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Conserved domains on  [gi|282586577|gb|EFB91830|]
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ABC transporter, permease protein [Pyramidobacter piscolens W5455]

Protein Classification

methionine ABC transporter permease( domain architecture ID 10005172)

methionine ABC transporter permease is the transmembrane (TM) subunit of the ABC transporter complex, such as MetNPQ, that is involved in methionine import, and is responsible for the translocation of the substrate across the membrane

EC:  7.4.2.11
Gene Ontology:  GO:0033232|GO:0048473|GO:0042626
PubMed:  22095702|11421270|25750732|24638992
TCDB:  3.A.1.24

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 18-228 1.76e-66

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 441614  Cd Length: 220  Bit Score: 204.52  E-value: 1.76e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  18 FPNVILPAILDTLVMVVGSAVLAIFFGILLGVVLILTDKDGLSPHPVIYAVLGRLTDIVRSFPMMILIVAIAPLTRMVIG 97
Cdd:COG2011    8 LWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTRLIVG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  98 TKVGVRAAIFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVSNFTIMLINMLNTTAMA 177
Cdd:COG2011   88 TSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAMA 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 282586577 178 GAVGAGGLGAVALTYGYQRFDLVIMYFVVALLIVLVLVIQGFGNTLYRRVK 228
Cdd:COG2011  168 GAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLD 218
 
Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 18-228 1.76e-66

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 204.52  E-value: 1.76e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  18 FPNVILPAILDTLVMVVGSAVLAIFFGILLGVVLILTDKDGLSPHPVIYAVLGRLTDIVRSFPMMILIVAIAPLTRMVIG 97
Cdd:COG2011    8 LWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTRLIVG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  98 TKVGVRAAIFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVSNFTIMLINMLNTTAMA 177
Cdd:COG2011   88 TSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAMA 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 282586577 178 GAVGAGGLGAVALTYGYQRFDLVIMYFVVALLIVLVLVIQGFGNTLYRRVK 228
Cdd:COG2011  168 GAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLD 218
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
26-227 1.90e-33

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 119.84  E-value: 1.90e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  26 ILDTLVMVVGSAVLAIFFGILLGVVLILTDKDGLSPHPVIYAVLGRLTDIVRSFPMMILIVAIAPLTRMVIGTKVGVRAA 105
Cdd:PRK10782  13 VWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAA 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577 106 IFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVSNFTIMLINMLNTTAMAGAVGAGGL 185
Cdd:PRK10782  93 IVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGL 172

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 282586577 186 GAVALTYGYQRFDLVIMYFVVALLIVLVLVIQGFGNTLYRRV 227
Cdd:PRK10782 173 GQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAV 214
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 17-161 1.02e-11

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 62.56  E-value: 1.02e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577   17 YFPNvILPAILDTLVMVVGSAVLAIFFGILLGVVliltDKDGLSPHPVIYAVLGRLTDIVRSFPMMILiVAIapltrMVI 96
Cdd:TIGR01097  52 YLPR-ILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIPELVW-ALI-----FVA 120

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 282586577   97 GTKVGVRAAIFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVS 161
Cdd:TIGR01097 121 AVGLGPFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLS 185
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 26-175 9.56e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 58.83  E-value: 9.56e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  26 ILDTLVMVVGSAVLAIFFGILLGVVLiltdkdgLSPHPVIYAVLGRLTDIVRSFPMMILIVAIAPLTRMVIGTKVG---V 102
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIIL-------ARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglG 73

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 282586577 103 RAAIFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVSNFTIMLINMLNTTA 175
Cdd:cd06261   74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFA 146
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 44-176 6.70e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 50.76  E-value: 6.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577   44 GILLGVVLiltdkdGLSPHPVIYAVLGRLTDIVRSFPMMILIVAIAPLTRMVIgTKVGVRAAIFAITIGSTPFATRMTEN 123
Cdd:pfam00528   1 GIPLGIIA------ALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSI-LGHGILPAIILALLGWAGYARLIRRA 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 282586577  124 SLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVSNFTIMLINMLNTTAM 176
Cdd:pfam00528  74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVL 126
 
Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 18-228 1.76e-66

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 204.52  E-value: 1.76e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  18 FPNVILPAILDTLVMVVGSAVLAIFFGILLGVVLILTDKDGLSPHPVIYAVLGRLTDIVRSFPMMILIVAIAPLTRMVIG 97
Cdd:COG2011    8 LWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTRLIVG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  98 TKVGVRAAIFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVSNFTIMLINMLNTTAMA 177
Cdd:COG2011   88 TSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAMA 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 282586577 178 GAVGAGGLGAVALTYGYQRFDLVIMYFVVALLIVLVLVIQGFGNTLYRRVK 228
Cdd:COG2011  168 GAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLD 218
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
26-227 1.90e-33

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 119.84  E-value: 1.90e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  26 ILDTLVMVVGSAVLAIFFGILLGVVLILTDKDGLSPHPVIYAVLGRLTDIVRSFPMMILIVAIAPLTRMVIGTKVGVRAA 105
Cdd:PRK10782  13 VWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAA 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577 106 IFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVSNFTIMLINMLNTTAMAGAVGAGGL 185
Cdd:PRK10782  93 IVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGL 172

