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Conserved domains on  [gi|289779295|gb|EFD87292|]
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phage shock protein PspD [Klebsiella variicola]

Protein Classification

phage shock protein PspD( domain architecture ID 10013542)

phage shock protein PspD is part of the phage shock protein (psp) operon (pspABCDE) that may play a significant role in the competition for survival under nutrient- or energy-limited conditions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10497 PRK10497
phage shock protein PspD;
1-72 2.91e-28

phage shock protein PspD;


:

Pssm-ID: 182498  Cd Length: 73  Bit Score: 95.96  E-value: 2.91e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 289779295  1 MNSKWQRAGQQVKPGLKIVGKLALLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPLLSRLANRVTRGMK 72
Cdd:PRK10497  1 MNTRWQRAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAVKSVARKPLKMLLAVALEPLLKRAANKVSQRYK 72
 
Name Accession Description Interval E-value
PRK10497 PRK10497
phage shock protein PspD;
1-72 2.91e-28

phage shock protein PspD;


Pssm-ID: 182498  Cd Length: 73  Bit Score: 95.96  E-value: 2.91e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 289779295  1 MNSKWQRAGQQVKPGLKIVGKLALLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPLLSRLANRVTRGMK 72
Cdd:PRK10497  1 MNTRWQRAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAVKSVARKPLKMLLAVALEPLLKRAANKVSQRYK 72
Phageshock_PspD pfam09584
Phage shock protein PspD (Phageshock_PspD); Members of this family are phage shock protein ...
 11-71 3.49e-28

Phage shock protein PspD (Phageshock_PspD); Members of this family are phage shock protein PspD, found in a minority of bacteria that carry the defining genes of the phage shock regulon (pspA, pspB, pspC, and pspF). It is found in Escherichia coli, Yersinia pestis, and closely related species, where it is part of the phage shock operon. It is known to be expressed but its function is unknown.


Pssm-ID: 430699  Cd Length: 61  Bit Score: 95.44  E-value: 3.49e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 289779295  11 QVKPGLKIVGKLALLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPLLSRLANRVTRGM 71
Cdd:pfam09584  1 KVKPGIKIAGKLVLLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPALRRVANRIARRF 61
phageshock_pspD TIGR02979
phage shock protein PspD; Members of this family are phage shock protein PspD, found in a ...
 13-69 3.20e-20

phage shock protein PspD; Members of this family are phage shock protein PspD, found in a minority of bacteria that carry the defining genes of the phage shock regulon (pspA, pspB, pspC, and pspF). It is found in Escherichia coli, Yersinia pestis, and closely related species, where it is part of the phage shock operon. It is known to be expressed but its function is unknown. [Cellular processes, Adaptations to atypical conditions]


Pssm-ID: 132024  Cd Length: 59  Bit Score: 75.34  E-value: 3.20e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 289779295  13 KPGLKIVGKLALLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPLLSRLANRVTR 69
Cdd:TIGR02979  1 KPGFKLAGKLVLLTALRYGPAGVAGWAMKSVARRPLKMLLAIALEPMLKRAANKVAS 57
 
Name Accession Description Interval E-value
PRK10497 PRK10497
phage shock protein PspD;
1-72 2.91e-28

phage shock protein PspD;


Pssm-ID: 182498  Cd Length: 73  Bit Score: 95.96  E-value: 2.91e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 289779295  1 MNSKWQRAGQQVKPGLKIVGKLALLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPLLSRLANRVTRGMK 72
Cdd:PRK10497  1 MNTRWQRAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAVKSVARKPLKMLLAVALEPLLKRAANKVSQRYK 72
Phageshock_PspD pfam09584
Phage shock protein PspD (Phageshock_PspD); Members of this family are phage shock protein ...
 11-71 3.49e-28

Phage shock protein PspD (Phageshock_PspD); Members of this family are phage shock protein PspD, found in a minority of bacteria that carry the defining genes of the phage shock regulon (pspA, pspB, pspC, and pspF). It is found in Escherichia coli, Yersinia pestis, and closely related species, where it is part of the phage shock operon. It is known to be expressed but its function is unknown.


Pssm-ID: 430699  Cd Length: 61  Bit Score: 95.44  E-value: 3.49e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 289779295  11 QVKPGLKIVGKLALLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPLLSRLANRVTRGM 71
Cdd:pfam09584  1 KVKPGIKIAGKLVLLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPALRRVANRIARRF 61
phageshock_pspD TIGR02979
phage shock protein PspD; Members of this family are phage shock protein PspD, found in a ...
 13-69 3.20e-20

phage shock protein PspD; Members of this family are phage shock protein PspD, found in a minority of bacteria that carry the defining genes of the phage shock regulon (pspA, pspB, pspC, and pspF). It is found in Escherichia coli, Yersinia pestis, and closely related species, where it is part of the phage shock operon. It is known to be expressed but its function is unknown. [Cellular processes, Adaptations to atypical conditions]


Pssm-ID: 132024  Cd Length: 59  Bit Score: 75.34  E-value: 3.20e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 289779295  13 KPGLKIVGKLALLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPLLSRLANRVTR 69
Cdd:TIGR02979  1 KPGFKLAGKLVLLTALRYGPAGVAGWAMKSVARRPLKMLLAIALEPMLKRAANKVAS 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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