|
Name |
Accession |
Description |
Interval |
E-value |
| urea_ABC_UrtA |
TIGR03407 |
urea ABC transporter, urea binding protein; Members of this protein family are ABC transporter ... |
31-404 |
0e+00 |
|
urea ABC transporter, urea binding protein; Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 132448 [Multi-domain] Cd Length: 359 Bit Score: 647.48 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 31 IKVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVS 110
Cdd:TIGR03407 1 IKVGILHSLSGTMAISETTLKDAELMAIEEINASGGVLGKKIEPVVEDGASDWPTFAEKARKLITQDKVAAVFGCWTSAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 111 RKSVLPVFEELNGLLFYPVQYEGEEMSPNVFYTGAAPNQQAIPAVEYLMSEDGGsaKRFFLLGTDYVYPRTTNKILRAFL 190
Cdd:TIGR03407 81 RKAVLPVFEENNGLLFYPVQYEGEECSPNIFYTGAAPNQQIIPAVDYLLSKKGA--KRFFLLGSDYVFPRTANKIIKAYL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 191 HSKGveDKDIEEVYTPFGHSDYQTIVASIKKFSAGgktAVVSTINGDSNVPFYKELANQGLKATDVPVVAFSVGEEELRG 270
Cdd:TIGR03407 159 KSLG--GTVVGEDYTPLGHTDFQTIINKIKAFKPD---VVFNTLNGDSNVAFFKQLKNAGITAKDVPVVSFSVAEEEIRG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 271 IDTKPLVGNLAAWNYFESVDNPTNQTFVaaykayaKAHKLPNADTVVTNDPMEATYVGLHMWAQAVEKAGTTDVDKVRAA 350
Cdd:TIGR03407 234 IGPENLVGHLAAWNYFQSVDTPANKKFV-------KAFKAKYGDDRVTNDPMEAAYLGVYLWKAAVEKAGSFDVDAVRDA 306
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1017593251 351 MAGQSFNAPSGfTLTMDATNHHLHKPVMIGEIEGNGQFNVVWQTEQPVRAQPWS 404
Cdd:TIGR03407 307 AIGIEFDAPEG-KVKVDGKNHHLTKTVRIGEIRADGQFDVVWESDGPVEPDPWS 359
|
|
| Peripla_BP_5 |
pfam13433 |
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic ... |
31-407 |
0e+00 |
|
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic binding proteins.
Pssm-ID: 463875 [Multi-domain] Cd Length: 363 Bit Score: 631.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 31 IKVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVS 110
Cdd:pfam13433 1 IKVGVLHSLTGTMAISERSLKDATLMAIEEINAAGGVLGRKIEPVVVDPASDWPLFAEKARKLIDQDKVRVVFGCWTSAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 111 RKSVLPVFEELNGLLFYPVQYEGEEMSPNVFYTGAAPNQQAIPAVEYLMSEDGgsaKRFFLLGTDYVYPRTTNKILRAFL 190
Cdd:pfam13433 81 RKAVLPVFERHNGLLFYPVQYEGFESSRNIFYTGAAPNQQAIPAVDYLLSELG---KRFFLVGSDYVYPRTTNRILRAYL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 191 HSKGVEdkDIEEVYTPFGHSDYQTIVASIKKFsagGKTAVVSTINGDSNVPFYKELANQGLKATDVPVVAFSVGEEELRG 270
Cdd:pfam13433 158 KAKGGE--VVGERYLPLGSSDWQSIVAKIKAA---GPDVVFSTINGDSNVAFYRALRAAGITAEDIPVMSFSVAEEELAG 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 271 IDTKPLVGNLAAWNYFESVDNPTNQTFVAAYKAYAKAHKlpnadtvVTNDPMEATYVGLHMWAQAVEKAGTTDVDKVRAA 350
Cdd:pfam13433 233 MGPEPLVGHLAAWNYFQSLDTPENKAFVAAFKARYGDDR-------VTNDPMEAAYIGVHLWAQAVEKAGTDDPDAVRQA 305
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1017593251 351 MAGQSFNAPSGFtLTMDATNHHLHKPVMIGEIEGNGQFNVVWQTEQPVRAQPWSPFI 407
Cdd:pfam13433 306 MLGQEFDAPQGP-VKIDPENHHTWKPVRIGRIRADGQFDIVWETDGPVRPDPWSVYL 361
|
|
| PBP1_FmdD-like |
cd06355 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
32-394 |
0e+00 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type 1 periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380578 [Multi-domain] Cd Length: 347 Bit Score: 585.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd06355 1 KVGILHSLSGTMAISERPLVDATLLAIDEINAAGGLLGRKIEPVIEDGASDWPTFAEKAEKLITQDKVAVIFGCWTSASR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNGLLFYPVQYEGEEMSPNVFYTGAAPNQQAIPAVEYLMSEDGgsaKRFFLLGTDYVYPRTTNKILRAFLH 191
