINEAYQVLSDPEKRKLYD 65
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 362-632 2.89e-20

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 95.83  E-value: 2.89e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 362 ILLRLARIYTSLGRPEEAIATFGRIQPPPSAKDMAPARDMLNYIQAAQKALQEGTAASMVLHPLDMAERLLGIGAsrprk 441
Cdd:COG3914    5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAA----- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 442 WVLMRGEALLRLGDinsLGEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAikWLRIVQ 521
Cdd:COG3914   80 LLELAALLLQALGR---YEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA--YLNLGE 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 522 RLDRMkgegndeykaGRWQNALEKYTAALEIDPsnkgTNSKILQNRALCYTKLKQFDEAIADCERAISLDPSYLKARKTK 601
Cdd:COG3914  155 ALRRL----------GRLEEAIAALRRALELDP----DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220

                        250       260       270
                 ....*....|....*....|....*....|.
gi 336469706 602 ANALGLAERWEDCVREWKALQELEPEDRTIA 632
Cdd:COG3914  221 LFALRQACDWEVYDRFEELLAALARGPSELS 251
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 647-711 3.54e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 93.13  E-value: 3.54e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 336469706 647 RKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14285   2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYD 66
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 648-711 7.84e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 92.36  E-value: 7.84e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14286   4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYD 67
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
283-414 4.47e-19

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 86.89  E-value: 4.47e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 283 TPVQSPAEQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKI 362
Cdd:COG4785   64 DRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 336469706 363 LLRLARIYTSLGRPEEAIATFGR-IQPPPSAKDMAPARDMLNYIQAAQKALQE 414
Cdd:COG4785  144 YLNRGIALYYLGRYELAIADLEKaLELDPNDPERALWLYLAERKLDPEKALAL 196
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 648-723 5.11e-19

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 90.27  E-value: 5.11e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNpGDASaeaRFKDISEAYETLSDSQKRARYD--------SGDDLVDP 719
Cdd:PTZ00037  28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG-GDPE---KFKEISRAYEVLSDPEKRKIYDeygeegleGGEQPADA 103


                 ....
gi 336469706 720 SDMF 723
Cdd:PTZ00037 104 SDLF 107
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 332-662 6.52e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.48  E-value: 6.52e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 332 RAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATFgriqpppsakdmapardmlnyiqaaqka 411
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIH---------------------------- 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 412 lqegtaasmvlhpldmaerllgigasrprkwvlmrgeallrlgdinslgeaQNiamsLLRNNSQDPEALVIRGRALYASG 491
Cdd:COG2956   66 ---------------------------------------------------QK----LLERDPDRAEALLELAQDYLKAG 90

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 492 ENDKAIQHFRKALSCDPDFKDAIKWL-RIVQRLdrmkgegndeykaGRWQNALEKYTAALEIDPSNkgtnSKILQNRALC 570
Cdd:COG2956   91 LLDRAEELLEKLLELDPDDAEALRLLaEIYEQE-------------GDWEKAIEVLERLLKLGPEN----AHAYCELAEL 153

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 571 YTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKALQELEPEDRTIAQEVKRAELELKKSQR--K 648
Cdd:COG2956  154 YLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEalE 233

                        330
                 ....*....|....
gi 336469706 649 DYYKILGIDKNADE 662
Cdd:COG2956  234 LLRKALELDPSDDL 247
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 647-711 7.46e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 86.22  E-value: 7.46e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 336469706 647 RKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDaSAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14287   3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP-DAEDKFKEVKEAYDTLSDPQKKAHYD 66
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 406-633 9.93e-18

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 87.74  E-value: 9.93e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 406 QAAQKALQEGTAASMVLHPLDMAERLLGIGASRPRKWVLMRGEALLRLGDINSLGEAQNIAMSLLRNNSQDPEALVIR-- 483
Cdd:COG3914    2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAll 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 484 ---GRALYASGENDKAIQHFRKALSCDPDFKDAikWLRIvqrldrmkgeGNDEYKAGRWQNALEKYTAALEIDPSNkgtn 560
Cdd:COG3914   82 elaALLLQALGRYEEALALYRRALALNPDNAEA--LFNL----------GNLLLALGRLEEALAALRRALALNPDF---- 145

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 336469706 561 SKILQNRALCYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKALQELEPEDRTIAQ 633
Cdd:COG3914  146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS 218
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
645-711 1.33e-17

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 78.22  E-value: 1.33e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 336469706 645 SQRKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGD-ASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:COG2214    2 PDLKDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGGELkALAEELFQRLNEAYEVLSDPERRAEYD 69
termin_org_DnaJ TIGR03835
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ ...
 647-723 1.39e-17

terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274808 [Multi-domain]  Cd Length: 871  Bit Score: 87.56  E-value: 1.39e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 336469706  647 RKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNpGDASAEARFKDISEAYETLSDSQKRARYDS-GDDLVDPSDMF 723
Cdd:TIGR03835   1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRN-KAPDAASIFAEINEANDVLSNPKKRANYDKyGHDGVDREDDF 77
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 292-411 1.49e-17

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 86.97  E-value: 1.49e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 292 AEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYT 371
Cdd:COG3914  112 AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQ 191

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 336469706 372 SLGRPEEAIATFGRiqpppsAKDMAPARDML--NYIQAAQKA 411
Cdd:COG3914  192 DLGRLEEAIAAYRR------ALELDPDNADAhsNLLFALRQA 227
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 649-711 1.68e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 84.94  E-value: 1.68e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 336469706 649 DYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPgDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14292   3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYD 64
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 290-408 1.78e-17

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 79.28  E-value: 1.78e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 290 EQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARI 369
Cdd:COG4235   15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 336469706 370 YTSLGRPEEAIATFGRiqpppsAKDMAPARDMLNYIQAA 408
Cdd:COG4235   95 AFQQGDYAEAIAAWQK------LLALLPADAPARLLEAS 127
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 290-654 2.15e-17

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 86.58  E-value: 2.15e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  290 EQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATYlGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARI 369
Cdd:TIGR00990 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYY-SNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  370 YTSLGRPEEAIATFGRIQPPPSAKD--MAPARDMLNYIQAAQKALQEGTAASMVLHPLDMAERLLGIGASRPRKWVLMR- 446
Cdd:TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNeqSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDs 283

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  447 -------GEALLRLG-----------------------DINSLGEAQNIAMSL--------------------------- 469
Cdd:TIGR00990 284 neldeetGNGQLQLGlkspeskadesyeeaarafekalDLGKLGEKEAIALNLrgtfkclkgkhlealadlsksieldpr 363

