|
Name |
Accession |
Description |
Interval |
E-value |
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
6-329 |
0e+00 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 701.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 6 MAQYKDNLLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGH 85
Cdd:PRK11608 1 MAEYKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 86 EAGAFTGASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGH 165
Cdd:PRK11608 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 166 FRADLLDRLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPLFPGFSERATATLLGYRWPGNIRELKNVVERSVYRH 245
Cdd:PRK11608 161 FRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 246 GDSEHELDAIILNPFRQTAASVPEA-ASGDELPALPLDLRDFQLQQEKRLLQRSLQQAKYHQKQAAELLGLTYHQLRALL 324
Cdd:PRK11608 241 GTSEYPLDNIIIDPFKRRPAEEAIAvSETTSLPTLPLDLREWQHQQEKELLQRSLQQAKFNQKRAAELLGLTYHQLRALL 320
|
....*
gi 289779299 325 KKHQL 329
Cdd:PRK11608 321 KKHQI 325
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
13-327 |
0e+00 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 593.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 13 LLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFTG 92
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 93 ASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADLLD 172
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 173 RLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPLFPGFSERATATLLGYRWPGNIRELKNVVERSVYRHGDSEHEL 252
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEEAPI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 253 DAIILNPF----RQTAAsVPEAASGDELPA-----------LPLDLRDFQLQQEKRLLQRSLQQAKYHQKQAAELLGLTY 317
Cdd:TIGR02974 241 DEIIIDPFaspwRPKQA-APAVDEVNSTPTdlpspssiaaaFPLDLKQAQQDYEIELLQQALAEAQFNQRKAAELLGLTY 319
|
330
....*....|
gi 289779299 318 HQLRALLKKH 327
Cdd:TIGR02974 320 HQLRGLLRKH 329
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
11-329 |
3.50e-118 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 347.91 E-value: 3.50e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 11 DNLLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAF 90
Cdd:COG3829 138 DDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAF 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 91 TGASKR-HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRAD 169
Cdd:COG3829 218 TGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFRED 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 170 LLDRLAfdVV--QLPPLRERQSDIMLLANQFAIQMCRELGLPlFPGFSERATATLLGYRWPGNIRELKNVVERSVYRHGD 247
Cdd:COG3829 298 LYYRLN--VIpiHIPPLRERKEDIPLLAEHFLEKFNKKYGKN-IKGISPEALELLLAYDWPGNVRELENVIERAVVLSEG 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 248 SEHELDAIILNPFRQTAASVPEAasgdelpalPLDLRDFQLQQEKRLLQRSLQQAKYHQKQAAELLGLTYHQLRALLKKH 327
Cdd:COG3829 375 DVITPEHLPEYLLEEAEAASAAE---------EGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKY 445
|
..
gi 289779299 328 QL 329
Cdd:COG3829 446 GI 447
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
13-181 |
6.24e-93 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 273.51 E-value: 6.24e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 13 LLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFTG 92
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 93 ASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADLLD 172
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*....
gi 289779299 173 RLAfdVVQL 181
Cdd:pfam00158 161 RLN--VIPI 167
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
10-321 |
1.21e-78 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 249.02 E-value: 1.21e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 10 KDNLLGEANSFLEVLEQVSRLAPLDK-PVLVIGERGTGKELIANRLHYLSSR---WQGPFISLNCAALNDNLLDSELFGH 85
Cdd:NF038308 178 KSGIATRNAAFNRLIEQIERVALRSRaPILLTGPTGAGKSFLARRIYELKKRrhqVSGPFVEVNCATLRGDLAMSELFGH 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 86 EAGAFTGASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGH 165
Cdd:NF038308 258 VKGAFTGAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGR 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 166 FRADLLDRLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPLF----PGFSERATATLLGYRWPGNIRELKNVVERS 241
Cdd:NF038308 338 FREDLYARINLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVRfnkeARFRYLAFATSPEALWPGNFRELSASVTRM 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 242 V-YRHGD--SEHELDAIIL------NPFRQTAASVPEAASGDELPALPLDLRDfqlQQEKRLLQRSLQQAKYHQKQAAEL 312
Cdd:NF038308 418 AtLADGGriTEELVEEEIArlraawQSAPAAADDDALADLLGGEQLAELDLFD---RVQLAAVLRVCRQSRSLSAAGRRL 494
|
....*....
