NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|323459616|gb|EGB15481|]
View 

4Fe-4S ferredoxin iron-sulfur binding domain protein [Pseudodesulfovibrio mercurii]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PorD super family cl34138
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 3-72 1.68e-10

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


The actual alignment was detected with superfamily member COG1144:

Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 51.59  E-value: 1.68e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323459616  3 RIEVREDRCKGCLLCTTVCPVDIIVQSDRfnvsgykvaEVPEADKDKCTGCASCAQICPDVAIRVYRTPK 72
Cdd:COG1144  24 RPVVDEDKCIGCGLCWIVCPDGAIRVDDG---------KYYGIDYDYCKGCGICAEVCPVKAIEMVPEEK 84
 
Name Accession Description Interval E-value
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 3-72 1.68e-10

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 51.59  E-value: 1.68e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323459616  3 RIEVREDRCKGCLLCTTVCPVDIIVQSDRfnvsgykvaEVPEADKDKCTGCASCAQICPDVAIRVYRTPK 72
Cdd:COG1144  24 RPVVDEDKCIGCGLCWIVCPDGAIRVDDG---------KYYGIDYDYCKGCGICAEVCPVKAIEMVPEEK 84
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 1-65 8.93e-08

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 45.48  E-value: 8.93e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 323459616    1 MSRIEVREDRCKGCLLCTTVCPVDIIVQSDRFNVSGYKVAEVPEADKDKCTGCASCAQICPDVAI 65
Cdd:TIGR01971  35 LTRDPNGEEKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYEINFGRCIFCGLCEEACPTDAI 99
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 3-68 2.37e-07

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 44.70  E-value: 2.37e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 323459616   3 RIEVREDRCKGCLLCTTVCPVDIIVQSDRFNvsgykvaevPEADKDKCTGCASCAQICPDVAIRVY 68
Cdd:cd10549   72 EAEIDEEKCIGCGLCVKVCPVDAITLEDELE---------IVIDKEKCIGCGICAEVCPVNAIKLV 128
PRK13795 PRK13795
hypothetical protein; Provisional
 6-72 3.90e-07

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 45.37  E-value: 3.90e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 323459616   6 VREDRCKGCLLCTTVCPVD-IIVQSDRFNVSgykvaevpeADKDKCTGCASCAQICPDVAIRVYRTPK 72
Cdd:PRK13795 578 RRAAECVGCGVCVGACPTGaIRIEEGKRKIS---------VDEEKCIHCGKCTEVCPVVKYKDKRNGS 636
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 11-61 3.49e-05

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 37.12  E-value: 3.49e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 323459616  11 CKGCLLCTTVCPVDIIVQSDRFNVSGYKVAEVpeaDKDKCTGCASCAQICP 61
Cdd:pfam12838  1 CIGCGACVAACPVGAITLDEVGEKKGTKTVVI---DPERCVGCGACVAVCP 48
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 9-75 2.96e-04

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 37.15  E-value: 2.96e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 323459616   9 DRCKGCLLCTTVCPV-DIIVQSDRfnvsgykvaevPEAdKDKCTGCASCAQICPDVAIRVYRTPKKKE 75
Cdd:NF038196 185 DKCIGCGICAKVCPVnNIEMEDGK-----------PVW-GHNCTHCLACIHRCPKEAIEYGKKTKKKG 240
 
Name Accession Description Interval E-value
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 3-72 1.68e-10

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 51.59  E-value: 1.68e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323459616  3 RIEVREDRCKGCLLCTTVCPVDIIVQSDRfnvsgykvaEVPEADKDKCTGCASCAQICPDVAIRVYRTPK 72
Cdd:COG1144  24 RPVVDEDKCIGCGLCWIVCPDGAIRVDDG---------KYYGIDYDYCKGCGICAEVCPVKAIEMVPEEK 84
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 3-69 2.10e-10

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 51.20  E-value: 2.10e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 323459616  3 RIEVREDRCKGCLLCTTVCPVDIIVQSDRfnvsgykvaeVPEADKDKCTGCASCAQICPDVAIRVYR 69
Cdd:COG4231  16 RYVIDEDKCTGCGACVKVCPADAIEEGDG----------KAVIDPDLCIGCGSCVQVCPVDAIKLEK 72
NapH COG0348
Polyferredoxin NapH [Energy production and conversion];
3-74 4.37e-10