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  470 ----------------------------LRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLRIVQ 521
Cdd:TIGR00990 364 vtqsyikrasmnlelgdpdkaeedfdkaLKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  522 --------------RLDRMKGEGNDEYK--------AGRWQNALEKYTAALEIDPSNKGTNSKI--LQNRALCYTKLKQ- 576
Cdd:TIGR00990 444 ykegsiassmatfrRCKKNFPEAPDVYNyygellldQNKFDEAIEKFDTAIELEKETKPMYMNVlpLINKALALFQWKQd 523

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 336469706  577 FDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKALQELEPEDRTIAQEVKRAELELKKSQRKDYYKIL 654
Cdd:TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQEDYPVL 601
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 648-712 2.82e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 83.06  E-value: 2.82e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPgDASAEARFKDISEAYETLSDSQKRARYDS 712
Cdd:PRK14299   4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDT 67
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 290-385 5.19e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 78.31  E-value: 5.19e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 290 EQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARI 369
Cdd:COG4783   36 DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115

                         90
                 ....*....|....*.
gi 336469706 370 YTSLGRPEEAIATFGR 385
Cdd:COG4783  116 YRALGRPDEAIAALEK 131
PRK10266 PRK10266
curved DNA-binding protein;
648-711 1.44e-16

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 81.41  E-value: 1.44e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPgDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK10266   4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYD 66
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 474-628 3.08e-16

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 76.00  E-value: 3.08e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 474 SQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLrivqrldrmkgeGNDEYKAGRWQNALEKYTAALEID 553
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALL------------GEILLQLGDLDEAIVLLHEALELD 68

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 336469706 554 PSNkgtnSKILQNRALCYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKALQELEPED 628
Cdd:COG4783   69 PDE----PEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 444-594 5.73e-16

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 75.23  E-value: 5.73e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 444 LMRGEALLRLGDINslgEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLrivqrl 523
Cdd:COG4783    8 YALAQALLLAGDYD---EAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL------ 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 336469706 524 drmkgeGNDEYKAGRWQNALEKYTAALEIDPSnkgtNSKILQNRALCYTKLKQFDEAIADCERAISLDPSY 594
Cdd:COG4783   79 ------GLALLKAGDYDEALALLEKALKLDPE----HPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 302-385 7.90e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 75.38  E-value: 7.90e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 302 FFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIA 381
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143


                 ....
gi 336469706 382 TFGR 385
Cdd:COG5010  144 ALQR 147
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 289-557 9.96e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 81.19  E-value: 9.96e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 289 AEQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLAR 368
Cdd:COG3914   75 LLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGE 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 369 IYTSLGRPEEAIATFgriqpppsakdmapardmlnyiqaaQKALQegtaasmvLHPldmaerllgigasrprkwvlmrge 448
Cdd:COG3914  155 ALRRLGRLEEAIAAL-------------------------RRALE--------LDP------------------------ 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 449 allrlgdinslgeaqniamsllrnnsQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAI-KWLRIVqrldrmk 527
Cdd:COG3914  178 --------------------------DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHsNLLFAL------- 224

                        250       260       270
                 ....*....|....*....|....*....|..
gi 336469706 528 gegndeYKAGRWQNA--LEKYTAALEIDPSNK 557
Cdd:COG3914  225 ------RQACDWEVYdrFEELLAALARGPSEL 250
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
466-674 1.20e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 76.88  E-value: 1.20e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 466 AMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLRIVQRLDRMKGE--------GNDEYKAG 537
Cdd:COG4785    8 LLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDlaqlyyerGVAYDSLG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 538 RWQNALEKYTAALEIDPsnkgTNSKILQNRALCYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVRE 617
Cdd:COG4785   88 DYDLAIADFDQALELDP----DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIAD 163

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 336469706 618 WKALQELEPEDRTIAQEVKRAELELKKSQRKDYYK--ILGIDKNADETQIKKAYRKLAI 674
Cdd:COG4785  164 LEKALELDPNDPERALWLYLAERKLDPEKALALLLedWATAYLLQGDTEEARELFKLAL 222
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 495-638 2.30e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 73.12  E-value: 2.30e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 495 KAIQHFRKALSCDPDfkDAIKWLRIvqrldrmkgeGNDEYKAGRWQNALEKYTAALEIDPsnkgTNSKILQNRALCYTKL 574
Cdd:COG4235    1 EAIARLRQALAANPN--DAEGWLLL----------GRAYLRLGRYDEALAAYEKALRLDP----DNADALLDLAEALLAA 64

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 336469706 575 KQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKALQELEPED---RTIAQEVKRA 638
Cdd:COG4235   65 GDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADapaRLLEASIAEA 131
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
302-385 3.30e-15

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 71.74  E-value: 3.30e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 302 FFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEdCTRAAELDPNNPKILLRLARIYTSLGRPEEAIA 381
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                 ....
gi 336469706 382 TFGR 385
Cdd:COG3063   81 YLER 84
PRK14288 PRK14288
molecular chaperone DnaJ;
650-711 5.59e-15

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 77.42  E-value: 5.59e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 336469706 650 YYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14288   5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYD 66
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 648-711 7.23e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 76.98  E-value: 7.23e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDkNPGDASAEARFKDISEAYETLSDSQKRARYD 711
Cdd:PRK14300   3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRAAYD 65
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 289-414 7.73e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 72.15  E-value: 7.73e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 289 AEQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLAR 368
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 336469706 369 IYTSLGRPEEAIATFGR---IQP--PPSAKDMAPARDMLNYIQAAQKALQE 414
Cdd:COG4783   81 ALLKAGDYDEALALLEKalkLDPehPEAYLRLARAYRALGRPDEAIAALEK 131
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 304-593 1.30e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.20  E-value: 1.30e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  304 KAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATF 383
Cdd:TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  384 GRIQpppSAKDMAPA-RDMLNYIQAAQKALQEGTAASMVLHPLDmaerllgigasrPRKWVLMR-GEALLRLGDINslgE 461
Cdd:TIGR02917 693 KSLQ---KQHPKAALgFELEGDLYLRQKDYPAAIQAYRKALKRA------------PSSQNAIKlHRALLASGNTA---E 754

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  462 AQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLRIVQRldrmkgegndEYKAGRwqn 541
Cdd:TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYL----------ELKDPR--- 821