gi 289779299 313 LGLTYHQLR 321
Cdd:NF038308 495 FGVSRQQKA 503
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
22-183 |
4.51e-22 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 90.67 E-value: 4.51e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 22 EVLEQVSRLAPLD--KPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEagaftgASKRHPG 99
Cdd:cd00009 5 EAIEALREALELPppKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVRLLFE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 100 RFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGsqplqVNVRLVCATNADLPrmveeGHFRADLLDRLaFDVV 179
Cdd:cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDR-----ENVRVIGATNRPLL-----GDLDRALYDRL-DIRI 147
|
....
gi 289779299 180 QLPP 183
Cdd:cd00009 148 VIPL 151
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
35-185 |
2.79e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.77 E-value: 2.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 35 KPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFTGASKRHPGR--FERA---DGGTL 109
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRlaLALArklKPDVL 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 289779299 110 FLDELATAPMLVQEKLLRVIeygELERVGGSQPLQVNVRLVCATNadlprmvEEGHFRADLLDRLAFDVVQLPPLR 185
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLL---EELRLLLLLKSEKNLTVILTTN-------DEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
6-329 |
0e+00 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 701.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 6 MAQYKDNLLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGH 85
Cdd:PRK11608 1 MAEYKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 86 EAGAFTGASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGH 165
Cdd:PRK11608 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 166 FRADLLDRLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPLFPGFSERATATLLGYRWPGNIRELKNVVERSVYRH 245
Cdd:PRK11608 161 FRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 246 GDSEHELDAIILNPFRQTAASVPEA-ASGDELPALPLDLRDFQLQQEKRLLQRSLQQAKYHQKQAAELLGLTYHQLRALL 324
Cdd:PRK11608 241 GTSEYPLDNIIIDPFKRRPAEEAIAvSETTSLPTLPLDLREWQHQQEKELLQRSLQQAKFNQKRAAELLGLTYHQLRALL 320
|
....*
gi 289779299 325 KKHQL 329
Cdd:PRK11608 321 KKHQI 325
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
13-327 |
0e+00 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 593.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 13 LLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFTG 92
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 93 ASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADLLD 172
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 173 RLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPLFPGFSERATATLLGYRWPGNIRELKNVVERSVYRHGDSEHEL 252
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEEAPI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 253 DAIILNPF----RQTAAsVPEAASGDELPA-----------LPLDLRDFQLQQEKRLLQRSLQQAKYHQKQAAELLGLTY 317
Cdd:TIGR02974 241 DEIIIDPFaspwRPKQA-APAVDEVNSTPTdlpspssiaaaFPLDLKQAQQDYEIELLQQALAEAQFNQRKAAELLGLTY 319
|
330
....*....|
gi 289779299 318 HQLRALLKKH 327
Cdd:TIGR02974 320 HQLRGLLRKH 329
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
11-329 |
3.50e-118 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 347.91 E-value: 3.50e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 11 DNLLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAF 90
Cdd:COG3829 138 DDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAF 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 91 TGASKR-HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRAD 169
Cdd:COG3829 218 TGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFRED 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 170 LLDRLAfdVV--QLPPLRERQSDIMLLANQFAIQMCRELGLPlFPGFSERATATLLGYRWPGNIRELKNVVERSVYRHGD 247
Cdd:COG3829 298 LYYRLN--VIpiHIPPLRERKEDIPLLAEHFLEKFNKKYGKN-IKGISPEALELLLAYDWPGNVRELENVIERAVVLSEG 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 248 SEHELDAIILNPFRQTAASVPEAasgdelpalPLDLRDFQLQQEKRLLQRSLQQAKYHQKQAAELLGLTYHQLRALLKKH 327
Cdd:COG3829 375 DVITPEHLPEYLLEEAEAASAAE---------EGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKY 445
|
..