Polyferredoxin NapH [Energy production and conversion];


Pssm-ID: 440117 [Multi-domain]  Cd Length: 263  Bit Score: 53.14  E-value: 4.37e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 323459616   3 RIEVREDRCKGCLLCTTVCPVDIIVQSDRFNvsgykvaevpeadKDKCTGCASCAQICPDVAIRVYRTPKKK 74
Cdd:COG0348  204 RVRYDRGDCIDCGLCVKVCPMGIDIRKGEIN-------------QSECINCGRCIDACPKDAIRFSSRGEKT 262
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 3-72 4.78e-09

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 47.35  E-value: 4.78e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323459616  3 RIEVREDRCKGCLLCTTVCPVDIIVQSDrfnvsgykvaEVPEADKDKCTGCASCAQICPDVAIRVYRTPK 72
Cdd:COG2221   9 PPKIDEEKCIGCGLCVAVCPTGAISLDD----------GKLVIDEEKCIGCGACIRVCPTGAIKGEKPKK 68
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 8-77 1.11e-08

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 46.66  E-value: 1.11e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323459616  8 EDRCKGCLLCTTVCPVDIIVQSDRfnvsgyKVAEVPEADKDKCTGCASCAQICPDVAIRVYRTPKKKEGK 77
Cdd:COG1143   1 EDKCIGCGLCVRVCPVDAITIEDG------EPGKVYVIDPDKCIGCGLCVEVCPTGAISMTPFELAVEDR 64
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
5-67 1.24e-08

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 49.47  E-value: 1.24e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 323459616   5 EVREDRCKGCLLCTTVCPVDIIvqsdrfNVSGYKVAEVPEAdkdKCTGCASCAQICPDVAIRV 67
Cdd:COG1148  492 EVDPEKCTGCGRCVEVCPYGAI------SIDEKGVAEVNPA---LCKGCGTCAAACPSGAISL 545
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
1-67 2.48e-08

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 45.88  E-value: 2.48e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 323459616  1 MSRIEVREDRCKGCLLCTTVCPVDIIVQSDrfnvsgykvaEVPEADKDKCTGCASCAQICPDVAIRV 67
Cdd:COG2768   3 LGKPYVDEEKCIGCGACVKVCPVGAISIED----------GKAVIDPEKCIGCGACIEVCPVGAIKI 59
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 3-75 3.83e-08

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 45.09  E-value: 3.83e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 323459616  3 RIEVREDRCKGCLLCTTVCPVDIIvqsdRFNVSGYKVAEVpeaDKDKCTGCASCAQICPDVAIRVYRTPKKKE 75
Cdd:COG1146   2 MPVIDTDKCIGCGACVEVCPVDVL----ELDEEGKKALVI---NPEECIGCGACELVCPVGAITVEDDEPEEQ 67
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 1-65 8.93e-08

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 45.48  E-value: 8.93e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 323459616    1 MSRIEVREDRCKGCLLCTTVCPVDIIVQSDRFNVSGYKVAEVPEADKDKCTGCASCAQICPDVAI 65
Cdd:TIGR01971  35 LTRDPNGEEKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYEINFGRCIFCGLCEEACPTDAI 99
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 1-67 1.40e-07

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 43.95  E-value: 1.40e-07
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 323459616  1 MSRIEVREDRCKGCLLCTTVCPVDIIVQSDRfnvsgykvaEVPEADKDKCTGCASCAQICPDVAIRV 67
Cdd:COG1149   3 RKIPVIDEEKCIGCGLCVEVCPEGAIKLDDG---------GAPVVDPDLCTGCGACVGVCPTGAITL 60
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 3-68 2.37e-07

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 44.70  E-value: 2.37e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 323459616   3 RIEVREDRCKGCLLCTTVCPVDIIVQSDRFNvsgykvaevPEADKDKCTGCASCAQICPDVAIRVY 68
Cdd:cd10549   72 EAEIDEEKCIGCGLCVKVCPVDAITLEDELE---------IVIDKEKCIGCGICAEVCPVNAIKLV 128
PRK13795 PRK13795
hypothetical protein; Provisional
 6-72 3.90e-07