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 336469706  542 ALEKYTAALEIDPSnkgtNSKILQNRALCYTKLKQFDEAIADCERAISLDPS 593
Cdd:TIGR02917 822 ALEYAERALKLAPN----IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 646-723 1.30e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 76.14  E-value: 1.30e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 336469706 646 QRKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPgDASAEARFKDISEAYETLSDSQKRARYDS-GDDLVDPSDMF 723
Cdd:PRK14296   2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQfGHAAFDGSSGF 79
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 303-710 3.64e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 76.66  E-value: 3.64e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  303 FKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIAT 382
Cdd:TIGR02917 306 YQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEY 385

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  383 F---GRIQPPPSAKDMAPA--RDMLNYIQAAQKALQegTAASMVLHPLDmAERLLGIGAsrprkwvlmrgealLRLGDIN 457
Cdd:TIGR02917 386 LakaTELDPENAAARTQLGisKLSQGDPSEAIADLE--TAAQLDPELGR-ADLLLILSY--------------LRSGQFD 448

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  458 slgEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLrivQRLDrmkgegndeYKAG 537
Cdd:TIGR02917 449 ---KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANL---ARID---------IQEG 513

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  538 RWQNALEKYTAALEIDPSNKGTnskILQNRALcYTKLKQFDEAIADCERAISLDPsylkarKTKANALGLAERWEDCVRE 617
Cdd:TIGR02917 514 NPDDAIQRFEKVLTIDPKNLRA---ILALAGL-YLRTGNEEEAVAWLEKAAELNP------QEIEPALALAQYYLGKGQL 583

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  618 WKALqelepedrTIAQEVkraeLELKKSQrKDYYKILGID--KNADETQIKKAYRKLAIVhhpdkNPGDASAEARfkdIS 695
Cdd:TIGR02917 584 KKAL--------AILNEA----ADAAPDS-PEAWLMLGRAqlAAGDLNKAVSSFKKLLAL-----QPDSALALLL---LA 642

                         410
                  ....*....|....*
gi 336469706  696 EAYETLSDSQKRARY 710
Cdd:TIGR02917 643 DAYAVMKNYAKAITS 657
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 290-598 1.49e-13

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 74.73  E-value: 1.49e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  290 EQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQP---ESATYLGNraaAYMSAGKYKDALEDCTRAAELDPNNPKILLRL 366
Cdd:TIGR02917  20 QSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPndaEARFLLGK---IYLALGDYAAAEKELRKALSLGYPKNQVLPLL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  367 ARIYTSLGRPEEAIATFGriqpppsAKDMAPARDmlnyiQAAQKALQegTAASMVLHPLDMAERLLGIGAS-RPRKWVLM 445
Cdd:TIGR02917  97 ARAYLLQGKFQQVLDELP-------GKTLLDDEG-----AAELLALR--GLAYLGLGQLELAQKSYEQALAiDPRSLYAK 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  446 RGEALLRLGDiNSLGEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFkDAIKWLRIVQRLdr 525
Cdd:TIGR02917 163 LGLAQLALAE-NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-IAVLLALATILI-- 238

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 336469706  526 mkgegndeyKAGRWQNALEKYTAALEIDPSNKGTNskilQNRALCYTKLKQFDEAIADCERAISLDPSYLKAR 598
Cdd:TIGR02917 239 ---------EAGEFEEAEKHADALLKKAPNSPLAH----YLKALVDFQKKNYEDARETLQDALKSAPEYLPAL 298
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 470-592 1.34e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 65.41  E-value: 1.34e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 470 LRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAikWLRIVQRLdrmkgegndeYKAGRWQNALEKYTAA 549
Cdd:COG4235   10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADA--LLDLAEAL----------LAAGDTEEAEELLERA 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 336469706 550 LEIDPsnkgTNSKILQNRALCYTKLKQFDEAIADCERAISLDP 592
Cdd:COG4235   78 LALDP----DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 310-386 4.90e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 63.87  E-value: 4.90e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 336469706 310 QAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATFGRI 386
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 344-525 7.42e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 63.10  E-value: 7.42e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 344 DALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATFgriqpppsakdmapardmlnyiqaaQKALQegtaasmvLH 423
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAY-------------------------EKALR--------LD 47

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 424 PlDMAERLLGigasrprkwvlmRGEALLRLGDinsLGEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKA 503
Cdd:COG4235   48 P-DNADALLD------------LAEALLAAGD---TEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111

                        170       180
                 ....*....|....*....|..
gi 336469706 504 LSCDPDFKDaikWLRIVQRLDR 525
Cdd:COG4235  112 LALLPADAP---ARLLEASIAE 130
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
486-596 1.05e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 61.72  E-value: 1.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 486 ALYASGENDKAIQHFRKALSCDPDFKDAIKWLrivqrldrmkgeGNDEYKAGRWQNALEkYTAALEIDPSNkgtnSKILQ 565
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNL------------GLLLLEQGRYDEAIA-LEKALKLDPNN----AEALL 63

                         90       100       110
                 ....*....|....*....|....*....|.
gi 336469706 566 NRALCYTKLKQFDEAIADCERAISLDPSYLK 596
Cdd:COG3063   64 NLAELLLELGDYDEALAYLERALELDPSALR 94
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 302-628 1.11e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 68.57  E-value: 1.11e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  302 FFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIA 381
Cdd:TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  382 TFGRiqppPSAKDMAPARDMLNYIQAAQKALQEGTAasmvlhpLDMAERLLGIGASRPRKWvLMRGEALLRLGDINSLGE 461
Cdd:TIGR02917 555 WLEK----AAELNPQEIEPALALAQYYLGKGQLKKA-------LAILNEAADAAPDSPEAW-LMLGRAQLAAGDLNKAVS 622

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  462 AQNiamSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWL--------------RIVQRLDRMK 527
Cdd:TIGR02917 623 SFK---KLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLaqlllaakrtesakKIAKSLQKQH 699

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  528 G--------EGNDEYKAGRWQNALEKYTAALEIDPSNKgtnSKILQNRALCYTKLKQfdEAIADCERAISLDPSYLKARK 599
Cdd:TIGR02917 700 PkaalgfelEGDLYLRQKDYPAAIQAYRKALKRAPSSQ---NAIKLHRALLASGNTA--EAVKTLEAWLKTHPNDAVLRT 774