gi 289779299 328 QL 329
Cdd:COG3829 446 GI 447
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
7-327 |
2.17e-113 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 335.01 E-value: 2.17e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 7 AQYKDNLLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHE 86
Cdd:COG2204 127 NAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGHE 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 87 AGAFTGASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHF 166
Cdd:COG2204 207 KGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGRF 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 167 RADLLDRLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPlfPGFSERATATLLGYRWPGNIRELKNVVERsvyrhg 246
Cdd:COG2204 287 REDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKP--VKLSPEALEALLAYDWPGNVRELENVIER------ 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 247 dseheldAIILnpfrqtaasvpeaASGDELPA--LPLDLRDFqlqqEKRLLQRSLQQAKYHQKQAAELLGLTYHQLRALL 324
Cdd:COG2204 359 -------AVIL-------------ADGEVITAedLPEALEEV----ERELIERALEETGGNVSRAAELLGISRRTLYRKL 414
|
...
gi 289779299 325 KKH 327
Cdd:COG2204 415 KKY 417
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
11-327 |
2.40e-97 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 297.78 E-value: 2.40e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 11 DNLLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAF 90
Cdd:TIGR01817 196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAF 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 91 TGASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADL 170
Cdd:TIGR01817 276 TGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADL 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 171 LDRLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPLfpGFSERATATLLGYRWPGNIRELKNVVERS--------- 241
Cdd:TIGR01817 356 YYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPL--TITPSAIRVLMSCKWPGNVRELENCLERTatlsrsgti 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 242 -----VYRHGDSE-------HELDAIILNPFRQTAAsvPEAASGDELPALPlDLRDFQLQQEKRLLQrSLQQAKYHQKQA 309
Cdd:TIGR01817 434 trsdfSCQSGQCLspmlaktCPHGHISIDPLAGTTP--PHSPASAALPGEP-GLSGPTLSERERLIA-ALEQAGWVQAKA 509
|
330
....*....|....*...
gi 289779299 310 AELLGLTYHQLRALLKKH 327
Cdd:TIGR01817 510 ARLLGMTPRQVGYALRKL 527
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
13-181 |
6.24e-93 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 273.51 E-value: 6.24e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 13 LLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFTG 92
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 93 ASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADLLD 172
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*....
gi 289779299 173 RLAfdVVQL 181
Cdd:pfam00158 161 RLN--VIPI 167
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
13-315 |
4.98e-88 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 272.82 E-value: 4.98e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 13 LLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFTG 92
Cdd:PRK05022 189 MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTG 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 93 ASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADLLD 172
Cdd:PRK05022 269 AISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 173 RLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLP-LfpGFSERATATLLGYRWPGNIRELKNVVERSVYRhGDSEHE 251
Cdd:PRK05022 349 RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRsL--RLSPAAQAALLAYDWPGNVRELEHVISRAALL-ARARGA 425
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 289779299 252 LDAIILNP----FRQTAASVPEAASGDELPALPLDLRD----FQlqqeKRLLQRSLQQAKYHQKQAAELLGL 315
Cdd:PRK05022 426 GRIVTLEAqhldLPAEVALPPPEAAAAPAAVVSQNLREateaFQ----RQLIRQALAQHQGNWAAAARALEL 493
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
11-314 |
4.78e-87 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 273.70 E-value: 4.78e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 11 DNLLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAF 90
Cdd:COG3284 321 AALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAF 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 91 TGASKR-HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRAD 169
Cdd:COG3284 401 TGARRKgRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFRED 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 170 LLDRLAFDVVQLPPLRERqSDIMLLANQFAIQMCRELGlplFPGFSERATATLLGYRWPGNIRELKNVVERSVYRHGDSE 249
Cdd:COG3284 481 LYYRLNGLTLTLPPLRER-EDLPALIEHLLRELAAGRG---PLRLSPEALALLAAYPWPGNVRELRNVLRTALALADGGV 556
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 289779299 250 HELDAIilnP--FRQTAASVPEAAsgdELPALPLDlrdfqlQQEKRLLQRSLQQAKYHQKQAAELLG 314
Cdd:COG3284 557 ITVEDL---PdeLRAELAAAAPAA---AAPLTSLE------EAERDAILRALRACGGNVSAAARALG 611
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
13-329 |
1.06e-86 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 267.38 E-value: 1.06e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 13 LLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFTG 92
Cdd:TIGR02915 141 LITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 93 ASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADLLD 172
Cdd:TIGR02915 221 AVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 173 RLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPLFpGFSERATATLLGYRWPGNIRELKNVVERSVyrhgdsehel 252