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 282586577 186 GAVALTYGYQRFDLVIMYFVVALLIVLVLVIQGFGNTLYRRV 227
Cdd:PRK10782 173 GQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAV 214
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 22-161 1.86e-14

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 70.11  E-value: 1.86e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  22 ILPAILDTLVMvvgsAVLAIFFGILLGVVLILTDKDGLSPHPVIYAVLGRLTDIVRSFPMmiLIVAIApltrMVIGTKVG 101
Cdd:COG3639   49 LLSALLETLAI----ALLGTLLGAVLALPLAFLAARNLAPNPWVRLLARRLLNVLRAIPE--LVWALI----FVAAVGLG 118

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577 102 VRAAIFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVS 161
Cdd:COG3639  119 PFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLS 178
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 22-161 8.08e-13

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 65.55  E-value: 8.08e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  22 ILPAILDTLVMVVGSAVLAIFFGILLGVVLiltdkdGLSPhpVIYAVLGRLTDIVRSFPmmilIVAIAPLTRMVIGTkvG 101
Cdd:COG0600   59 LWEHLLASLLRVLLGFALAALLGVPLGLLL------GLSR--LLRRLLDPLLVFLRPIP----PLALAPLLILWFGI--G 124

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577 102 VRAAIFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVS 161
Cdd:COG0600  125 EASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFT 184
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 17-161 1.02e-11

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 62.56  E-value: 1.02e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577   17 YFPNvILPAILDTLVMVVGSAVLAIFFGILLGVVliltDKDGLSPHPVIYAVLGRLTDIVRSFPMMILiVAIapltrMVI 96
Cdd:TIGR01097  52 YLPR-ILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIPELVW-ALI-----FVA 120

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 282586577   97 GTKVGVRAAIFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVS 161
Cdd:TIGR01097 121 AVGLGPFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLS 185
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 29-171 2.89e-11

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 61.28  E-value: 2.89e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  29 TLVMVVGSAVLAIFFGILLGVVLiltdkdGLSPhPVIYAVLGRLTDIVRSFPMMILIVAIApltrMVIGTkvGVRAAIFA 108
Cdd:COG1173   81 SLLVGLLAVLIALVIGVLLGLLA------GYFG-GWVDAVLMRLVDVLLAFPSLLLAIALV----AVLGP--GLLNVILA 147

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 282586577 109 ITIGSTPFATRMTEN---SLRTVDpkLVKAAKAFGASKLQIIFKVMMVEALPSLVSNFTIMLINML 171
Cdd:COG1173  148 LGLTGWPGYARLVRAqvlSLRERE--YVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAI 211
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 26-175 9.56e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 58.83  E-value: 9.56e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  26 ILDTLVMVVGSAVLAIFFGILLGVVLiltdkdgLSPHPVIYAVLGRLTDIVRSFPMMILIVAIAPLTRMVIGTKVG---V 102
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIIL-------ARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglG 73

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 282586577 103 RAAIFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVSNFTIMLINMLNTTA 175
Cdd:cd06261   74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFA 146
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 44-176 6.70e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 50.76  E-value: 6.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577   44 GILLGVVLiltdkdGLSPHPVIYAVLGRLTDIVRSFPMMILIVAIAPLTRMVIgTKVGVRAAIFAITIGSTPFATRMTEN 123
Cdd:pfam00528   1 GIPLGIIA------ALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSI-LGHGILPAIILALLGWAGYARLIRRA 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 282586577  124 SLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVSNFTIMLINMLNTTAM 176
Cdd:pfam00528  74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVL 126
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 14-167 8.85e-07

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 48.15  E-value: 8.85e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  14 LVRYFPnVILPAILDTLVMVVGSAVLAIFFGILLGVVLiltdkdgLSPHPVIYAVLGRLTDIVRSFPMMILIVAI---AP 90
Cdd:COG0765    8 LLDYLP-LLLEGLLVTLLLTVLAIVLGLVLGLLLALAR-------LSPNPVLRWLATAYVEFFRGTPLLVQLFFIyfgLP 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  91 LTRMVIGtkvGVRAAIFAITIGStpfATRMTEN---SLRTVDPKLVKAAKAFGASKLQIIFKV----MMVEALPSLVSNF 163
Cdd:COG0765   80 LLGIDLS---PFVAAVIALTLNS---AAYLAEIvraGIQSVPKGQWEAARALGLSRWQTMRRIilpqALRIILPPLGNEF 153


                 ....
gi 282586577 164 TIML 167
Cdd:COG0765  154 ISLL 157
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 22-165 1.80e-06

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 47.44  E-value: 1.80e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  22 ILPAILDTLVMVVGSAVLAIFFGILLGVVLILTDKDGlsphpviYAVLGRLTDIVRSFP-----MMILIV---------A 87
Cdd:COG0555   52 VLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPG-------KRLVDALVDLPFALPtavagIALLLLfgpngwlgqL 124