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 45.37  E-value: 3.90e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 323459616   6 VREDRCKGCLLCTTVCPVD-IIVQSDRFNVSgykvaevpeADKDKCTGCASCAQICPDVAIRVYRTPK 72
Cdd:PRK13795 578 RRAAECVGCGVCVGACPTGaIRIEEGKRKIS---------VDEEKCIHCGKCTEVCPVVKYKDKRNGS 636
oorD PRK09626
2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
 6-67 5.37e-07

2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed


Pssm-ID: 236597 [Multi-domain]  Cd Length: 103  Bit Score: 43.17  E-value: 5.37e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 323459616   6 VREDRCKGCLLCTTVCPVDII-VQSDRFNVSGyKVAEVpeADKDKCTGCASCAQICPDVAIRV 67
Cdd:PRK09626  13 VDESRCKACDICVSVCPAGVLaMRIDPHAVLG-KMIKV--VHPESCIGCRECELHCPDFAIYV 72
NapF COG1145
Ferredoxin [Energy production and conversion];
4-69 6.76e-07

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 44.71  E-value: 6.76e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 323459616   4 IEVREDRCKGCLLCTTVCPVDIIVQSDRfnvsgykvAEVPEADKDKCTGCASCAQICPDVAIRVYR 69
Cdd:COG1145  177 AVIDAEKCIGCGLCVKVCPTGAIRLKDG--------KPQIVVDPDKCIGCGACVKVCPVGAISLEP 234
RnfB COG2878
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and ...
 7-61 2.94e-06

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 442125 [Multi-domain]  Cd Length: 254  Bit Score: 42.67  E-value: 2.94e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 323459616   7 REDRCKGCLLCTTVCPVDIIVQSDRFnvsgykvaeVPEADKDKCTGCASCAQICP 61
Cdd:COG2878  135 CEYGCIGCGDCIKACPFDAIVGAAKG---------MHTVDEDKCTGCGLCVEACP 180
rnfB TIGR01944
electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in ...
 6-65 4.26e-06

electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273887 [Multi-domain]  Cd Length: 165  Bit Score: 41.71  E-value: 4.26e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 323459616    6 VREDRCKGCLLCTTVCPVDIIVQSDRFnvsgykvaeVPEADKDKCTGCASCAQICPDVAI 65
Cdd:TIGR01944 110 IDEDNCIGCTKCIQACPVDAIVGAAKA---------MHTVIADECTGCDLCVEPCPTDCI 160
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
11-75 5.39e-06

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 41.84  E-value: 5.39e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 323459616  11 CKGCLLCTTVCPVDIIVQSDrfnvsgykvaEVPEADKDKCTGCASCAQICPDVAIRVYRTPKKKE 75
Cdd:PRK07118 215 CIGCGKCVKACPAGAITMEN----------NLAVIDQEKCTSCGKCVEKCPTKAIRILNKPPKVK 269
PRK05888 PRK05888
NADH-quinone oxidoreductase subunit NuoI;
8-65 1.33e-05

NADH-quinone oxidoreductase subunit NuoI;


Pssm-ID: 235637 [Multi-domain]  Cd Length: 164  Bit Score: 40.25  E-value: 1.33e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 323459616   8 EDRCKGCLLCTTVCPVDIIVQSDRFNVSGYKVAEVPEADKDKCTGCASCAQICPDVAI 65
Cdd:PRK05888  57 EERCIACKLCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAI 114
PRK08318 PRK08318
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;
5-61 1.55e-05

NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;


Pssm-ID: 236237 [Multi-domain]  Cd Length: 420  Bit Score: 40.70  E-value: 1.55e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 323459616   5 EVREDRCKGCLLCTTVCPvDIIVQSDRFNVSGykvAEVPEADKDKCTGCASCAQICP 61
Cdd:PRK08318 338 RIDQDKCIGCGRCYIACE-DTSHQAIEWDEDG---TRTPEVIEEECVGCNLCAHVCP 390
porD PRK09624
pyruvate ferredoxin oxidoreductase subunit delta; Reviewed
 5-72 1.60e-05

pyruvate ferredoxin oxidoreductase subunit delta; Reviewed


Pssm-ID: 170017 [Multi-domain]  Cd Length: 105  Bit Score: 39.24  E-value: 1.60e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 323459616   5 EVREDRCKGCLLCTTVCPVDIIVQSDRfnvsGYkvaevPEADKDKCTGCASCAQICPDVAIRVYRTPK 72
Cdd:PRK09624  47 EFNRDKCVRCYLCYIYCPEPAIYLDEE----GY-----PVFDYDYCKGCGICANECPTKAIEMVRETK 105
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
3-67 1.68e-05