                         330       340
                  ....*....|....*....|....*....
gi 336469706  600 TKANALGLAERWEDCVREWKALQELEPED 628
Cdd:TIGR02917 775 ALAELYLAQKDYDKAIKHYQTVVKKAPDN 803
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 305-708 1.30e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 68.19  E-value: 1.30e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  305 AKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEA----- 379
Cdd:TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAekhad 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  380 ----------IATFGRIQPPPSAKDMAPARDmlnYIQAAQK-------ALQEGTAASMVLHPLDMAERLLGIGASRPRKW 442
Cdd:TIGR02917 252 allkkapnspLAHYLKALVDFQKKNYEDARE---TLQDALKsapeylpALLLAGASEYQLGNLEQAYQYLNQILKYAPNS 328

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  443 VLMR---GEALLRLGDInslGEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPdfKDAIKWLRI 519
Cdd:TIGR02917 329 HQARrllASIQLRLGRV---DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP--ENAAARTQL 403

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  520 VQrLDRMKGEGndeykagrwQNALEKYTAALEIDPsnKGTNSKILQnrALCYTKLKQFDEAIADCER------------- 586
Cdd:TIGR02917 404 GI-SKLSQGDP---------SEAIADLETAAQLDP--ELGRADLLL--ILSYLRSGQFDKALAAAKKlekkqpdnaslhn 469

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  587 ---------------------AISLDPSYLKARKTKANALGLAERWEDCVREWKALQELEPEDrtIAQEVKRAELELKKS 645
Cdd:TIGR02917 470 llgaiylgkgdlakareafekALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN--LRAILALAGLYLRTG 547

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 336469706  646 QRKDYYKILGIDKNADETQIKKayRKLAIVHH-PDKNPGDA-----SAEARFKDISEAYETLSDSQKRA 708
Cdd:TIGR02917 548 NEEEAVAWLEKAAELNPQEIEP--ALALAQYYlGKGQLKKAlailnEAADAAPDSPEAWLMLGRAQLAA 614
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
646-705 1.92e-11

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 60.20  E-value: 1.92e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 336469706 646 QRKDYYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDASAEA------RFKDISEAYETLSDSQ 705
Cdd:COG1076    2 QLDDAFELLGLPPDADDAELKRAYRKLQREHHPDRLAAGLPEEEqrlalqKAAAINEAYETLKDPR 67
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 521-644 3.87e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.36  E-value: 3.87e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 521 QRLDRMKGEGNDEYKAGRWQNALEKYTAALEIDPsnkgTNSKILQNRALCYTKLKQFDEAIADCERAISLDPSYLKARKT 600
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDP----DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 336469706 601 KANALGLAERWEDCVREWKALQELEPEDRTIAQEVKRAELELKK 644
Cdd:COG4783   78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR 121
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 301-386 4.80e-11

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 60.39  E-value: 4.80e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 301 KFFKAKDYNQAIAHYTKAIVLQPESATY---LGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKI---LLRLARIYTSLG 374
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELG 81

                         90
                 ....*....|..
gi 336469706 375 RPEEAIATFGRI 386
Cdd:COG1729   82 DYDKARATLEEL 93
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 357-556 1.28e-10

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 65.10  E-value: 1.28e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  357 PNNPKILLRLARIYTSLGRPEEAIATFGRIQPPPSAKDMAPARDMlNYIQ------AAQKALQ-------EGTAASMVLH 423
Cdd:PRK11447  178 PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWY-GQIKdmpvsdASVAALQkylqvfsDGDSVAAARS 256

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  424 PLDMAERLLGIGASRPRkwvlMRGEALLRLGdinSLGEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKA 503
Cdd:PRK11447  257 QLAEQQKQLADPAFRAR----AQGLAAVDSG---QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKA 329

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 336469706  504 LSCDPDFKDAIKW--LRIVQRLDRMKGEGNDEYKAGRWQNALEKYTAALEIDPSN 556
Cdd:PRK11447  330 LALDPHSSNRDKWesLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD 384
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 475-626 2.43e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.59  E-value: 2.43e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 475 QDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLRIVQRLDRMKGEGNDEYKAGRWQNALEKYTAALEIDP 554
Cdd:COG5010    6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 336469706 555 snkgTNSKILQNRALCYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKALQELEP 626
Cdd:COG5010   86 ----NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 444-556 4.16e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.09  E-value: 4.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 444 LMRGEALLRLGDinsLGEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLrivqrl 523
Cdd:COG4235   21 LLLGRAYLRLGR---YDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL------ 91

                         90       100       110
                 ....*....|....*....|....*....|...
gi 336469706 524 drmkgeGNDEYKAGRWQNALEKYTAALEIDPSN 556
Cdd:COG4235   92 ------GLAAFQQGDYAEAIAAWQKLLALLPAD 118
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 302-633 5.37e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 63.18  E-value: 5.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  302 FFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIA 381
Cdd:TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  382 TFGRIqpppSAKDMAPARDMLNYIQAAQKALQEGTAASMV-----LHPLDMAERLLgigasrprkwvlmRGEALLRLGDi 456
Cdd:TIGR02917 521 RFEKV----LTIDPKNLRAILALAGLYLRTGNEEEAVAWLekaaeLNPQEIEPALA-------------LAQYYLGKGQ- 582

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  457 nsLGEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLRIVQRldRMKgegndEYKA 536
Cdd:TIGR02917 583 --LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYA--VMK-----NYAK 653

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  537 grwqnALEKYTAALEIDPSNkgTNSKILQnrALCYTKLKQFDEAIadcerAISldpSYLKARKTKAnALGLA-------- 608
Cdd:TIGR02917 654 -----AITSLKRALELKPDN--TEAQIGL--AQLLLAAKRTESAK-----KIA---KSLQKQHPKA-ALGFElegdlylr 715

                         330       340
                  ....*....|....*....|....*.
gi 336469706  609 -ERWEDCVREWKALQELEPEDRTIAQ 633
Cdd:TIGR02917 716 qKDYPAAIQAYRKALKRAPSSQNAIK 741
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 641-718 8.30e-10

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 61.59  E-value: 8.30e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 641 ELKKSQRKDYYKILGIDK---NADETQIKKAYRKLAIVHHPDKNPGDASAEAR--FKDISEAYETLSDSQKRARYDSGDD 715
Cdd:COG5269   36 DFKNWKKVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDefFKLIQKAREVLGDRKLRLQYDSNDF 115


