DNA-binding helix-turn-helix protein [Acinetobacter haemolyticus ATCC 19194]
helix-turn-helix domain-containing protein( domain architecture ID 11466506)
helix-turn-helix (HTH) domain-containing protein with an XRE (Xenobiotic Response Element) family HTH domain, binds DNA and may function as a transcriptional regulator
List of domain hits
Name | Accession | Description | Interval | E-value | ||
AF2118 | COG3620 | Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ... |
29-97 | 6.57e-11 | ||
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription]; : Pssm-ID: 442838 [Multi-domain] Cd Length: 95 Bit Score: 53.87 E-value: 6.57e-11
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Name | Accession | Description | Interval | E-value | |||
AF2118 | COG3620 | Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ... |
29-97 | 6.57e-11 | |||
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription]; Pssm-ID: 442838 [Multi-domain] Cd Length: 95 Bit Score: 53.87 E-value: 6.57e-11
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HTH_37 | pfam13744 | Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. |
8-89 | 1.21e-09 | |||
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. Pssm-ID: 433449 [Multi-domain] Cd Length: 80 Bit Score: 50.30 E-value: 1.21e-09
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HTH_XRE | smart00530 | Helix-turn-helix XRE-family like proteins; |
36-85 | 1.17e-08 | |||
Helix-turn-helix XRE-family like proteins; Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 47.13 E-value: 1.17e-08
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HTH_XRE | cd00093 | Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
31-81 | 2.47e-07 | |||
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators. Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 43.70 E-value: 2.47e-07
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PRK09726 | PRK09726 | type II toxin-antitoxin system antitoxin HipB; |
29-81 | 5.36e-06 | |||
type II toxin-antitoxin system antitoxin HipB; Pssm-ID: 182049 Cd Length: 88 Bit Score: 41.12 E-value: 5.36e-06
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Name | Accession | Description | Interval | E-value | |||
AF2118 | COG3620 | Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ... |
29-97 | 6.57e-11 | |||
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription]; Pssm-ID: 442838 [Multi-domain] Cd Length: 95 Bit Score: 53.87 E-value: 6.57e-11
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HTH_37 | pfam13744 | Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. |
8-89 | 1.21e-09 | |||
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. Pssm-ID: 433449 [Multi-domain] Cd Length: 80 Bit Score: 50.30 E-value: 1.21e-09
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HTH_XRE | smart00530 | Helix-turn-helix XRE-family like proteins; |
36-85 | 1.17e-08 | |||
Helix-turn-helix XRE-family like proteins; Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 47.13 E-value: 1.17e-08
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HTH_XRE | cd00093 | Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
31-81 | 2.47e-07 | |||
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators. Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 43.70 E-value: 2.47e-07
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XRE | COG1476 | DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; |
29-81 | 3.65e-07 | |||
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; Pssm-ID: 441085 [Multi-domain] Cd Length: 68 Bit Score: 43.30 E-value: 3.65e-07
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HTH_3 | pfam01381 | Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ... |
33-85 | 7.48e-07 | |||
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family. Pssm-ID: 460181 [Multi-domain] Cd Length: 55 Bit Score: 42.53 E-value: 7.48e-07
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PRK09726 | PRK09726 | type II toxin-antitoxin system antitoxin HipB; |
29-81 | 5.36e-06 | |||
type II toxin-antitoxin system antitoxin HipB; Pssm-ID: 182049 Cd Length: 88 Bit Score: 41.12 E-value: 5.36e-06
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HipB | COG1396 | Transcriptional regulator, contains XRE-family HTH domain [Transcription]; |
36-81 | 1.75e-05 | |||
Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Pssm-ID: 441006 [Multi-domain] Cd Length: 83 Bit Score: 39.59 E-value: 1.75e-05
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HTH_19 | pfam12844 | Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. ... |
33-81 | 5.82e-05 | |||
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains. Pssm-ID: 463728 [Multi-domain] Cd Length: 64 Bit Score: 37.65 E-value: 5.82e-05
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COG1709 | COG1709 | Predicted transcriptional regulator,contains XRE-type HTH domain [Transcription]; |
37-89 | 2.01e-03 | |||
Predicted transcriptional regulator,contains XRE-type HTH domain [Transcription]; Pssm-ID: 441315 Cd Length: 234 Bit Score: 35.54 E-value: 2.01e-03
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RodZ | COG1426 | Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ... |
32-63 | 2.51e-03 | |||
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 441035 [Multi-domain] Cd Length: 71 Bit Score: 33.62 E-value: 2.51e-03
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VapI | COG3093 | Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense ... |
26-63 | 2.77e-03 | |||
Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense mechanisms]; Pssm-ID: 442327 [Multi-domain] Cd Length: 87 Bit Score: 34.01 E-value: 2.77e-03
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aMBF1 | COG1813 | Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and ... |
37-63 | 5.71e-03 | |||
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis]; Pssm-ID: 441418 [Multi-domain] Cd Length: 70 Bit Score: 32.60 E-value: 5.71e-03
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Blast search parameters | ||||
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