Cdd:TIGR02915 301 RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTK-GFTDDALRALEAHAWPGNVRELENKVKRAV---------- 369
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 289779299 253 daIILNPFRQTAASVPEAASGDELPALPLDLRDFQLQQEKRLLQRSLQQAKYHQKQAAELLGLTYHQLRALLKKHQL 329
Cdd:TIGR02915 370 --IMAEGNQITAEDLGLDARERAETPLEVNLREVRERAEREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKHGI 444
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
11-297 |
2.46e-85 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 265.90 E-value: 2.46e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 11 DNLLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAF 90
Cdd:COG3283 204 DHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAF 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 91 TGASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADL 170
Cdd:COG3283 284 GNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 171 LDRLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPLfPGFSERATATLLGYRWPGNIRELKNVVERSVyrhgdseH 250
Cdd:COG3283 364 YYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPR-PRLSPDLVDFLQSYPWPGNVRQLENALYRAV-------S 435
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 289779299 251 ELDAIILNPFR-QTAASVPEAASGDELPALPLD--LRDFqlqqEKRLLQR 297
Cdd:COG3283 436 LLEGDELTPEDlQLPEYAASAGLLDDLLEGSLDeiVKRF----ERSLLRR 481
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
21-328 |
4.32e-84 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 261.32 E-value: 4.32e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 21 LEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFTGASKRHPGR 100
Cdd:PRK11361 153 MDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 101 FERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADLLDRLAFDVVQ 180
Cdd:PRK11361 233 FERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 181 LPPLRERQSDIMLLANQFAIQMCRELGLPLFpGFSERATATLLGYRWPGNIRELKNVVERSVYRhgdsehELDAIIL--- 257
Cdd:PRK11361 313 LPPLRDRREDISLLANHFLQKFSSENQRDII-DIDPMAMSLLTAWSWPGNIRELSNVIERAVVM------NSGPIIFsed 385
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 289779299 258 --NPFRQTAASVPEAASgdeLPALPLDLRDFQLQQEKRLLQRSLQQAKYHQKQAAELLGLTYhqlRALLKKHQ 328
Cdd:PRK11361 386 lpPQIRQPVCNAGEVKT---APVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISR---RALMYKLQ 452
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
13-325 |
2.43e-82 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 256.97 E-value: 2.43e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 13 LLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFTG 92
Cdd:TIGR01818 136 LIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 93 ASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADLLD 172
Cdd:TIGR01818 216 ANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 173 RLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPLfPGFSERATATLLGYRWPGNIRELKNVVER-SVYRHGDsehE 251
Cdd:TIGR01818 296 RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEP-KLLDPEALERLKQLRWPGNVRQLENLCRWlTVMASGD---E 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 252 LDAIILNP---FRQTAASVPEAASGDELPAL------------PLDLRDFQLQQ-EKRLLQRSLQQAKYHQKQAAELLGL 315
Cdd:TIGR01818 372 VLVSDLPAelaLTGRPASAPDSDGQDSWDEAleawakqalsrgEQGLLDRALPEfERPLLEAALQHTRGHKQEAAALLGW 451
|
330
....*....|
gi 289779299 316 TYHQLRALLK 325
Cdd:TIGR01818 452 GRNTLTRKLK 461
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
13-326 |
7.74e-79 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 247.25 E-value: 7.74e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 13 LLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFTG 92
Cdd:PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 93 ASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADLLD 172
Cdd:PRK10365 221 ADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 173 RLAFDVVQLPPLRERQSDIMLLANQFaIQMCRELGLPLFPGFSERATATLLGYRWPGNIRELKNVVERSVyrhgdsehel 252
Cdd:PRK10365 301 RLNVVAIEVPSLRQRREDIPLLAGHF-LQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAV---------- 369
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 289779299 253 daIILNPFRQTAASVPEAASGDELPALPLDLRDFQLQQEKRLLQRSLQQAKYHQKQAAELLGLTYHQLRALLKK 326
Cdd:PRK10365 370 --VLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
10-321 |
1.21e-78 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 249.02 E-value: 1.21e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 10 KDNLLGEANSFLEVLEQVSRLAPLDK-PVLVIGERGTGKELIANRLHYLSSR---WQGPFISLNCAALNDNLLDSELFGH 85
Cdd:NF038308 178 KSGIATRNAAFNRLIEQIERVALRSRaPILLTGPTGAGKSFLARRIYELKKRrhqVSGPFVEVNCATLRGDLAMSELFGH 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 86 EAGAFTGASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGH 165
Cdd:NF038308 258 VKGAFTGAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGR 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 166 FRADLLDRLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPLF----PGFSERATATLLGYRWPGNIRELKNVVERS 241
Cdd:NF038308 338 FREDLYARINLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVRfnkeARFRYLAFATSPEALWPGNFRELSASVTRM 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 242 V-YRHGD--SEHELDAIIL------NPFRQTAASVPEAASGDELPALPLDLRDfqlQQEKRLLQRSLQQAKYHQKQAAEL 312
Cdd:NF038308 418 AtLADGGriTEELVEEEIArlraawQSAPAAADDDALADLLGGEQLAELDLFD---RVQLAAVLRVCRQSRSLSAAGRRL 494
|
....*....