                 ...
gi 336469706 716 LVD 718
Cdd:COG5269  116 DAD 118
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 396-554 3.81e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 56.12  E-value: 3.81e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 396 APARDMLNYIQAAQKALQEGTAASMVLHPLDMAERLLGIGASRPRKWVLMRGEALLRLGDinsLGEAQNIAMSLLRNNSQ 475
Cdd:COG5010   10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGD---FEESLALLEQALQLDPN 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 336469706 476 DPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLRIVQrldrmkgegndeYKAGRWQNALEKYTAALEIDP 554
Cdd:COG5010   87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALL------------LSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 299-628 6.12e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 59.71  E-value: 6.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  299 GNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEE 378
Cdd:TIGR02917 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDK 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  379 AIATF--GRIQPPPSA-------------KDMAPARdmlNYIQAAQKALQEGTAASMVLHPLDMAERLLGIGASRPRKWV 443
Cdd:TIGR02917 450 ALAAAkkLEKKQPDNAslhnllgaiylgkGDLAKAR---EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  444 LMRGE---ALLRLGDI----NSLGEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKW 516
Cdd:TIGR02917 527 TIDPKnlrAILALAGLylrtGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM 606

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  517 LrivqrldrmkgeGNDEYKAGRWQNALEKYTAALEIDPsNKGTNSKILqnrALCYTKLKQFDEAIADCERAISLDPSYLK 596
Cdd:TIGR02917 607 L------------GRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLL---ADAYAVMKNYAKAITSLKRALELKPDNTE 670

                         330       340       350
                  ....*....|....*....|....*....|..
gi 336469706  597 ARKTKANALGLAERWEDCVREWKALQELEPED 628
Cdd:TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA 702
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 307-551 1.31e-08

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 57.23  E-value: 1.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 307 DYNQAIAHYTKAIVLQPES--ATYLGnRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATFG 384
Cdd:COG3071   65 DYERRDEYLAQALELAPEAelAVLLT-RAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLP 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 385 RIQpppSAKDMAPARDMLNYIQAAQKALQEGTAASMVLHP----------------LDMAERLLGIGASRP-RKWVLM-- 445
Cdd:COG3071  144 ALR---KHKALSAEEAQALERRAYLGLLRQAARDAEALKAlwkalpraerrdpelaAAYARALIALGDHDEaERLLREal 220

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 446 ----RGEALLRLGDINSLGEAQNIAM--SLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDaikWLRI 519
Cdd:COG3071  221 krqwDPRLVRLYGRLQGGDPAKQLKRaeKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEA---YAEL 297

                        250       260       270
                 ....*....|....*....|....*....|..
gi 336469706 520 VQRLDRMkgegndeykaGRWQNALEKYTAALE 551
Cdd:COG3071  298 ARLLEQL----------GDPEEAAEHYRKALA 319
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 290-504 1.41e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 58.56  E-value: 1.41e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  290 EQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATyLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARI 369
Cdd:TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQN-AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAEL 779

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  370 YTSLGRPEEAIATFGRIQppPSAKDMAPARDMLNYIQAAQKALQegtaasmvlhPLDMAERLLGIGASRPrKWVLMRGEA 449
Cdd:TIGR02917 780 YLAQKDYDKAIKHYQTVV--KKAPDNAVVLNNLAWLYLELKDPR----------ALEYAERALKLAPNIP-AILDTLGWL 846

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 336469706  450 LLRLGDINSlgeaqniAMSLLRNNS-QDPEALVIR---GRALYASGENDKAIQHFRKAL 504
Cdd:TIGR02917 847 LVEKGEADR-------ALPLLRKAVnIAPEAAAIRyhlALALLATGRKAEARKELDKLL 898
djlA PRK09430
co-chaperone DjlA;
648-680 1.91e-08

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 56.36  E-value: 1.91e-08
                         10        20        30
                 ....*....|....*....|....*....|...
gi 336469706 648 KDYYKILGIDKNADETQIKKAYRKLAIVHHPDK 680
Cdd:PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232
TPR_1 pfam00515
Tetratricopeptide repeat;
561-594 1.98e-08

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 50.50  E-value: 1.98e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 336469706  561 SKILQNRALCYTKLKQFDEAIADCERAISLDPSY 594
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 466-625 2.36e-08

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 55.08  E-value: 2.36e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 466 AMSLL----RNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWLRIVqrLDRMKgegndeykagRWQN 541
Cdd:NF040959  56 AVRYLeqvaRIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVA--LLKIK----------DYEK 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 542 ALEKYTAALEIDPSNKGTNSKIlqnrALCYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKAL 621
Cdd:NF040959 124 AVEDLEEALEEKPDNFNLNYRL----GLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFKKA 199


                 ....
gi 336469706 622 QELE 625
Cdd:NF040959 200 MELE 203
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 304-425 3.23e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.43  E-value: 3.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 304 KAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATF 383
Cdd:COG5010   32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYY 111

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 336469706 384 GR---IQP--PPSAKDMAPARDMLNYIQAAQKALQEgtaaSMVLHPL 425
Cdd:COG5010  112 EKalaLSPdnPNAYSNLAALLLSLGQDDEAKAALQR----ALGTSPL 154
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 331-385 3.51e-08

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 55.71  E-value: 3.51e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 336469706 331 NRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATFGR 385
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLR 59
TPR_19 pfam14559
Tetratricopeptide repeat;
339-388 5.20e-08

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 50.28  E-value: 5.20e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 336469706  339 AGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATFGRIQP 388
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPA 50
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 542-644 5.49e-08

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 55.56  E-value: 5.49e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 542 ALEKYTAALEIDPSNKGtnskILQNRALCYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKAL 621
Cdd:PLN03088  21 AVDLYTQAIDLDPNNAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKG 96

                         90       100
                 ....*....|....*....|...
gi 336469706 622 QELEPEDRTIAQEVKRAELELKK 644
Cdd:PLN03088  97 ASLAPGDSRFTKLIKECDEKIAE 119
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 622-711 5.56e-08

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 56.72  E-value: 5.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  622 QELEPEDRTIAQEVKRAELELKKSQRKD---------YYKILGIDKNADETQIKKAYRKLAIVHHPDKNPGDaSAEARFK 692
Cdd:PTZ00341  538 EHVEEEISTAEEHIEEPASDVQQDSEAAptieipdtlFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFK 616

                          90
                  ....*....|....*....
gi 336469706  693 DISEAYETLSDSQKRARYD 711
Cdd:PTZ00341  617 KINEAYQILGDIDKKKMYN 635
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 303-359 7.73e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.12  E-value: 7.73e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 336469706 303 FKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNN 359
Cdd:COG4783   83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 288-385 1.09e-07

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 51.53  E-value: 1.09e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  288 PAEQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLA 367
Cdd:TIGR02552  13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92