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 40.78  E-value: 1.68e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 323459616   3 RIEVREDRCKGCLLCTTVCPVDIIVQSDrfnvsgyKVAEVpeaDKDKCTGCASCAQICPDVAIRV 67
Cdd:COG4624   85 SIIRDKEKCKNCYPCVRACPVKAIKVDD-------GKAEI---DEEKCISCGQCVAVCPFGAITE 139
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
1-77 2.12e-05

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 40.18  E-value: 2.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323459616   1 MSRIEVRE-DRCKG--C-LLCTTVCPVdiivqsdrfNVSGYKVAEVPEADK------DKCTGCASCAQICPDVAIRVYRT 70
Cdd:PRK13409   1 MMRIAVVDyDRCQPkkCnYECIKYCPV---------VRTGEETIEIDEDDGkpviseELCIGCGICVKKCPFDAISIVNL 71


                 ....*..
gi 323459616  71 PKKKEGK 77
Cdd:PRK13409  72 PEELEEE 78
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 11-61 3.49e-05

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 37.12  E-value: 3.49e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 323459616  11 CKGCLLCTTVCPVDIIVQSDRFNVSGYKVAEVpeaDKDKCTGCASCAQICP 61
Cdd:pfam12838  1 CIGCGACVAACPVGAITLDEVGEKKGTKTVVI---DPERCVGCGACVAVCP 48
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 4-74 3.63e-05

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 38.92  E-value: 3.63e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 323459616   4 IEVREDRCKGCLLCTTVCPVDIIVQSDRFNVSGYKVAEVpEADKDKCTGCASCAQICPDVAIRVYRTPKKK 74
Cdd:cd10549   35 PEIDEDKCVFCGACVEVCPTGAIELTPEGKEYVPKEKEA-EIDEEKCIGCGLCVKVCPVDAITLEDELEIV 104
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 8-77 4.25e-05

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 38.53  E-value: 4.25e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323459616   8 EDRCKGCLLCTTVCPVDIIVQsdrfnVSGYKVAEVPEADKDKCTGCASCAQICPDVAIRVYRTPKKKEGK 77
Cdd:cd10549    5 PEKCIGCGICVKACPTDAIEL-----GPNGAIARGPEIDEDKCVFCGACVEVCPTGAIELTPEGKEYVPK 69
PRK06991 PRK06991
electron transport complex subunit RsxB;
6-61 6.94e-05

electron transport complex subunit RsxB;


Pssm-ID: 235903 [Multi-domain]  Cd Length: 270  Bit Score: 39.01  E-value: 6.94e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 323459616   6 VREDRCKGCLLCTTVCPVDIIVQSdrfNVSGYKVAEvpeadkDKCTGCASCAQICP 61
Cdd:PRK06991  82 IDEQLCIGCTLCMQACPVDAIVGA---PKQMHTVLA------DLCTGCDLCVPPCP 128
PRK08318 PRK08318
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;
3-24 8.64e-05

NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;


Pssm-ID: 236237 [Multi-domain]  Cd Length: 420  Bit Score: 38.77  E-value: 8.64e-05
                         10        20
                 ....*....|....*....|..
gi 323459616   3 RIEVREDRCKGCLLCTTVCPVD 24
Cdd:PRK08318 371 TPEVIEEECVGCNLCAHVCPVE 392
PRK05113 PRK05113
electron transport complex protein RnfB; Provisional
 6-61 1.10e-04

electron transport complex protein RnfB; Provisional


Pssm-ID: 235347 [Multi-domain]  Cd Length: 191  Bit Score: 38.00  E-value: 1.10e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 323459616   6 VREDRCKGCLLCTTVCPVDIIVQSDRfnvSGYKVAEvpeadkDKCTGCASCAQICP 61
Cdd:PRK05113 111 IDEDNCIGCTKCIQACPVDAIVGATK---AMHTVIS------DLCTGCDLCVAPCP 157
PRK14028 PRK14028
pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
 3-69 1.16e-04

pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional


Pssm-ID: 172522 [Multi-domain]  Cd Length: 312  Bit Score: 38.44  E-value: 1.16e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 323459616   3 RIE---VREDRCKGCLLCTTVCPVDIIVQS--DRFNVSGYKV-AEVPEADKDKCTGCASCAQICPDVAIRVYR 69
Cdd:PRK14028 238 RIDkpvIDHSKCIMCRKCWLYCPDDAIIEAwrEAEGPRGRKFrMKMIDFDYQYCKGCGVCAEVCPTGAIQMVR 310
Fer4_10 pfam13237
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ...
 8-61 1.40e-04