Cdd:cd06355 81 KAVLPVIEKYNGLLFYPVQYEGLEQSPNIVYTGATPNQQILPAIDWLLENLG---KRFFLVGSDYVFPRTANKIIRDQLK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 192 SKGVEdkDIEEVYTPFGHSDYQTIVASIKKFSAggkTAVVSTINGDSNVPFYKELANQGLKATDVPVVAFSVGEEELRGI 271
Cdd:cd06355 158 ALGGE--VVGEEYVPLGGTDFDAIVAKIKAFKP---DVIVNTLNGDSNIAFFKQLAAAGITASDLPVLSFSVSEAELRAI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 272 DTKPLVGNLAAWNYFESVDNPTNQTFVaaykayaKAHKLPNADTVVTNDPMEATYVGLHMWAQAVEKAGTTDVDKVRAAM 351
Cdd:cd06355 233 GPEELAGHYAAWNYFQSLDTPENQAFV-------EAFKAKYGADRVTSDPMEAAYLGVYLWAQAVEKAGSFDPDAVRAAL 305
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1017593251 352 AGQSFNAPSGFTlTMDATNHHLHKPVMIGEIEGNGQFNVVWQT 394
Cdd:cd06355 306 KGQSFEAPGGTV-TVDPENHHLWKPVRIGKVQADGQFDIVWSS 347
|
|
| PBP1_AmiC |
cd06357 |
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding ... |
32-403 |
1.72e-141 |
|
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family; This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Pssm-ID: 380580 [Multi-domain] Cd Length: 357 Bit Score: 407.73 E-value: 1.72e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd06357 1 RVGLLFSQTGVTAIIEQSMLNGALLAIEEINAAGGVNGRPIEPVVYDPASDPDRYRELAERLLLEDGVRHIFGCYTSASR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNGLLFYPVQYEGEEMSPNVFYTGAAPNQQAIPAVEYLMSEDGgsaKRFFLLGTDYVYPRTTNKILRAFLH 191
Cdd:cd06357 81 KAVLPVVERHNALLWYPTPYEGFEYSPNVIYTGAVPNQHLLPLARYLLAHFG---KRVFLVGSNYVYPWESNRVARELIE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 192 SKGveDKDIEEVYTPFGHSDYQTIVASIKkfsAGGKTAVVSTINGDSNVPFYKELANQGLKATDVPVVAFSVGEEELRGI 271
Cdd:cd06357 158 ASG--GEVVGERYVPLGDTDFAEIIEEIK---SLKPDVVFSTLVGDSIYAFYRAYAEAGLDPADMPIASLTTSEAEVAAI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 272 DTKPLVGNLAAWNYFESVDNPTNQTFVaaykayAKAHKLPNADTVVTNDpMEATYVGLHMWAQAVEKAGTTDVDKVRAAM 351
Cdd:cd06357 233 GAEAAAGHYTSAPYFQSIDTPENRAFV------EAYRARFGDDAVTSAV-AEAAYFQVHLLARAIERAGSDDPEAIRAAL 305
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1017593251 352 AGQSFNAPSGfTLTMDATNHHLHKPVMIGEIEGNGQFNVVWQTEQPVRAQPW 403
Cdd:cd06357 306 YGQEFDAPQG-PVRIDPDNNHTWLTPRIGRANADGQFDIVWESDEPVAPDPY 356
|
|
| PBP1_AmiC-like |
cd06331 |
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system ... |
32-380 |
2.41e-105 |
|
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF); This group includes the type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380554 [Multi-domain] Cd Length: 333 Bit Score: 314.93 E-value: 2.41e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd06331 1 KIGLLTPLSGPASVYGRAIANGAELAVEEINAAGGVLGRPVELVVEDDASDPATAVAAARRLIQQDKVDAIVGPITSATR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNGLLFYPVQYEGEEMSPNVFYTGAAPNQQAIPAVEYLMSEDGgsaKRFFLLGTDYVYPRTTNKILRAFLH 191
Cdd:cd06331 81 NAVAPVAERAKVPLLYPTFYEGGECSPYLFCFGEVPNQQLDPLIPWLMEEYG---KKFYLIGSDYVWPRTMNDAARRVIE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 192 SKGVEdkDIEEVYTPFGHSDYQTIVASIKkfSAGGKtAVVSTINGDSNVPFYKELANQGLKATdVPVVAFSVGEEELRGI 271
Cdd:cd06331 158 AHGGE--VVGEEYLPLGTTDFSSVIEKIK--ASGAD-VVLSTLVGADAVTFLKQFAAAGLRRK-VRIAALLFDENTLAGL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 272 DTKPLVGNLAAWNYFESVDNPTNQTFVaaykayAKAHKLPNADTVVTNDPMEATYVGLHMWAQAVEKAGTTDVDKVRAAM 351
Cdd:cd06331 232 GAEAAEGIYSVLSYFQSLDTPENKAFV------AAYRKKFGEDAPPITSLSEAAYEAVHLYAAAVEKAGSTDPEAVIAAL 305
|
330 340
....*....|....*....|....*....