                          90
                  ....*....|....*...
gi 336469706  368 RIYTSLGRPEEAIATFGR 385
Cdd:TIGR02552  93 ECLLALGEPESALKALDL 110
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
335-381 1.19e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.17  E-value: 1.19e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 336469706 335 AYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIA 381
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA 47
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 561-594 2.12e-07

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 47.44  E-value: 2.12e-07
                           10        20        30
                   ....*....|....*....|....*....|....
gi 336469706   561 SKILQNRALCYTKLKQFDEAIADCERAISLDPSY 594
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
304-385 2.51e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 52.22  E-value: 2.51e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 304 KAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATF 383
Cdd:COG4785   51 AALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDF 130


                 ..
gi 336469706 384 GR 385
Cdd:COG4785  131 DR 132
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 475-610 3.84e-07

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 51.95  E-value: 3.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  475 QDPE-ALVIRGRALYAS--GENDKAIQHFRKALSCDPDFKDAikwlrivqrldrMKGEGNDEYKAGRWQNALEKYTAALE 551
Cdd:TIGR02521  60 HDPDdYLAYLALALYYQqlGELEKAEDSFRRALTLNPNNGDV------------LNNYGTFLCQQGKYEQAMQQFEQAIE 127

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 336469706  552 iDPsNKGTNSKILQNRALCYTKLKQFDEAIADCERAISLDPSYLKARktkanaLGLAER 610
Cdd:TIGR02521 128 -DP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESL------LELAEL 178
TPR_1 pfam00515
Tetratricopeptide repeat;
326-359 3.93e-07

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 46.65  E-value: 3.93e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 336469706  326 ATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNN 359
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 326-359 5.50e-07

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 46.29  E-value: 5.50e-07
                           10        20        30
                   ....*....|....*....|....*....|....
gi 336469706   326 ATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNN 359
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 303-383 7.35e-07

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 52.10  E-value: 7.35e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 303 FKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIAT 382
Cdd:PLN03088  13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92


                 .
gi 336469706 383 F 383
Cdd:PLN03088  93 L 93
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
449-555 1.44e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 1.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 449 ALLRLGDinsLGEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQhFRKALSCDPDFKDAIKWLrivqrldrmkg 528
Cdd:COG3063    1 LYLKLGD---LEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNL----------- 65

                         90       100
                 ....*....|....*....|....*..
gi 336469706 529 eGNDEYKAGRWQNALEKYTAALEIDPS 555
Cdd:COG3063   66 -AELLLELGDYDEALAYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 302-369 2.32e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.69  E-value: 2.32e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 336469706 302 FFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARI 369
Cdd:COG4235   61 LLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
290-358 2.37e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.32  E-value: 2.37e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 336469706 290 EQAEGFKNEGNKFFKAKDYNQAIAhYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPN 358
Cdd:COG3063   24 DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 485-602 8.29e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 45.37  E-value: 8.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 485 RALYASGENDKAIQHFRKALSCDPDFK---DAIKWLrivqrldrmkgeGNDEYKAGRWQNALEKYTAALEIDPSNKgTNS 561
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWL------------GEAYYALGDYDEAAEAFEKLLKRYPDSP-KAP 67

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 336469706 562 KILQNRALCYTKLKQFDEAIADCERAISLDPSYLKARKTKA 602
Cdd:COG1729   68 DALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARA 108
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 290-357 9.24e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.49  E-value: 9.24e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 336469706 290 EQAEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDP 357
Cdd:COG5010   86 NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TPR_12 pfam13424
Tetratricopeptide repeat;
324-383 1.08e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.92  E-value: 1.08e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 336469706  324 ESATYLGNRAAAYMSAGKYKDALEDCTRAAEL-----DPNNPKI---LLRLARIYTSLGRPEEAIATF 383
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHPLTattLLNLGRLYLELGRYEEALELL 68
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
532-625 2.39e-05

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 46.41  E-value: 2.39e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 532 DEY-KAGRWQNALEKYTAALEidpSNKGTNSKILQNRALCYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLA-- 608
Cdd:COG4700   97 DALlELGRYDEAIELYEEALT---GIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKSSDAHLLYARALEal 173

                         90
                 ....*....|....*..
gi 336469706 609 ERWEdcvrewKALQELE 625
Cdd:COG4700  174 GDLE------AAEAELE 184
TPR_11 pfam13414
TPR repeat;
299-340 2.79e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.69  E-value: 2.79e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 336469706  299 GNKFFKAKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAG 340
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 292-324 3.62e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 3.62e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 336469706   292 AEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPE 324
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_1 pfam00515
Tetratricopeptide repeat;
292-324 4.19e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.87  E-value: 4.19e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 336469706  292 AEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPE 324
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 477-509 5.61e-05

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 40.58  E-value: 5.61e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 336469706  477 PEALVIRGRALYASGENDKAIQHFRKALSCDPD 509
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_17 pfam13431
Tetratricopeptide repeat;
349-381 6.28e-05

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 40.60  E-value: 6.28e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 336469706  349 CTRAAELDPNNPKILLRLARIYTSLGRPEEAIA 381
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 562-592 7.17e-05

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 40.20  E-value: 7.17e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 336469706  562 KILQNRALCYTKLKQFDEAIADCERAISLDP 592
Cdd:pfam07719   2 EALYNLGLAYYKLGDYEEALEAYEKALELDP 32
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 297-387 7.92e-05

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 45.02  E-value: 7.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  297 NEGNKFFKAKDYNQAIAHYTKAIVLQ--PESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLG 374
Cdd:TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183

                          90
                  ....*....|...
gi 336469706  375 RPEEAIATFGRIQ 387
Cdd:TIGR02521 184 QYKDARAYLERYQ 196
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 326-358 9.82e-05

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 39.81  E-value: 9.82e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 336469706  326 ATYLGNRAAAYMSAGKYKDALEDCTRAAELDPN 358
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 567-644 1.07e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.41  E-value: 1.07e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 336469706 567 RALCYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKALQELEPEDRTIAQEVKRAELELKK 644
Cdd:COG5010   60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQ 137
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 329-514 1.14e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 45.84  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  329 LGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATFGRI---QPPPSAKDMAPA------- 398
Cdd:PRK11447  464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLaqqKPNDPEQVYAYGlylsgsd 543

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  399 RDmlnyiQAAQKALQEGTAASMVLHPLDMAERLlgigasrPRKWVLMRGEALLRLGDinslgEAQniAMSLLRNNSQDPE 478
Cdd:PRK11447  544 RD-----RAALAHLNTLPRAQWNSNIQELAQRL-------QSDQVLETANRLRDSGK-----EAE--AEALLRQQPPSTR 604