4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 404174 [Multi-domain]  Cd Length: 56  Bit Score: 36.07  E-value: 1.40e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 323459616   8 EDRCKGCLLCTTVCPVDIIVQSdrfNVSGYKVAEVPEADKDKCTGCASCAQICP 61
Cdd:pfam13237  6 PDKCIGCGRCTAACPAGLTRVG---AIVERLEGEAVRIGVWKCIGCGACVEACP 56
DMSOR_beta_like cd16373
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 6-68 1.43e-04

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319895 [Multi-domain]  Cd Length: 154  Bit Score: 37.62  E-value: 1.43e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 323459616   6 VREDRC------KGCLLCTTVCPVDIIVqsdrfnVSGYKVAEVPEADKDKCTGCASCAQICP---DVAIRVY 68
Cdd:cd16373   88 IDKDRClawqggTDCGVCVEACPTEAIA------IVLEDDVLRPVVDEDKCVGCGLCEYVCPvepPKAIVVE 153
SIMIBI_bact_arch cd03110
bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily ...
 5-65 1.65e-04

bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily of SIMIBI superfamily. Proteins in this superfamily contain an ATP-binding domain and use energy from hydrolysis of ATP to transfer electron or ion. The specific function of this family is unknown.


Pssm-ID: 349764 [Multi-domain]  Cd Length: 246  Bit Score: 37.75  E-value: 1.65e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 323459616   5 EVREDRCKGCLLCTTVCpvdiivqsdRFNVSGyKVAEVPEADKDKCTGCASCAQICPDVAI 65
Cdd:cd03110   60 FIDQEKCIRCGNCERVC---------KFGAIL-EFFQKLIVDESLCEGCGACVIICPRGAI 110
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
7-67 1.76e-04

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 37.70  E-value: 1.76e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 323459616   7 REDRCKGCLLCTTVCPVDIIVQSDRFNVSGYKVAEVPEADKDKCTGCASCAQICPDVAIRV 67
Cdd:COG4624   50 CCPRCCLCCCCCCRCCVAISCIQVRGIIIIDKRGPSIIRDKEKCKNCYPCVRACPVKAIKV 110
NapF_like cd10564
NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, ...
 9-61 2.08e-04

NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319886 [Multi-domain]  Cd Length: 139  Bit Score: 36.84  E-value: 2.08e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 323459616   9 DRCKGCLLCTTVCPVDIIVQSDRfnvsGYkvaevPEAD--KDKCTGCASCAQICP 61
Cdd:cd10564   13 DLCTRCGDCVEACPEGIIVRGDG----GF-----PELDfsRGECTFCGACAEACP 58
PRK06273 PRK06273
ferredoxin; Provisional
 6-61 2.42e-04

ferredoxin; Provisional


Pssm-ID: 235764 [Multi-domain]  Cd Length: 165  Bit Score: 37.00  E-value: 2.42e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 323459616   6 VREDRCKGCLLCTTVCPVDIIVQSDRFNVS---GYKVAEVPEADKDKCTGCASCAQICP 61
Cdd:PRK06273  46 VFEELCIGCGGCANVCPTKAIEMIPVEPVKiteGYVKTKIPKIDYEKCVYCLYCHDFCP 104
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 9-75 2.96e-04

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 37.15  E-value: 2.96e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 323459616   9 DRCKGCLLCTTVCPV-DIIVQSDRfnvsgykvaevPEAdKDKCTGCASCAQICPDVAIRVYRTPKKKE 75
Cdd:NF038196 185 DKCIGCGICAKVCPVnNIEMEDGK-----------PVW-GHNCTHCLACIHRCPKEAIEYGKKTKKKG 240
NapF_like cd10564
NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, ...
 14-69 3.80e-04

NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319886 [Multi-domain]  Cd Length: 139  Bit Score: 36.07  E-value: 3.80e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 323459616  14 CLLCTTVCPVDIIvqsdRFNVSGYKVAeVPEADKDKCTGCASCAQICPDVAIRVYR 69
Cdd:cd10564   88 CRSCQDACPTQAI----RFRPRLGGIA-LPELDADACTGCGACVSVCPVGAITLTP 138
PRK00783 PRK00783
DNA-directed RNA polymerase subunit D; Provisional
 3-67 4.55e-04

DNA-directed RNA polymerase subunit D; Provisional


Pssm-ID: 234837 [Multi-domain]  Cd Length: 263  Bit Score: 36.40  E-value: 4.55e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 323459616   3 RIEVREDrCKGCLLCTTVCPVDIIvqsdrfnvsGYKVAEVPEADKDKCTGCASCAQICPDVAIRV 67
Cdd:PRK00783 164 RIEVSED-CDECEKCVEACPRGVL---------ELKEGKLVVTDLLNCSLCKLCERACPGKAIRV 218
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
4-67 5.79e-04

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 36.06  E-value: 5.79e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323459616   4 IEVREDRCKGCLLCTTVCPVDIIV---QSDRFNV---SGYKVAEVPEADKDKCTGCASCAQICPDVAIRV 67
Cdd:PRK07118 163 PVVDEDKCTGCGACVKACPRNVIElipKSARVFVacnSKDKGKAVKKVCEVGCIGCGKCVKACPAGAITM 232
GlpC COG0247
Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy ...
 9-61 7.25e-04

Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy production and conversion];


Pssm-ID: 440017 [Multi-domain]  Cd Length: 420  Bit Score: 35.82  E-value: 7.25e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 323459616   9 DRCKGCLLCTTVCPVDIIVQSDRFN-----------VSGYKVAEVPEADK---DKCTGCASCAQICP 61
Cdd:COG0247   78 DACVGCGFCRAMCPSYKATGDEKDSprgrinllrevLEGELPLDLSEEVYevlDLCLTCKACETACP 144
DMSOR_beta_like cd10550
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 17-73 7.84e-04

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319872 [Multi-domain]  Cd Length: 130  Bit Score: 35.25  E-value: 7.84e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 323459616  17 CTTVCPVDIIVQSDRFNVsgYKVaevpeaDKDKCTGCASCAQICPDVAIRVYRTPKK 73
Cdd:cd10550   57 CVEACPVGAISRDEETGA--VVV------DEDKCIGCGMCVEACPFGAIRVDPETGK 105
DMSOR_beta-like cd04410
Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta ...
 4-67 1.02e-03

Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319870 [Multi-domain]  Cd Length: 136  Bit Score: 35.06  E-value: 1.02e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 323459616   4 IEVREDRCKGCLLCTTVCPVDIIVQSDRFNVSgykvaevpeadkDKCTGCA---------SCAQICPDVAIRV 67
Cdd:cd04410   75 VLIDEDKCIGCGSCVEACPYGAIVFDPEPGKA------------VKCDLCGdrldeglepACVKACPTGALTF 135
PRK13795 PRK13795
hypothetical protein; Provisional
 3-23 1.20e-03

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 35.36  E-value: 1.20e-03
                         10        20
                 ....*....|....*....|.
gi 323459616   3 RIEVREDRCKGCLLCTTVCPV 23
Cdd:PRK13795 606 KISVDEEKCIHCGKCTEVCPV 626
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 41-67 1.27e-03

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 33.87  E-value: 1.27e-03
                        10        20
                ....*....|....*....|....*..
gi 323459616 41 EVPEADKDKCTGCASCAQICPDVAIRV 67
Cdd:COG1144  23 ERPVVDEDKCIGCGLCWIVCPDGAIRV 49
PRK13984 PRK13984
putative oxidoreductase; Provisional
 9-60 1.35e-03

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 35.13  E-value: 1.35e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 323459616   9 DRCKGCLLCTTVCPVDIIVQSDRFNVSGY--KVAEVPEADKDKCTGCASCAQIC 60
Cdd:PRK13984  45 EKCIGCGTCSKICPTDAITMVEVPDLPQEygKKPQRPVIDYGRCSFCALCVDIC 98
HycB COG1142
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];
17-74 1.43e-03

Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];