gi 289779299 313 LGLTYHQLR 321
Cdd:NF038308 495 FGVSRQQKA 503
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
11-316 |
1.39e-75 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 241.55 E-value: 1.39e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 11 DNLLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLH--------YLSSRWQGPFISLNCAALNDNLLDSEL 82
Cdd:PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNCGAIAESLLEAEL 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 83 FGHEAGAFTGaSKR--HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRM 160
Cdd:PRK15424 299 FGYEEGAFTG-SRRggRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEED 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 161 VEEGHFRADLLDRLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPLFPGFSER---ATATLLGYRWPGNIRELKNV 237
Cdd:PRK15424 378 VRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGlqqCETLLLHYDWPGNVRELRNL 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 238 VER-SVYRHGDSEHELDAIILN---PFRQTAASVPEAASgdelpalpldlrdfqlqQEKRLLQRSLQQAKYHQKQAAELL 313
Cdd:PRK15424 458 MERlALFLSVEPTPDLTPQFLQlllPELARESAKTPAPR-----------------LLAATLQQALERFNGDKTAAANYL 520
|
...
gi 289779299 314 GLT 316
Cdd:PRK15424 521 GIS 523
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
12-326 |
1.12e-71 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 229.37 E-value: 1.12e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 12 NLLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFT 91
Cdd:PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 92 GASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADLL 171
Cdd:PRK10923 219 GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 172 DRLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPLfPGFSERATATLLGYRWPGNIRELKNVVERSVYRHGDSEHE 251
Cdd:PRK10923 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEA-KLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 252 LDAIILNPFRQTAASVPEAASGDELPALPLD-------------LRDFQLQQEKRLLQRSLQQAKYHQKQAAELLGLTYH 318
Cdd:PRK10923 378 IQDLPGELFESTVPESTSQMQPDSWATLLAQwadralrsghqnlLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRN 457
|
....*...
gi 289779299 319 QLRALLKK 326
Cdd:PRK10923 458 TLTRKLKE 465
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
13-242 |
6.49e-67 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 222.01 E-value: 6.49e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 13 LLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFTG 92
Cdd:PRK15429 378 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTG 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 93 ASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADLLD 172
Cdd:PRK15429 458 ASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 537
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 289779299 173 RLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPL--FPGFSERataTLLGYRWPGNIRELKNVVERSV 242
Cdd:PRK15429 538 RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIdsIPAETLR---TLSNMEWPGNVRELENVIERAV 606
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
22-276 |
3.84e-65 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 213.78 E-value: 3.84e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 22 EVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFTGASKRHPGRF 101
Cdd:PRK10820 215 QVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFF 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 102 ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADLLDRLAFDVVQL 181
Cdd:PRK10820 295 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 182 PPLRERQSDIMLLANQFAIQMCRELGLPLfPGFSERATATLLGYRWPGNIRELKNVVERSVYRHGDSEHELDAIILNPFr 261
Cdd:PRK10820 375 PPLRDRPQDIMPLTELFVARFADEQGVPR-PKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDILLPDY- 452
|
250
....*....|....*
gi 289779299 262 qtaasVPEAASGDEL 276
Cdd:PRK10820 453 -----DAAVAVGEDA 462
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
21-329 |
9.65e-64 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 205.08 E-value: 9.65e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 21 LEVLEQVSRLAPldkpVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSelfgheagaftgaskrhpgr 100
Cdd:COG3604 106 LRLLETLASLAA----VAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 101 feradggtlfldelatapmlvqekllrvIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADLLDRLAFDVVQ 180
Cdd:COG3604 162 ----------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIR 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 181 LPPLRERQSDIMLLANQFAIQMCRELGLPLfPGFSERATATLLGYRWPGNIRELKNVVERsvyrhgdseheldAIILNPF 260
Cdd:COG3604 214 LPPLRERREDIPLLAEHFLEKFSRRLGKPI-LRLSPEALEALMAYPWPGNVRELENVIER-------------AVILAEG 279
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 289779299 261 RQTAASVPEAASGDELPALpldlrdfqlqqEKRLLQRSLQQAKYHQKQAAELLGLTYHQLRALLKKHQL 329
Cdd:COG3604 280 GVLDADDLAPGSREALEEV-----------EREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKLGI 337
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
8-329 |
1.72e-63 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 207.77 E-value: 1.72e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 8 QYKDNLLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEA 87
Cdd:PRK15115 131 RWREAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHAR 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 88 GAFTGASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFR 167
Cdd:PRK15115 211 GAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFR 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 168 ADLLDRLAFDVVQLPPLRERQSDIMLLANQFAIQMCrELGLPLFPGFSERATATLLGYRWPGNIRELKNVVERSVyrhgd 247
Cdd:PRK15115 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAA-ERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCV----- 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 248 seheldAIILNPFrQTAASVPEAASGDElPALPlDLRDFQLQQEKRLLQRSLQQAKYHQKQAAELLGLTYHQLRALLKKH 327
Cdd:PRK15115 365 ------ALTSSPV-ISDALVEQALEGEN-TALP-TFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435
|
..
gi 289779299 328 QL 329
Cdd:PRK15115 436 EL 437
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
11-329 |
2.56e-47 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 168.70 E-value: 2.56e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 11 DNLLGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGheaGAF 90
Cdd:PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG---SDR 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 91 TGASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADL 170
Cdd:PRK11388 402 TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQL 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 171 LDRLAFDVVQLPPLRERQSDIMLLANQFAIQMCRELGLPLFPgfSERATATLLGYRWPGNIRELKNVVERSVYRHGDSEH 250
Cdd:PRK11388 482 YYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKI--DDDALARLVSYRWPGNDFELRSVIENLALSSDNGRI 559
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 289779299 251 ELDAIILNPFRQTAASVPEAasgdelPALPLDLRDFQLqqEKRLLQRSLQQAKYHQKQAAELLGLTYHQLRALLKKHQL 329
Cdd:PRK11388 560 RLSDLPEHLFTEQATDDVSA------TRLSTSLSLAEL--EKEAIINAAQVCGGRIQEMAALLGIGRTTLWRKMKQHGI 630
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
36-238 |
2.01e-31 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 124.45 E-value: 2.01e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 36 PVLVIGERGTGKELIANRLH-YlsSRWQG------PFISLNCA--ALNDNLLDSELFGHEAGAFTGASKRHPGRFERADG 106
Cdd:COG1221 132 HTLILGPTGVGKSFFAELMYeY--AIEIGvlpedaPFVVFNCAdyANNPQLLMSQLFGYVKGAFTGADKDKEGLIEKADG 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 107 GTLFLDElatapmlV-------QEKLLRVIEYGELERVGGS-QPLQVNVRLVCATNADLprmveEGHFRADLLDRLAFdV 178
Cdd:COG1221 210 GILFLDE-------VhrlppegQEMLFTFMDKGIYRRLGETeKTRKANVRIIFATTEDP-----ESSLLKTFLRRIPM-V 276
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 289779299 179 VQLPPLRER-QSDIMLLANQFAIQMCRELGLPLFpgFSERATATLLGYRWPGNIRELKNVV 238
Cdd:COG1221 277 IKLPSLEERsLEERLELIKHFFKEEAKRLNKPIK--VSKEVLKALLLYDCPGNIGQLKSDI 335
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
18-240 |
4.20e-31 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 122.63 E-value: 4.20e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 18 NSFLEVLEQV---SRlapldKPVLVIGERGTGKELIANRLHYLS-SRWQ--GPFISLNCAAL-NDNLLdSELFGHEAGAF 90
Cdd:COG4650 194 NRLIEQIERVairSR-----APILLTGPTGAGKSQLARRIYELKkARHQvsGRFVEVNCATLrGDGAM-SALFGHVKGAF 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 91 TGASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVEEGHFRADL 170
Cdd:COG4650 268 TGAVSDRAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 171 LDRLAFDVVQLPPLRERQSDI-----MLLAnQFAiqmcRELGLPlfPGFSERATATLLGY------RWPGNIRELKNVVE 239
Cdd:COG4650 348 LARINLWTFRLPGLAERREDIepnldYELA-RFA----REQGRR--VRFNKEARARYLAFatspeaLWSGNFRDLNASVT 420
|
.
gi 289779299 240 R 240
Cdd:COG4650 421 R 421
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
22-183 |
4.51e-22 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 90.67 E-value: 4.51e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 22 EVLEQVSRLAPLD--KPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEagaftgASKRHPG 99
Cdd:cd00009 5 EAIEALREALELPppKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVRLLFE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 100 RFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGsqplqVNVRLVCATNADLPrmveeGHFRADLLDRLaFDVV 179
Cdd:cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDR-----ENVRVIGATNRPLL-----GDLDRALYDRL-DIRI 147
|
....
gi 289779299 180 QLPP 183
Cdd:cd00009 148 VIPL 151
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
14-184 |
2.62e-18 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 80.08 E-value: 2.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 14 LGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFislNCAALNDNLLDSelfgheagaftga 93
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPF---DIEYLAHAPLEL------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 94 skrhpgrFERADGGTLFLDELATAPMLVQEKLLRVIEYGElervggsqplQVNVRLVCATNADLPRMVEEGHFRADLLDR 173
Cdd:pfam14532 65 -------LEQAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
gi 289779299 174 LAFDVVQLPPL 184
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
35-185 |
2.79e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.77 E-value: 2.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 35 KPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFTGASKRHPGR--FERA---DGGTL 109
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRlaLALArklKPDVL 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 289779299 110 FLDELATAPMLVQEKLLRVIeygELERVGGSQPLQVNVRLVCATNadlprmvEEGHFRADLLDRLAFDVVQLPPLR 185
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLL---EELRLLLLLKSEKNLTVILTTN-------DEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
36-174 |
3.35e-07 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 48.83 E-value: 3.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 36 PVLVIGERGTGKELIANRLHYLSSRWqgpfiSLNCAALNDNLLDSELFGHEAGAfTGASKRHPGRFERA--DGGTLFLDE 113
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAALSNR-----PVFYVQLTRDTTEEDLFGRRNID-PGGASWVDGPLVRAarEGEIAVLDE 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 289779299 114 LATAPMLVQEKLLRVIEYGELERVGGSQPLQV---NVRLVCATNaDLPRMVEEGhfRADLLDRL 174
Cdd:pfam07728 75 INRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMN-PLDRGLNEL--SPALRSRF 135
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
291-326 |
1.99e-04 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 38.14 E-value: 1.99e-04
10 20 30
....*....|....*....|....*....|....*.
gi 289779299 291 EKRLLQRSLQQAKYHQKQAAELLGLTYHQLRALLKK 326
Cdd:pfam02954 5 EKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
37-184 |
6.14e-04 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 39.11 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289779299 37 VLVIGERGTGKELIAnrlHYLSSRWQGPFISLNCAALNDNLLDsELFGHEAGAFTGASKRHPgrferadgGTLFLDEL-- 114
Cdd:pfam00004 1 LLLYGPPGTGKTTLA---KAVAKELGAPFIEISGSELVSKYVG-ESEKRLRELFEAAKKLAP--------CVIFIDEIda 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 289779299 115 ---------ATAPMLVQEKLLRVIEygelervgGSQPLQVNVRLVCATNadLPRMVEEghfraDLLDRlaFDVVQLPPL 184
Cdd:pfam00004 69 lagsrgsggDSESRRVVNQLLTELD--------GFTSSNSKVIVIAATN--RPDKLDP-----ALLGR--FDRIIEFPL 130
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
291-329 |
5.80e-03 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 35.17 E-value: 5.80e-03
10 20 30
....*....|....*....|....*....|....*....
gi 289779299 291 EKRLLQRSLQQAKYHQKQAAELLGLTYHQLRALLKKHQL 329
Cdd:COG2901 44 EKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYGL 82
|
|
| |