gi 1017593251 352 AGQSFNAPSGfTLTMDATNHHLHKPVMIG 380
Cdd:cd06331 306 PGVSFDGPQG-PVTMDPDNHHVRLNLYIA 333
|
|
| LivK |
COG0683 |
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid ... |
28-393 |
2.40e-80 |
|
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism];
Pssm-ID: 440447 [Multi-domain] Cd Length: 314 Bit Score: 250.23 E-value: 2.40e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 28 AETIKVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWT 107
Cdd:COG0683 1 ADPIKIGVLLPLTGPYAALGQPIKNGAELAVEEINAAGGVLGRKIELVVEDDASDPDTAVAAARKLIDQDKVDAIVGPLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 108 SVSRKSVLPVFEELN----GLLFYPVQYEGEEMSPNVFYTGAAPNQQAIPAVEYLMSEDGgsAKRFFLLGTDYVYPRTTN 183
Cdd:COG0683 81 SGVALAVAPVAEEAGvpliSPSATAPALTGPECSPYVFRTAPSDAQQAEALADYLAKKLG--AKKVALLYDDYAYGQGLA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 184 KILRAFLHSKGVEDkdIEEVYTPFGHSDYQTIVASIKkfsAGGKTAVVSTINGDSNVPFYKELANQGLKAtdvpvvafsv 263
Cdd:COG0683 159 AAFKAALKAAGGEV--VGEEYYPPGTTDFSAQLTKIK---AAGPDAVFLAGYGGDAALFIKQAREAGLKG---------- 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 264 geeelrgidtkplvgnlaawnyfesvdnPTNQTFVAAYkayakaHKLPNADTvvtNDPMEATYVGLHMWAQAVEKAGTTD 343
Cdd:COG0683 224 ----------------------------PLNKAFVKAY------KAKYGREP---SSYAAAGYDAALLLAEAIEKAGSTD 266
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1017593251 344 VDKVRAAMAGQSFNAPSGfTLTMDAtNHHLHKPVMIGEIEGNGQFNVVWQ 393
Cdd:COG0683 267 REAVRDALEGLKFDGVTG-PITFDP-DGQGVQPVYIVQVKADGKFVVVET 314
|
|
| PBP1_amide_urea_BP-like |
cd06356 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
32-380 |
6.91e-80 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the type 1 periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Pssm-ID: 380579 [Multi-domain] Cd Length: 334 Bit Score: 249.91 E-value: 6.91e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd06356 1 KIGSIFDLSGGLNIYGKPMVHAMKLAVEEINAAGGLLGRQIELVAYDTQSDMQKYTQYAQQLILRDKVDVVFGGITSASR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNGLLFYPVQYEGEEMSPNVFYTGAAPNQQAIPAVEYLMSEDGgsaKRFFLLGTDYVYPRTTNKILRAFLH 191
Cdd:cd06356 81 EAIRPILRRNKILYFYNTQYEGGVCDKNTFCTGSTPEQQVSPLIEWAIKKYG---KKVYIIAADYNFGQISADWVKKYAK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 192 SKGVEDKDIEevYTPFGHSDYQtivASIKKFSAGGKTAVVSTINGDSNVPFYKELANQGLKATdVPVVA--FSVGEEELR 269
Cdd:cd06356 158 KNGGEVVGEE--FFPLDVTDFG---PTIQKIQAAKPDFVVSLLVGGNHISFYRQWAAAGLKKK-IPIVStvFGAGNEHKV 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 270 gIDTKPLVGNLAAWNYFESVDNPTNQTFVAAYKAyakahKLPNADTVvtNDPMEATYVGLHMWAQAVEKAGTTDVDKVRA 349
Cdd:cd06356 232 -LSPPELEGMYVSYSYFEELDTPANKAFVAKWRA-----KYGDEPYI--NQEAVGVYNAVYLWAEAVEKAGSTEREAVIA 303
|
330 340 350
....*....|....*....|....*....|..
gi 1017593251 350 AM-AGQSFNAPSGfTLTMDATNHHLHKPVMIG 380
Cdd:cd06356 304 ALeSGISFDGPSG-TVTVDPKSHHAIQNVYLA 334
|
|
| Peripla_BP_6 |
pfam13458 |
Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
30-387 |
2.61e-77 |
|
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins.
Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 243.33 E-value: 2.61e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 30 TIKVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSV 109
Cdd:pfam13458 1 PIKIGVLTPLSGPYASSGKSSRAGARAAIEEINAAGGVNGRKIELVVADDQGDPDVAAAAARRLVDQDGVDAIVGGVSSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 110 SRKSVLPVFEELNGLLFYPVQYEGEEMSPNVFYTGAAPNQQAIPAVEYLMSEDGGsaKRFFLLGTDYVYPRTTNKILRAF 189
Cdd:pfam13458 81 VALAVAEVLAKKGVPVIGPAALTGEKCSPYVFSLGPTYSAQATALGRYLAKELGG--KKVALIGADYAFGRALAAAAKAA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 190 LHSKGVEdkDIEEVYTPFGHSDYQTIVASIKkfsAGGKTAVVSTINGDSNVPFYKELANQGLKATDVPVVAFSVGEEELR 269
Cdd:pfam13458 159 AKAAGGE--VVGEVRYPLGTTDFSSQVLQIK---ASGADAVLLANAGADTVNLLKQAREAGLDAKGIKLVGLGGDEPDLK 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 270 GIDTKPLVGNLAAWNYFESVDNPTNQTFVAAYKAYakahklpnADTVVTNDPMEATYVGLHMWAQAVEKAGTTDVDKVRA 349
Cdd:pfam13458 234 ALGGDAAEGVYATVPFFPDLDNPATRAFVAAFAAK--------YGEAPPTQFAAGGYIAADLLLAALEAAGSPTREAVIA 305
|
330 340 350
....*....|....*....|....*....|....*...