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 336469706  479 ALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAI 514
Cdd:PRK11447  605 IDLTLADWAQQRGDYAAARAAYQRVLTREPGNADAR 640
TPR_1 pfam00515
Tetratricopeptide repeat;
477-510 1.19e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.71  E-value: 1.19e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 336469706  477 PEALVIRGRALYASGENDKAIQHFRKALSCDPDF 510
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_8 pfam13181
Tetratricopeptide repeat;
562-593 1.33e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 39.69  E-value: 1.33e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 336469706  562 KILQNRALCYTKLKQFDEAIADCERAISLDPS 593
Cdd:pfam13181   2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 477-510 1.59e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 1.59e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 336469706   477 PEALVIRGRALYASGENDKAIQHFRKALSCDPDF 510
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PHA03102 PHA03102
Small T antigen; Reviewed
 652-721 2.13e-04

Small T antigen; Reviewed


Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 42.35  E-value: 2.13e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 336469706 652 KILGIDKNA--DETQIKKAYRKLAIVHHPDKNpGDasaEARFKDISEAYETLSDSQKRARYDSGDDLVDPSD 721
Cdd:PHA03102   9 DLLGLPRSAwgNLPLMRKAYLRKCLEFHPDKG-GD---EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE 76
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 307-386 2.60e-04

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 40.31  E-value: 2.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  307 DYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEdCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATFGRI 386
Cdd:pfam12895   4 QYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYE-LLRKAKLNGSSLGCRYLFAQCLLKLKKYDEALDALGKA 82
TPR_11 pfam13414
TPR repeat;
335-374 3.63e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.61  E-value: 3.63e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 336469706  335 AYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLG 374
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 290-359 3.98e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.39  E-value: 3.98e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 290 EQAEGFKNEGNkffkakdYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNN 359
Cdd:cd24142    5 EKAEELLDQGN-------FELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
570-660 4.10e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.15  E-value: 4.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 570 CYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKALqELEPEDRTIAQEVKRAELELKKSQ--R 647
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKAL-KLDPNNAEALLNLAELLLELGDYDeaL 79

                         90
                 ....*....|...
gi 336469706 648 KDYYKILGIDKNA 660
Cdd:COG3063   80 AYLERALELDPSA 92
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 542-593 4.39e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.00  E-value: 4.39e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 336469706 542 ALEKYTAALEIDPsnkgTNSKILQNRALCYTKLKQFDEAIADCERAISLDPS 593
Cdd:cd24142   19 ALKFLQRALELEP----NNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
TPR_19 pfam14559
Tetratricopeptide repeat;
305-369 4.82e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 39.10  E-value: 4.82e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 336469706  305 AKDYNQAIAHYTKAIVLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARI 369
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 307-375 5.14e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.58  E-value: 5.14e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 336469706 307 DYNQAIAHYTKAIVLQ--PESATY-LGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGR 375
Cdd:PRK02603  50 EYAEALENYEEALKLEedPNDRSYiLYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
333-387 9.21e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 41.79  E-value: 9.21e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 336469706 333 AAAYMSAGKYKDALEDCTRAAE-LDPNNPKILLRLARIYTSLGRPEEAIATFGRIQ 387
Cdd:COG4700   96 ADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLI 151
TPR_14 pfam13428
Tetratricopeptide repeat;
332-369 9.90e-04

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 37.40  E-value: 9.90e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 336469706  332 RAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARI 369
Cdd:pfam13428   7 LARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 33-298 9.99e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 42.75  E-value: 9.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  33 SGTSGPRSPYSHAKRSHSQSPPPPPPPPKSLRPPAQTQQHRlsPTK-PVFSS-PSGTRSPSAKKTHRSDSQPRRDHSP-- 108
Cdd:PTZ00449 528 EGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHK--PSKiPTLSKkPEFPKDPKHPKDPEEPKKPKRPRSAqr 605

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 109 PTPPPHYNLP-----PTPPSGSTSRSASARDPTkhsssssshqprsstssrssfgrhPVDPAAASDSRSRSTSFRRKKVD 183
Cdd:PTZ00449 606 PTRPKSPKLPelldiPKSPKRPESPKSPKRPPP------------------------PQRPSSPERPEGPKIIKSPKPPK 661

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 184 TDIHPLNlpPEQRKRFSDLSGFSVRNSMEFDNKENGAASAASPPPPPHKQQPQDQQAQQKPTPPA----HGSTFTVPmsN 259
Cdd:PTZ00449 662 SPKPPFD--PKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKlprdEEFPFEPI--G 737

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 336469706 260 GADAAQTNDGEVPTPPPHRSQ--PTTPVQSPAEQ--AEGFKNE 298
Cdd:PTZ00449 738 DPDAEQPDDIEFFTPPEEERTffHETPADTPLPDilAEEFKEE 780
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
299-383 1.19e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 41.41  E-value: 1.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 299 GNKFFKAKDYNQAIAHYTKAIV-LQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDP--NNPKILLRLARIYTSLGR 375
Cdd:COG4700   96 ADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPdfKSSDAHLLYARALEALGD 175


                 ....*...
gi 336469706 376 PEEAIATF 383
Cdd:COG4700  176 LEAAEAEL 183
TPR_12 pfam13424
Tetratricopeptide repeat;
530-593 1.34e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.14  E-value: 1.34e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 336469706  530 GNDEYKAGRWQNALEKYTAALEIDPSNKGTNSK----ILQNRALCYTKLKQFDEAIADCERAISLDPS 593
Cdd:pfam13424  10 AAVLRRLGRYDEALELLEKALEIARRLLGPDHPltatTLLNLGRLYLELGRYEEALELLERALALAEK 77
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 443-634 1.38e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 41.46  E-value: 1.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 443 VLMRGEALLRLGDinsLGEAQNIAMSLLRNNSQDPEALVIRGRALYASGENDKAIQHFRKALSCDPD-----F------- 510
Cdd:cd24142    3 LLEKAEELLDQGN---FELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDggyekYlylgqls 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 511 --KDAIKWLRI-VQRLdrmkgegndeykagrwQNALEKYTAALEIDPSNKG-TNSKIlqNRALC-----Y-TKLKQFDEA 580
Cdd:cd24142   80 ggEEALQYYEKgIEIL----------------EEELQALQAASAEAEEEAEeLKRKL--SSALCalaeiYmTDLCDEPDA 141