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 282586577  88 IAPLTRMVIGTKVGVraaIFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVSNFTI 165
Cdd:COG0555  125 LAPLGIKVAFTPLGI---VLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFAL 199
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 25-172 3.88e-06

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 46.54  E-value: 3.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  25 AILDTLVMVVGSAVLAIFFGILLGVVLILTdkdglsPHPVIYAVlGRLTDIVRSFPMMILIVAI-----------APLTR 93
Cdd:PRK15050  74 ALLTTLQIAFASTAGCLVLGVLLALVLAFV------PFPGASLV-GRFIDTFVAFPSFLITLAFtflygsagsvnIALQR 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  94 MV---------IGTKVGVraaIFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVSNFT 164
Cdd:PRK15050 147 LFgleappldfLYSPGGV---ILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGS 223


                 ....*...
gi 282586577 165 IMLINMLN 172
Cdd:PRK15050 224 LCLLLTLN 231
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 22-161 3.37e-05

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 43.56  E-value: 3.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  22 ILPAILDTLVMVVGSAVLAIFFGILLGVVLILTDKDGLSphpVIYAVLgrltdivrSFPMMI--LIVAIAPLtrmVIGTK 99
Cdd:COG1177   59 LLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRR---LLLALL--------LLPLVVpgIVLGVALL---LLFSA 124

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 282586577 100 VGVRAAIFAITIG----STPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVS 161
Cdd:COG1177  125 LGLSGGLWGLILAhvvfTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILA 190
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
21-161 3.63e-05

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 44.00  E-value: 3.63e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  21 VILPAILDTLVMVVGSAVLAIFFGILLGVVLILTDKDGlsphpviyavlGRLTDIVRSFPMMI--LIVAIA--------- 89
Cdd:COG1178   51 YLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPG-----------RRLLRWLLLLPLALppYVVALAwialfgpng 119

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 282586577  90 ---PLTRMVIGTKV----GVRAAIFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVS 161
Cdd:COG1178  120 llnTLLRALFGLEPpdiyGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAA 198
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
18-173 9.66e-05

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 42.84  E-value: 9.66e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  18 FPNVILPAILDTLVMVVGSAVLAIFFGILLGVVLILTDKdglsphpviyaVLGRLTDIVRSFPMMI---------LIVAI 88
Cdd:COG1178  332 LDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRG-----------RLARLLDRLAMLPYAVpgivlglglLLLFN 400

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  89 APLTRMVIGTKVGVraaIFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVSNFTIMLI 168
Cdd:COG1178  401 RPLPLLLYGTLAIL---VLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFV 477


                 ....*
gi 282586577 169 NMLNT 173
Cdd:COG1178  478 TSMKE 482
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
29-167 1.96e-04

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 41.62  E-value: 1.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  29 TLVMVVGSAVLAIFFGILLGVVLILTDKDGLSPHPviyavlgrLTDIVRSFPMMILIVAIAPLtrMVIGTKVGVRAAIfa 108
Cdd:PRK10952 149 TLALVLTALLFCIVIGLPLGIWLARSPRAAKIIRP--------LLDAMQTTPAFVYLVPIVML--FGIGNVPGVVVTI-- 216

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 282586577 109 itIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVS--NFTIML 167
Cdd:PRK10952 217 --IFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAgvNQTLML 275
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
30-160 7.71e-04

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 39.80  E-value: 7.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  30 LVMVVGSAVLAIFFGILLGVVLILTDkdglsphpviyAVLGRLTDIVRSFPMMILIVAIAPltrmVIGTKVgvRAAIFAI 109
Cdd:PRK09881 101 LVVVAIAGMIGSLLGCLSGVLGGRAD-----------AIIMRIMDIMLSIPSLVLTMALAA----ALGPSL--FNAMLAI 163

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 282586577 110 TIGSTPFATRMTENSLRTVDPK-LVKAAKAFGASKLQIIFKVMMVEALPSLV 160
Cdd:PRK09881 164 AIVRIPFYVRLARGQALVVRQYtYVQAAKTFGASRWHLISWHILRNSLPPLI 215
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 12-181 2.34e-03

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 37.73  E-value: 2.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  12 SNLVRYFPN---VILPAILDTLVMVVGSAVLAIFFGILLGVVLiltdkdglSPHPVIYAVLGRLTDIVRSFPMMILIVAI 88
Cdd:COG1174    3 LSLIEWLADnrdGILALLLEHLLLVLLALLIALLIAVPLGILI--------TRRRRLAGLVLGVANILQTIPSLALLALL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 282586577  89 APLTRmvigtkVGVRAAIFAITIGSTPFATRMTENSLRTVDPKLVKAAKAFGASKLQIIFKVMMVEALPSLVSNFTIMLI 168
Cdd:COG1174   75 IPLLG------IGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAV 148

                        170
                 ....*....|...
gi 282586577 169 NMLNTTAMAGAVG 181
Cdd:COG1174  149 QNIGTATLAALIG 161
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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