gi 1017593251 350 AMAGQSFNAPSGfTLTMDATNHHLHKPVMIGEIEGNGQ 387
Cdd:pfam13458 306 ALRALPYDGPFG-PVGFRAEDHQAVHCMYLVQVKADGK 342
|
|
| PBP1_As_SBP-like |
cd06330 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
32-382 |
3.80e-50 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic (As) and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Pssm-ID: 380553 [Multi-domain] Cd Length: 342 Bit Score: 172.75 E-value: 3.80e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd06330 1 KIGVITPLSGAAAVYGEPARNGAELAVEEINAAGGILGRKIELVVRDDKGKPDEAVRAARELVLQEGVDFLIGTISSGVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNGLLFYPV----QYEGEEMSPNVFYTGAAPNQQAIPAVEYlMSEDGGSAKRFFLLGTDYVYPRTTNKILR 187
Cdd:cd06330 81 LAVAPVAEELKVLFIATDaatdRLTEENFNPYVFRTSPNTYMDAVAAALY-AAKKPPDVKRWAGIGPDYEYGRDSWAAFK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 188 AFLHSKGVEDKDIEEVYTPFGHSDYQTIVASIKkfsAGGKTAVVSTINGDSNVPFYKELANQGL-KATDVPVVAFSVGEE 266
Cdd:cd06330 160 AALKKLKPDVEVVGELWPKLGATDYTAYITALL---AAKPDGVFSSLWGGDLVTFVKQAKPYGLfDKTKVVSGLGGGSEV 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 267 ELRGIDTKPLVGNLAAWNYFESVDNPTNQTFVaaYKAYAKAHKLPnadtvvtNDPMEATYVGLHMWAQAVEKAGTTDVDK 346
Cdd:cd06330 237 LQALGKEMPEGLIGGGRYPFGWPDTPLNKAFV--EAYRAKYGEYP-------TYWAYEAYAAVMALKAAIEKAGSTDTDK 307
|
330 340 350
....*....|....*....|....*....|....*.
gi 1017593251 347 VRAAMAGQSFNAPSGfTLTMDATNHHLHKPVMIGEI 382
Cdd:cd06330 308 VIAALEGLTFDTPGG-KITIRAEDHQAVQPVVVGTT 342
|
|
| PBP1_NHase |
cd06358 |
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively ... |
32-381 |
1.65e-49 |
|
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides; This group includes the type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified into two subgroups: ferric NHases and cobalt NHases.
Pssm-ID: 380581 [Multi-domain] Cd Length: 333 Bit Score: 170.85 E-value: 1.65e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd06358 1 RIGLLIPLSGPAGLWGPSCEACAELAAAEINAAGGILGREVELVLIDAGGPPAEVAAAARRLVDDGAVDAIVGMHTSAVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVfeeLNGLL--FYPVQYEGEEMSPNVFYTGAAPNQQAIPAVEYLMSEDGgsAKRFFLLGTDYVYPRTTNKILRAF 189
Cdd:cd06358 81 QALANA---VGGRVpyVYTPLYEGGERTPGVYAIGETPEEQLRPALRWLADERR--VRRWFLVGNDYVWPRASHAAARRY 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 190 LHSKGVEdkdIE-EVYTPFGHSDYQTIVASIKkfsAGGKTAVVSTINGDSNVPFYKELANQGLkATDVPVVAFSVGEEEL 268
Cdd:cd06358 156 IARLGGE---VVgERFVPLGEDDFERVLARIR---ASRPDAVLISLVGQDAVDFNRAFAAAGL-AGRILRLSPAIDENVL 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 269 RGIDTKPLvGNL-AAWNYFESVDNPTNQTFVaaykayAKAHKLPNADTVVTNDPMEATYVGLHMWAQAVEKAGTTDVDKV 347
Cdd:cd06358 229 LAIGADAT-ENLySASGYFASLRTAANLAFL------ERYHAAFGDRAPPLNALGESCYEGVHFLAALARRAGSLDVRAL 301
|
330 340 350
....*....|....*....|....*....|....