Pssm-ID: 440757 [Multi-domain]  Cd Length: 138  Bit Score: 34.63  E-value: 1.43e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 323459616  17 CTTVCPVDIIVQSDrfnvsgykvaEVPEADKDKCTGCASCAQICPDVAIRVYRTPKKK 74
Cdd:COG1142   60 CAEVCPVGAITRDD----------GAVVVDEEKCIGCGLCVLACPFGAITMVGEKSRA 107
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
42-67 1.83e-03

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 34.84  E-value: 1.83e-03
                         10        20
                 ....*....|....*....|....*.
gi 323459616  42 VPEADKDKCTGCASCAQICPDVAIRV 67
Cdd:COG1148  490 VAEVDPEKCTGCGRCVEVCPYGAISI 515
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
11-61 1.98e-03

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 34.52  E-value: 1.98e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 323459616  11 CKGCLLCTTVCPVDIIVQSDRFnvsgykvaevPEADKDKCTGCASCAQICP 61
Cdd:PRK07118 141 CLGLGSCVAACPFDAIHIENGL----------PVVDEDKCTGCGACVKACP 181
pyruv_ox_red TIGR02176
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; This model represents a single ...
 9-61 2.00e-03

pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.


Pssm-ID: 131231 [Multi-domain]  Cd Length: 1165  Bit Score: 34.75  E-value: 2.00e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323459616     9 DRCKGCLLCTTVCPVDIIV-----------QSDRFNVSGYKVAEVP------EADKDKCTGCASCAQICP 61
Cdd:TIGR02176  683 DNCIQCNQCAFVCPHAAIRpkladeeelenAPAGFKSLDAKGKELEgmkfriQISPLDCTGCGNCVDICP 752
PRK13984 PRK13984
putative oxidoreductase; Provisional
 46-71 2.40e-03

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 34.74  E-value: 2.40e-03
                         10        20
                 ....*....|....*....|....*.
gi 323459616  46 DKDKCTGCASCAQICPDVAIRVYRTP 71
Cdd:PRK13984  43 DWEKCIGCGTCSKICPTDAITMVEVP 68
napF TIGR00402
ferredoxin-type protein NapF; The gene codes for a ferredoxin-type cytosolic protein, NapF, of ...
 10-61 2.53e-03

ferredoxin-type protein NapF; The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation. [Energy metabolism, Electron transport]


Pssm-ID: 273060 [Multi-domain]  Cd Length: 101  Bit Score: 33.38  E-value: 2.53e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 323459616   10 RCKGCLLCTTVCPVDIIVQSDrfnvSGYKVAEVpeaDKDKCTGCASCAQICP 61
Cdd:TIGR00402  35 VCTRCGECASACENNILQLGQ----QGQPTVEF---DNAECDFCGKCAEACP 79
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 11-66 2.58e-03

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 34.47  E-value: 2.58e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 323459616  11 CKGCLLCTTVCPVDIIVqsdRFNVSGYKvaevpEADKDKCTGCASCAQICPDVAIR 66
Cdd:PRK12771 512 CFECDNCYGACPQDAII---KLGPGRRY-----HFDYDKCTGCHICADVCPCGAIE 559
PRK08348 PRK08348
NADH-plastoquinone oxidoreductase subunit; Provisional
 9-66 2.58e-03

NADH-plastoquinone oxidoreductase subunit; Provisional


Pssm-ID: 181399 [Multi-domain]  Cd Length: 120  Bit Score: 33.66  E-value: 2.58e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 323459616   9 DRCKGCLLCTTVCPVDIIVQsdrfnvsgykvaeVPEADK-----DKCTGCASCAQICPDVAIR 66
Cdd:PRK08348  42 DKCVGCRMCVTVCPAGVFVY-------------LPEIRKvalwtGRCVFCGQCVDVCPTGALQ 91
RnfB COG2878
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and ...
 6-69 2.97e-03

