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Conserved domains on  [gi|223542757|gb|EEF44294|]
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conserved hypothetical protein [Ricinus communis]

Protein Classification

self-incompatibility S1 family protein( domain architecture ID 10531847)

self-incompatibility S1 family protein belongs to the large SPH (self-incompatibility protein homologue) protein family, small, disulfide-bonded, secreted proteins which are part of the self-incompatibility response system in plant

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Self-incomp_S1 pfam05938
Plant self-incompatibility protein S1; This family consists of a series of plant proteins ...
 32-120 1.61e-31

Plant self-incompatibility protein S1; This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties.


:

Pssm-ID: 461784  Cd Length: 89  Bit Score: 111.18  E-value: 1.61e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223542757   32 TVKVTNGIGPGLDLTVHCKSKDDDLGTKVLPYNGYFSFRFHPNFMDTTLYFCSMSWHGQSHKFDIYTEDRDKNKCpHDYC 111
Cdd:pfam05938   1 HVHIINELGNGKILKVHCKSKDDDLGVHVLKPGEEYSFSFRDNFFGTTLFFCHFRWGPYHQSFDVYRAKRDSNRC-GKLC 79


                  ....*....
gi 223542757  112 GWLVRPSGP 120
Cdd:pfam05938  80 IWIAREDGI 88
Self-incomp_S1 pfam05938
Plant self-incompatibility protein S1; This family consists of a series of plant proteins ...
 133-221 8.73e-31

Plant self-incompatibility protein S1; This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties.


:

Pssm-ID: 461784  Cd Length: 89  Bit Score: 109.26  E-value: 8.73e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223542757  133 TVIITNDLNQGLDLSVHCKSKEDDLGVHILPPHNNYQFEFQPNFWGVTQFFCGFTWKKTGiHWFDIYIQNRDYPKC-STC 211
Cdd:pfam05938   1 HVHIINELGNGKILKVHCKSKDDDLGVHVLKPGEEYSFSFRDNFFGTTLFFCHFRWGPYH-QSFDVYRAKRDSNRCgKLC 79

                          90
                  ....*....|
gi 223542757  212 KWVLRQKGPC 221
Cdd:pfam05938  80 IWIAREDGIY 89
 
Name Accession Description Interval E-value
Self-incomp_S1 pfam05938
Plant self-incompatibility protein S1; This family consists of a series of plant proteins ...
 32-120 1.61e-31

Plant self-incompatibility protein S1; This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties.


Pssm-ID: 461784  Cd Length: 89  Bit Score: 111.18  E-value: 1.61e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223542757   32 TVKVTNGIGPGLDLTVHCKSKDDDLGTKVLPYNGYFSFRFHPNFMDTTLYFCSMSWHGQSHKFDIYTEDRDKNKCpHDYC 111
Cdd:pfam05938   1 HVHIINELGNGKILKVHCKSKDDDLGVHVLKPGEEYSFSFRDNFFGTTLFFCHFRWGPYHQSFDVYRAKRDSNRC-GKLC 79


                  ....*....
gi 223542757  112 GWLVRPSGP 120
Cdd:pfam05938  80 IWIAREDGI 88
Self-incomp_S1 pfam05938
Plant self-incompatibility protein S1; This family consists of a series of plant proteins ...
 133-221 8.73e-31

Plant self-incompatibility protein S1; This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties.


Pssm-ID: 461784  Cd Length: 89  Bit Score: 109.26  E-value: 8.73e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223542757  133 TVIITNDLNQGLDLSVHCKSKEDDLGVHILPPHNNYQFEFQPNFWGVTQFFCGFTWKKTGiHWFDIYIQNRDYPKC-STC 211
Cdd:pfam05938   1 HVHIINELGNGKILKVHCKSKDDDLGVHVLKPGEEYSFSFRDNFFGTTLFFCHFRWGPYH-QSFDVYRAKRDSNRCgKLC 79

                          90
                  ....*....|
gi 223542757  212 KWVLRQKGPC 221
Cdd:pfam05938  80 IWIAREDGIY 89
 
Name Accession Description Interval E-value
Self-incomp_S1 pfam05938
Plant self-incompatibility protein S1; This family consists of a series of plant proteins ...
 32-120 1.61e-31

Plant self-incompatibility protein S1; This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties.


Pssm-ID: 461784  Cd Length: 89  Bit Score: 111.18  E-value: 1.61e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223542757   32 TVKVTNGIGPGLDLTVHCKSKDDDLGTKVLPYNGYFSFRFHPNFMDTTLYFCSMSWHGQSHKFDIYTEDRDKNKCpHDYC 111
Cdd:pfam05938   1 HVHIINELGNGKILKVHCKSKDDDLGVHVLKPGEEYSFSFRDNFFGTTLFFCHFRWGPYHQSFDVYRAKRDSNRC-GKLC 79


                  ....*....
gi 223542757  112 GWLVRPSGP 120
Cdd:pfam05938  80 IWIAREDGI 88
Self-incomp_S1 pfam05938
Plant self-incompatibility protein S1; This family consists of a series of plant proteins ...
 133-221 8.73e-31

Plant self-incompatibility protein S1; This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties.


Pssm-ID: 461784  Cd Length: 89  Bit Score: 109.26  E-value: 8.73e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223542757  133 TVIITNDLNQGLDLSVHCKSKEDDLGVHILPPHNNYQFEFQPNFWGVTQFFCGFTWKKTGiHWFDIYIQNRDYPKC-STC 211
Cdd:pfam05938   1 HVHIINELGNGKILKVHCKSKDDDLGVHVLKPGEEYSFSFRDNFFGTTLFFCHFRWGPYH-QSFDVYRAKRDSNRCgKLC 79

                          90
                  ....*....|
gi 223542757  212 KWVLRQKGPC 221
Cdd:pfam05938  80 IWIAREDGIY 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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