gi 1017593251 348 RAAMAGQSFNAPSGFtltMDATNHHLHKPVMIGE 381
Cdd:cd06358 302 AAAAEGLTYESPRGA---VTLRGRHARQPVYLAR 332
|
|
| PBP1_SBP-like |
cd19989 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
32-336 |
3.83e-29 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380644 [Multi-domain] Cd Length: 299 Bit Score: 115.45 E-value: 3.83e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd19989 1 KIGVLTPLSGPYAALGEEARRGAQLAVEEINAAGGILGRPVELVVEDTEGKPATAVQKARKLVEQDGVDFLTGAVSSAVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNGLLFYPV-QYE---GEEMSPNVFYTGAAPNQQAIPAVEYLMSEDGgsaKRFFLLGTDYVYPRTTNKILR 187
Cdd:cd19989 81 LAVAPKAAELKVPYLVTVaADDeltGENCNRYTFRVNTSDRMIARALAPWLAENGG---KKWYIVYADYAWGQSSAEAFK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 188 AFLHSKGVEdkDIEEVYTPFGHSDYQTIVASIKKFSAGGktaVVSTINGDSNVPFYKELANQGLKAtDVPVVAFSVGEEE 267
Cdd:cd19989 158 EAIEELGGE--VVGTLFAPLGTTDFSSYITQISDSGADG---LLLALAGSDAVNFLKQAGQFGLGK-KYKIVGGILSIEP 231
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1017593251 268 LRGIDTKP-LVGNLAAWNYFESVDNPTNQTFVAAYKayakahklpNADTVVTNDPMEATYVGLHMWA-QAV 336
Cdd:cd19989 232 LALPALGDaAEGVYGGVRYPPTLDTPANRAFVEAYE---------KEYGEAPDNFAGEAYEAMQALAhQAV 293
|
|
| PBP1_ABC_ligand_binding-like |
cd19980 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
32-379 |
6.08e-29 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380635 [Multi-domain] Cd Length: 334 Bit Score: 115.40 E-value: 6.08e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNwPLFAEKARQLL-SQDKVAVVFGCWTSVS 110
Cdd:cd19980 1 KIGVIAPLSGPVAALGQQVLNGAKLAVEEINAKGGVLGRKLELVVEDDKCP-PAEGVAAAKKLiTDDKVPAIIGAWCSSV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 111 RKSVLPVFEElNGLLF------YPVQYEGEemSPNVFYTGAAPNQQAIPAVEYLmsEDGGSAKRFFLLGTDYVYPRTTNK 184
Cdd:cd19980 80 TLAVMPVAER-AKVPLvveissAPKITEGG--NPYVFRLNPTNSMLAKAFAKYL--ADKGKPKKVAFLAENDDYGRGAAE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 185 ILRAFLHSKGVedKDIEEVYTPFGHSDYQTIVASIKkfsAGGKTAVVSTINGDSNVPFYKELANQGLKAtdvPVVAF-SV 263
Cdd:cd19980 155 AFKKALKAKGV--KVVATEYFDQGQTDFTTQLTKLK---AANPDAIFVVAETEDGALILKQARELGLKQ---QLVGTgGT 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 264 GEEELRGIDTKPLVGNLAAWNYFESVDNPTNQTFVAAYKAyakahKLPNADTVVtndpMEATYVGLHMWAQAVEKAGTTD 343
Cdd:cd19980 227 TSPDLIKLAGDAAEGVYGASIYAPTADNPANKAFVAAYKK-----KYGEPPDKF----AALGYDAVMVIAEAIKKAGSTD 297
|
330 340 350
....*....|....*....|....*....|....*.
gi 1017593251 344 VDKVRAAMAGQSFNAPSGFTLTMDAtNHHLHKPVMI 379
Cdd:cd19980 298 PEKIRAAALKKVDYKGPGGTIKFDE-KGQAHKNVVL 332
|
|
| PBP1_aromatic_compounds-like |
cd06332 |
type 1 periplasmic binding proteins of active transport systems predicted to be involved in ... |
32-371 |
9.12e-28 |
|
type 1 periplasmic binding proteins of active transport systems predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; This group includes the type 1 periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Pssm-ID: 380555 [Multi-domain] Cd Length: 336 Bit Score: 112.31 E-value: 9.12e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKggVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd06332 1 KIGLLAPLTGPFAALGEDMVRGFELALEEVGGE--VAGRKVELVVEDDAGDPDTAVTKARKLVEQDKVDVLIGPLSGDEG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNGLLFYPV----QYEGEEMSPNVFYTGAAPNQQAIPAVEYLmSEDGGsAKRFFLLGTDYVYPRTtnkILR 187
Cdd:cd06332 79 LAVAPYAKEPGVPFINPVagadDLTQRAKAPNFFRTSFTGSQWSAPLGDYA-YKELG-YKKVATIGSDYAFGYE---QAA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 188 AFLhsKGVED---KDIEEVYTPFGHSDYQTIVASIKKfsagGKTAVVSTINGDSNVPFYKELANQGLKaTDVPVVA--FS 262
Cdd:cd06332 154 GFK--RGFEAaggEVVQEIWVPLGTTDFSPYIAQIPS----ADDAVFAFLGGADAVRFLKQYREFGLK-DKIPLIGggTT 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 263 VGEEELRGIDTKpLVGNLAAWNYFESVDNPTNQTFVAAYKAYAKahKLPnadtvvtNDPMEATYVGLHMWAQAVEKAG-- 340
Cdd:cd06332 227 VDESVLPAMGDA-ALGIISASHYAEGLDNPENKKFVAAYKKKFG--KLP-------SLYAAGGYDGAQAILEALEAVGgd 296
|
330 340 350
....*....|....*....|....*....|.
gi 1017593251 341 TTDVDKVRAAMAGQSFNAPSGfTLTMDATNH 371
Cdd:cd06332 297 VSDKQALAAALRKVKFDSPRG-PFSFDENRN 326
|
|
| PBP1_ABC_transporter_LIVBP-like |
cd06268 |
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the ... |
32-298 |
2.05e-26 |
|
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily; Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.