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 442125 [Multi-domain]  Cd Length: 254  Bit Score: 34.20  E-value: 2.97e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 323459616   6 VREDRCKGCLLCTTVCPVDII----VQSDRFNVSGYKVAEVPEAdkDKCTGCAsCAQICPDVAIRVYR 69
Cdd:COG2878  164 VDEDKCTGCGLCVEACPVDCIemvpVSPTVVVSSWDKGKAVRKV--VGCIGLC-CKKCCPAAAITVNN 228
FDH_b_like cd10562
uncharacterized subfamily of beta subunit of formate dehydrogenase; This subfamily includes ...
 17-73 3.45e-03

uncharacterized subfamily of beta subunit of formate dehydrogenase; This subfamily includes the beta-subunit of formate dehydrogenases that are as yet uncharacterized. Members of the DMSO reductase family include formate dehydrogenase N and O (FDH-N, FDH-O) and tungsten-containing formate dehydrogenase (W-FDH) and other similar proteins. FDH-N, a major component of nitrate respiration of Escherichia coli, is involved in the major anaerobic respiratory pathway in the presence of nitrate, catalyzing the oxidation of formate to carbon dioxide at the expense of nitrate reduction to nitrite. It forms a heterotrimer; the alpha-subunit (FDH-G) is the catalytic site of formate oxidation and membrane-associated, incorporating a selenocysteine (SeCys) residue and a [4Fe/4S] cluster in addition to two bis-MGD cofactors, the beta subunit (FDH-H) contains four [4Fe/4S] clusters which transfer the electrons from the alpha subunit to the gamma-subunit (FDH-I), a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. W-FDH contains a tungsten instead of molybdenum at the catalytic center. This enzyme seems to be exclusively found in organisms such as hyperthermophilic archaea that live in extreme environments. It is a heterodimer of a large and a small subunit; the large subunit harbors the W site and one [4Fe-4S] center and the small subunit, containing three [4Fe-4S] clusters, functions to transfer electrons.


Pssm-ID: 319884 [Multi-domain]  Cd Length: 161  Bit Score: 33.82  E-value: 3.45e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 323459616  17 CTTVCPVDIIVQSDRFNVSgykvaevpeADKDKCTGCASCAQICPDVAIRVYRTPKK 73
Cdd:cd10562   78 CVKVCPTGALYKTENGAVV---------VDEDKCIGCGYCVAACPFDVPRYDETTNK 125
Fer COG1141
Ferredoxin [Energy production and conversion];
44-63 4.87e-03

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 32.16  E-value: 4.87e-03
                        10        20
                ....*....|....*....|
gi 323459616 44 EADKDKCTGCASCAQICPDV 63
Cdd:COG1141   4 TVDRDTCIGCGLCVALAPEV 23
vorD PRK09623
3-methyl-2-oxobutanoate dehydrogenase subunit delta;
6-72 6.47e-03

3-methyl-2-oxobutanoate dehydrogenase subunit delta;


Pssm-ID: 170016 [Multi-domain]  Cd Length: 105  Bit Score: 32.61  E-value: 6.47e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 323459616   6 VREDRCKGCLLCTTVCPVDII-VQSDRFnvsgykVAevpeADKDKCTGCASCAQICPDVAIRVYRTPK 72
Cdd:PRK09623  48 VDESKCVKCYICWKFCPEPAIyIKEDGY------VA----IDYDYCKGCGICANECPTKAITMVKEEK 105
PRK09898 PRK09898
ferredoxin-like protein;
4-67 7.41e-03

ferredoxin-like protein;


Pssm-ID: 182135 [Multi-domain]  Cd Length: 208  Bit Score: 32.89  E-value: 7.41e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 323459616   4 IEVREDRCKGCLLCTTVCPvdiivqsdrfnvsgYKVAEVPEADKD--KCTGCASCAQICPDVAIRV 67
Cdd:PRK09898 149 ITVDHKRCIGCSACTTACP--------------WMMATVNTESKKssKCVLCGECANACPTGALKI 200
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 47-67 9.31e-03

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 32.39  E-value: 9.31e-03
                          10        20
                  ....*....|....*....|.
gi 323459616   47 KDKCTGCASCAQICPDVAIRV 67
Cdd:TIGR01971  42 EEKCIGCTLCAAVCPADAIRV 62
PRK05888 PRK05888
NADH-quinone oxidoreductase subunit NuoI;
49-77 9.37e-03

NADH-quinone oxidoreductase subunit NuoI;


Pssm-ID: 235637 [Multi-domain]  Cd Length: 164  Bit Score: 32.55  E-value: 9.37e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 323459616  49 KCTGCASCAQICPDVAIRVY---RTPKKKEGK 77
Cdd:PRK05888  59 RCIACKLCAAICPADAITIEaaeREDGRRRTT 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH