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Conserved domains on  [gi|190409298|gb|EDV12563|]
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protein COS1 [Saccharomyces cerevisiae RM11-1a]

Protein Classification

DUP/COS family protein( domain architecture ID 10463797)

DUP/COS family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 262-351 2.28e-29

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


:

Pssm-ID: 395546  Cd Length: 96  Bit Score: 108.92  E-value: 2.28e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190409298  262 LYLGWILFILVQ-GFQNIR--VLIMSMEH-KMQFLSTIINEQE-SGANGWDEIARKMNRYLFEKKVWKNEEFFFDGIDCE 336
Cdd:pfam00674   2 LVLVLIILLLICiVFPNIRmfGSSVSDEHfKMQLLSEIITRKPaVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQ 81

                          90
                  ....*....|....*
gi 190409298  337 WFFSHFFYRVLSAKK 351
Cdd:pfam00674  82 EFFRRLILGPLSSKK 96
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 73-167 2.33e-27

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


:

Pssm-ID: 395546  Cd Length: 96  Bit Score: 103.91  E-value: 2.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190409298   73 LIVSLLVLFLGPIFVLVICGLSRKRSLSKQLIQFCKEVTENTPSSDPHDWEVVAANLNSYLYENKAWNTRYFFFNAMGCQ 152
Cdd:pfam00674   2 LVLVLIILLLICIVFPNIRMFGSSVSDEHFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQ 81

                          90
                  ....*....|....*
gi 190409298  153 EAFRTTLLEPFSLKK 167
Cdd:pfam00674  82 EFFRRLILGPLSSKK 96
 
Name Accession Description Interval E-value
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 262-351 2.28e-29

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


Pssm-ID: 395546  Cd Length: 96  Bit Score: 108.92  E-value: 2.28e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190409298  262 LYLGWILFILVQ-GFQNIR--VLIMSMEH-KMQFLSTIINEQE-SGANGWDEIARKMNRYLFEKKVWKNEEFFFDGIDCE 336
Cdd:pfam00674   2 LVLVLIILLLICiVFPNIRmfGSSVSDEHfKMQLLSEIITRKPaVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQ 81

                          90
                  ....*....|....*
gi 190409298  337 WFFSHFFYRVLSAKK 351
Cdd:pfam00674  82 EFFRRLILGPLSSKK 96
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 73-167 2.33e-27

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


Pssm-ID: 395546  Cd Length: 96  Bit Score: 103.91  E-value: 2.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190409298   73 LIVSLLVLFLGPIFVLVICGLSRKRSLSKQLIQFCKEVTENTPSSDPHDWEVVAANLNSYLYENKAWNTRYFFFNAMGCQ 152
Cdd:pfam00674   2 LVLVLIILLLICIVFPNIRMFGSSVSDEHFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQ 81

                          90
                  ....*....|....*
gi 190409298  153 EAFRTTLLEPFSLKK 167
Cdd:pfam00674  82 EFFRRLILGPLSSKK 96
 
Name Accession Description Interval E-value
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 262-351 2.28e-29

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


Pssm-ID: 395546  Cd Length: 96  Bit Score: 108.92  E-value: 2.28e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190409298  262 LYLGWILFILVQ-GFQNIR--VLIMSMEH-KMQFLSTIINEQE-SGANGWDEIARKMNRYLFEKKVWKNEEFFFDGIDCE 336
Cdd:pfam00674   2 LVLVLIILLLICiVFPNIRmfGSSVSDEHfKMQLLSEIITRKPaVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQ 81

                          90
                  ....*....|....*
gi 190409298  337 WFFSHFFYRVLSAKK 351
Cdd:pfam00674  82 EFFRRLILGPLSSKK 96
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 73-167 2.33e-27

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


Pssm-ID: 395546  Cd Length: 96  Bit Score: 103.91  E-value: 2.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190409298   73 LIVSLLVLFLGPIFVLVICGLSRKRSLSKQLIQFCKEVTENTPSSDPHDWEVVAANLNSYLYENKAWNTRYFFFNAMGCQ 152
Cdd:pfam00674   2 LVLVLIILLLICIVFPNIRMFGSSVSDEHFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQ 81

                          90
                  ....*....|....*
gi 190409298  153 EAFRTTLLEPFSLKK 167
Cdd:pfam00674  82 EFFRRLILGPLSSKK 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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