Pssm-ID: 380492 [Multi-domain] Cd Length: 298 Bit Score: 107.80 E-value: 2.05e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd06268 1 KIGVVVPLTGPYADYGEEILRGVALAVEEINAAGGINGRKLELVIADDQGDPETAVAVARKLVDDDKVLAVVGHYSSSVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNGLLFYPVQY---EGEEMSPNVFYTGAAPNQQAIPAVEYLMSEDGGsaKRFFLLGTDYVYPRTTNKILRA 188
Cdd:cd06268 81 LAAAPIYQEAGIPLISPGSTapeLTEGGGPYVFRTVPSDAMQAAALADYLAKKLKG--KKVAILYDDYDYGKSLADAFKK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 189 FLHSKGVedKDIEEVYTPFGHSDYQTIVASIKKFSAggkTAVVSTINGDSNVPFYKELANQGLKatdVPVVAF-SVGEEE 267
Cdd:cd06268 159 ALKALGG--EIVAEEDFPLGTTDFSAQLTKIKAAGP---DVLFLAGYGADAANALKQARELGLK---LPILGGdGLYSPE 230
|
250 260 270
....*....|....*....|....*....|.
gi 1017593251 268 LRGIDTKPLVGNLAAWNYFESVDNPTNQTFV 298
Cdd:cd06268 231 LLKLGGEAAEGVVVAVPWHPDSPDPPKQAFV 261
|
|
| PBP1_ABC_ligand_binding-like |
cd06338 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
32-382 |
6.05e-24 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380561 [Multi-domain] Cd Length: 347 Bit Score: 101.89 E-value: 6.05e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGV----LGKKLEPVVVDPASNwplfAEKARQ----LLSQDKVAVVF 103
Cdd:cd06338 1 KIGASLSLTGPFAGEGKAQKRGYELWVEDVNAAGGVkgggKKRPVELVYYDDQSD----PATAVRlyekLITEDKVDLLL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 104 GCWTSVSRKSVLPVFEElNGLLFypVQYEGEEMS------PNVFYTGAAPNQQAIPAVEYLMSEDGGsAKRFFLLGTDYV 177
Cdd:cd06338 77 GPYSSGLTLAAAPVAEK-YGIPM--IAGGAASDSifergyKYVFGVLPPASDYAKGLLDLLAELGPK-PKTVAIVYEDDP 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 178 YPRTTNKILRAFLhskgvEDKDIEEVYT---PFGHSDYQTIVASIKkfsAGGKTAVVSTINGDSNVPFYKELANQGLKat 254
Cdd:cd06338 153 FGKEVAEGAREAA-----KKAGLEVVYDesyPPGTTDFSPLLTKVK---AANPDILLVGGYPPDAITLVRQMKELGYN-- 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 255 dVPVVAFSVG-EEELRGIDTKPL---VGNLAAWNY-FESVDNPTNQTFVaaykayakahKLPNADTVVTNDPMEAT-YVG 328
Cdd:cd06338 223 -PKAFFLTVGpAFPAFREALGKDaegVLGPSQWEPsLPYKVFPGAKEFV----------KAYKEKFGEEPSYHAAAaYAA 291
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1017593251 329 LHMWAQAVEKAGTTDVDKVRAAMAGQSFNAPSGfTLTMDATNHHLHKPVMIGEI 382
Cdd:cd06338 292 GQVLQQAIEKAGSLDPEKVRDALASLDFDTVYG-PIKFDETGLQIGKPMVVVQW 344
|
|
| PBP1_RPA0668_benzoate-like |
cd20014 |
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the ... |
32-386 |
4.94e-23 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0668 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0668 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380667 [Multi-domain] Cd Length: 346 Bit Score: 99.23 E-value: 4.94e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGvlGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd20014 1 KIGLLLPYSGVYAALGEDIRNGFQLYLDEHGGKLG--GRPIELVKEDDEADPDVALQKARKLIEQDKVDVLVGPVSSGVA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNGLLFYPVQYE----GEEMSPNVFYTGAAPNQQAIPAVEYLmSEDGGsaKRFFLLGTDYVYPR-TTNKIL 186
Cdd:cd20014 79 LAIRDVVEQAKVPLIVANAGAnaltRAACSPYIFRTSFSNWQLGYALGKYA-AENVG--KTVVTIASDYAAGReVVAGFK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 187 RAFLHSKGvedKDIEEVYTPFGHS-DYQTIVASIKkfSAGGKtAVVSTINGDSNVPFYKELANQGLKAtDVPVV-AFSVG 264