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 336469706 581 IADCE----RAISLDPSYLKARKTKANALGLAERWEDCV----REWKALQELEPEDRTIAQE 634
Cdd:cd24142  142 EQRCEelitKALELDPTNPEALQTLASLRISQQRPDEAKealrRSLELWKDLKEEDEEEAEE 203
TPR_11 pfam13414
TPR repeat;
484-513 1.59e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 36.68  E-value: 1.59e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 336469706  484 GRALYASGENDKAIQHFRKALSCDPDFKDA 513
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEA 30
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 444-509 1.80e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 37.32  E-value: 1.80e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 336469706  444 LMRGEALLRLGDinsLGEAQNIAMSLLRNNSQDP---EALVIRGRALYASGENDKAIQHFRKALSCDPD 509
Cdd:pfam13432   1 LALARAALRAGD---YDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
364-511 2.16e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 40.64  E-value: 2.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 364 LRLARIYTSLGRPEEAIAtfgriqpppsakdmapardmlNYIQAAQKALQEGTAAsmvlhpldmaerLLGigasrprkwv 443
Cdd:COG4700   93 VRLADALLELGRYDEAIE---------------------LYEEALTGIFADDPHI------------LLG---------- 129

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 444 lmRGEALLRLGDinsLGEAQNIAMSLLRNNSQ--DPEALVIRGRALYASGENDKAIQHFRKALSCDPDFK 511
Cdd:COG4700  130 --LAQALFELGR---YAEALETLEKLIAKNPDfkSSDAHLLYARALEALGDLEAAEAELEALARRYSGPE 194
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 297-360 2.46e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.93  E-value: 2.46e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 336469706  297 NEGNKFFKAKDYNQAIAHYTKAI---VLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNP 360
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 332-385 2.55e-03

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 39.21  E-value: 2.55e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 336469706   332 RAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATFGR 385
Cdd:smart01043  67 LAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRR 120
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 330-554 2.77e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 41.22  E-value: 2.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  330 GNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATFGRiqpppsAKDMAPARDmlnyiqaaq 409
Cdd:PRK11447  273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEK------ALALDPHSS--------- 337

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  410 kalQEGTAASMVlhpldmaerllgigaSRPRKWVLM-RGEALLRLGDinsLGEAQNIAMSLLRNNSQDPEALVIRGRALY 488
Cdd:PRK11447  338 ---NRDKWESLL---------------KVNRYWLLIqQGDAALKANN---LAQAERLYQQARQVDNTDSYAVLGLGDVAM 396

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706  489 ASGENDKAIQHFRKALSCDPDFKDAIKWL-RIVQR-----------------------------LDRMKGEGNDEYKAGR 538
Cdd:PRK11447  397 ARKDYAAAERYYQQALRMDPGNTNAVRGLaNLYRQqspekalafiaslsasqrrsiddierslqNDRLAQQAEALENQGK 476

                         250
                  ....*....|....*.
gi 336469706  539 WQNALEKYTAALEIDP 554
Cdd:PRK11447  477 WAQAAELQRQRLALDP 492
TPR_17 pfam13431
Tetratricopeptide repeat;
546-582 2.90e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.98  E-value: 2.90e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 336469706  546 YTAALEIDPsnkgTNSKILQNRALCYTKLKQFDEAIA 582
Cdd:pfam13431   2 YLKALELDP----NNADAYYNLAVLLLELGQSETALQ 34
TPR_19 pfam14559
Tetratricopeptide repeat;
536-603 3.06e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.79  E-value: 3.06e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 336469706  536 AGRWQNALEKYTAALEIDPsnkgTNSKILQNRALCYTKLKQFDEAIADCERAISLDPSYLKARKTKAN 603
Cdd:pfam14559   1 EGDYAEALELLEQALAEDP----DNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAK 64
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 333-422 3.55e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 39.45  E-value: 3.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 333 AAAYMSAGKYKDALEDCTRAAELDPNN---PKILLRLARIYTSLGRPEEAIATFGRIQPPPSA--------------KDM 395
Cdd:COG2976   97 AKAAVDAGDLDKAAAQLQWVLDNAKDPalkALARLRLARVLLAQKKYDEALATLDAVKPEAFAalyaelrgdillaqGDK 176

                         90       100
                 ....*....|....*....|....*..
gi 336469706 396 APARDmlNYiQAAQKALQEGTAASMVL 422
Cdd:COG2976  177 AEARA--AY-QKALAALPEDAPLRQLL 200
SirB1 COG2912
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ...
 328-402 4.62e-03

Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];


Pssm-ID: 442156 [Multi-domain]  Cd Length: 264  Bit Score: 39.81  E-value: 4.62e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 336469706 328 YLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKILLRLARIYTSLGRPEEAIATFGR-IQPPPSakdmAPARDML 402
Cdd:COG2912  181 MLRNLKAAYLREKDWERALRVVERLLLLDPDDPYEIRDRGLLYAQLGCYQAALEDLEYfLEQCPE----DPDAELI 252
TPR_11 pfam13414
TPR repeat;
530-556 4.69e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.53  E-value: 4.69e-03
                          10        20
                  ....*....|....*....|....*..
gi 336469706  530 GNDEYKAGRWQNALEKYTAALEIDPSN 556
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDN 27
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 529-594 4.91e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.16  E-value: 4.91e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 336469706  529 EGNDEYKAGRWQNALEKYTAALEIDPSNKGTNSkILQNRALCYTKLKQFDEAIADCERAISLDPSY 594
Cdd:pfam13432   3 LARAALRAGDYDDAAAALEAALARFPESPDAAA-ALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 292-324 5.42e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.19  E-value: 5.42e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 336469706  292 AEGFKNEGNKFFKAKDYNQAIAHYTKAIVLQPE 324
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 567-690 5.60e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.33  E-value: 5.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336469706 567 RALCYTKLKQFDEAIADCERAISLDPSYLKARKTKANALGLAERWEDCVREWKALQELEPEDRTIAQEVKRAELELKKSQ 646
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 336469706 647 R-KDYY-KILGIDKNADEtqikkAYRKLAIVHHPDKNPGDASAEAR 690
Cdd:COG2956   94 RaEELLeKLLELDPDDAE-----ALRLLAEIYEQEGDWEKAIEVLE 134
TPR_14 pfam13428
Tetratricopeptide repeat;
477-517 6.07e-03

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 35.48  E-value: 6.07e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 336469706  477 PEALVIRGRALYASGENDKAIQHFRKALSCDPDFKDAIKWL 517
Cdd:pfam13428   1 PEALLALARALLALGDPDEALALLERALALDPDDPEAWLAL 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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