Cdd:cd20014 156 EGFEAAGG---KVVGEIWTPLGTTtDFSPYLTQIA--ASGPD-AVYAFFAGADAVRFVKQYAEFGLKG-KIPLYgPGFLT 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 265 EEELRGIDTKPLVGNLAAWNYFESVDNPTNQTFVAAYKAYAKahKLPNADTVvtndpmeATYVGLHMWAQAVEKAG--TT 342
Cdd:cd20014 229 DEDVLPALGEAAEGIITVLHYAPTLDNPANRAFVAAYQAKYG--RLPDVYAV-------QGYDAAQVIDAALEAVGgdTS 299
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1017593251 343 DVDKVRAAMAGQSFNAPSGfTLTMDATNHHLHKPVMIGEIEGNG 386
Cdd:cd20014 300 DKDILAAALELGSIDSPRG-PFRFDPTTHNPIQNIYLREVVKGG 342
|
|
| PBP1_ABC_LivK_ligand_binding-like |
cd06347 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
32-379 |
2.12e-22 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380570 [Multi-domain] Cd Length: 334 Bit Score: 97.23 E-value: 2.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd06347 1 KIGVIGPLTGEAAAYGQPALNGAELAVDEINAAGGILGKKIELIVYDNKSDPTEAANAAQKLIDEDKVVAIIGPVTSSIA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEElNGLLFypvqyegeeMSP---NVFYTGAAPN---------QQAIPAVEYLMSEDGgsAKRFFLL---GTDY 176
Cdd:cd06347 81 LAAAPIAQK-AKIPM---------ITPsatNPLVTKGGDYifracftdpFQGAALAKFAYEELG--AKKAAVLydvSSDY 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 177 vyprtTNKILRAFlhSKGVEDKDIEEVYT---PFGHSDYQTIVASIKKFSAGgktAVVSTINGDSNVPFYKELANQGLKA 253
Cdd:cd06347 149 -----SKGLAKAF--KEAFEKLGGEIVAEetyTSGDTDFSAQLTKIKAANPD---VIFLPGYYEEAALIIKQARELGITA 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 254 T----DvpvvafSVGEEELRGIDTKPLVGNLAAWNYFESVDNPTNQTFVaaYKAYAKAHKLPNADTVVTNDpmeatyvGL 329
Cdd:cd06347 219 PilggD------GWDSPELLELGGDAVEGVYFTTHFSPDDPSPEVQEFV--KAYKAKYGEPPNAFAALGYD-------AV 283
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1017593251 330 HMWAQAVEKAGTTDVDKVR-AAMAGQSFNAPSGfTLTMDAtNHHLHKPVMI 379
Cdd:cd06347 284 MLLADAIKRAGSTDPEAIRdALAKTKDFEGVTG-TITFDP-NGNPIKPAVI 332
|
|
| PBP1_SBP-like |
cd06328 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
32-371 |
2.64e-20 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380551 [Multi-domain] Cd Length: 336 Bit Score: 91.21 E-value: 2.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGtmaisetPLKDVALMTIDEINA--------KGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVF 103
Cdd:cd06328 1 KIGVITSLTG-------PLAAYGKQTERGFELgleyatdgTMEVDGRKIEVIVKDDQGDPDTAKAAATELIGDDGVDILV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 104 GCWTSVSRKSVLPVFEELNGLLFY-PV---QYEGEEMSPNVFYTGAAPNQQAIPAVEYLMSEDGgsaKRFFLLGTDYVYP 179
Cdd:cd06328 74 GTVSSAVALALAPVAEQNKKILIVgPAaadSITGENWNKYTFRTSRNSWQDAIAGAKALADPLG---KSVAFLAQDYAFG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 180 RTTNKILRAFLHSKGveDKDIEEVYTPFGHSDYqtiVASIKKFSAGGKTAVVSTINGDSNVPFYKELANQGLKatDVPVV 259
Cdd:cd06328 151 QDGVAAFKKALEAKG--GKIVGEELVPVTTTDF---TPYLQRILDAKPDVLFVAWAGTGALTLWQQLADQGVL--DDIKV 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 260 AFSVGEEELRGIDTKPLVGNLAAWNYFESV-DNPTNQTFVAaykayakahKLPNADTVVTNDPMEATYVGLHMWAQAVEK 338
Cdd:cd06328 224 VTGGPDIATLAALGDALPGIEGLTYYYYGLpKNPVNDWLVK---------AHKERYNAPPDLFTAGGFAAAQAVVRALEK 294
|
330 340 350
....*....|....*....|....*....|....
gi 1017593251 339 AG-TTDVDKVRAAMAGQSFNAPSGfTLTMDATNH 371
Cdd:cd06328 295 AGgDTDVEKLIAALEGLTFETPKG-KMTIRAEDH 327
|
|
| PBP1_ABC_ligand_binding-like |
cd06336 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
32-379 |
2.94e-20 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380559 [Multi-domain] Cd Length: 345 Bit Score: 91.14 E-value: 2.94e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVL--GK--KLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWT 107
Cdd:cd06336 1 KIGFLGPLSGPAAAWGLPMLRGLELAADEINAAGGIKvgGKkyKVEVVSYDDKYTPAEAVAAARRLVSQDGVKFIFGPGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 108 SVSRKSVLPVFEELNGLLF---YPVQYEGEEmSPNVFYTGAAPNQQAIPAVEYLMSEDGgsAKRFFLLGTDYVYPRTTNK 184
Cdd:cd06336 81 SAIAAAVQPVTERNKVLLLtaaFSDPILGPD-NPLLFRIPPTPYEYAPPFIKWLKKNGP--IKTVALIAPNDATGKDWAA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 185 ILRAFLHSKGVEDkdIEEVYTPFGHSDYQTIVASIkkfsAGGKTAVVSTinGDSNVPF----YKELANQGLK-------A 253
Cdd:cd06336 158 AFVAAWKAAGGEV--VAEEFYDRGTTDFYPVLTKI----LALKPDALDL--GGSSPGPagliIKQARELGFKgpfvsegG 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 254 TDVPVVAFSVGEEELRGidtkpLVGNLAAwnYFESVDNPTNQTFVAAYKAYAKahKLPNADTVVTndpmeatYVGLHMWA 333
Cdd:cd06336 230 AKADEILKEVGGEAAEG-----FIGVLPA--DDDPIASPGAKAFVERYKKKYG--EPPNSESALF-------YDAAYILV 293
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1017593251 334 QAVEKAGTT-DVDKVRAAMAGQSFNAPSGFTL-----TMDATNHHLHKPVMI 379
Cdd:cd06336 294 KAMEKAGTVdDTKKIRAALAMLSPDETLFGKLkwggkEIYGINHQLLVPVVV 345
|
|
| PBP1_SBP-like |
cd20378 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
32-377 |
9.22e-20 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380668 [Multi-domain] Cd Length: 357 Bit Score: 90.10 E-value: 9.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEinaKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd20378 1 TLGGLVSMSGAFAAAGKLADRGMRLAVEE---YGGALGRPLKYITRDTEGKPGTGVRKVQEAIAQDGARFFIGGTLSSVA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNGLLFYPVQYE---GEEMSPNVFyTGAAPNQQAIPA-VEYLMSEDGgSAKRFFLLGTDYVYP----RTTN 183
Cdd:cd20378 78 LAVSEEAEKAGGVYITSGGADeitGSRCNRSTF-RWSVPTYGAIRQtVRPVIKAMP-KAKRWYTITPQYVFGesllKNAK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 184 KILRaflhskgveDKDIEEV---YTPFGHSDYQTIVASikkfSAGGKTAVVSTIN-GDSNVPFYKELANQGLKATDVPVV 259
Cdd:cd20378 156 EVLK---------EKGIEHVgnsYHSLGEREFSGYLTK----AMAARPDVLLILNfGSQAVDALRQAVSFGLKRKMKILV 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 260 AFSVGEEELRGIDTKPLVGNLAAWNYFESVDNPTNQTFVaaykayakahKLPNAD-TVVTNDPMEATYVGLHMWAQAVEK 338
Cdd:cd20378 223 AWSSGLDQFQELGPDICEGVYFGAQYWHDVDTPANKALV----------KVYQAKfKETPSYALAAGYACTRMLLDAIDK 292
|
330 340 350
....*....|....*....|....*....|....*....
gi 1017593251 339 AGTTDVDKVRAAMAGQSFNAPSGfTLTMDATNHHLHKPV 377
Cdd:cd20378 293 AGSTDPAAVIKALEGLKYDGITG-DEEVRAADHQVLKPY 330
|
|
| PBP1_SBP-like |
cd19987 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
32-379 |
1.19e-19 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380642 [Multi-domain] Cd Length: 353 Bit Score: 89.70 E-value: 1.19e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKG------------GVLGKKLEPVVVDPASNwplfAEKARQ----LLS 95
Cdd:cd19987 1 TIGLNVPLSGPYAPQGEDQRRGFELAVDHLNNGGglvdkdsrlsgdGILGKKVELVTADTETK----ADTAVDnakrLIE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 96 QDKVAVVFGCWTSVSRKSVLPVFEElNGLLFYPV-----QYEGEEMSPNVF------YTGAapnqQAIpaVEYLmSEDGG 164
Cdd:cd19987 77 QDGAVMITGGSSSAVAVAAQKLAQK-EGVLYFAGlshsnDTTGKDCHRYGFrecfnaHMSA----KAL--APYL-VEKFG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 165 SAKRFFLLGTDYVYPRTTNKILRAFLHSKGVedKDIEEVYTPFGHSDYqtiVASIKKFSAGGKTAVVSTINGDSNVPFYK 244
Cdd:cd19987 149 KDRKYFYLTADYTWGHSTEQSMREYTEAHGW--KTVGNPATPLGETDF---SAALLNAADSGADVLVLVLFGRDMVNALK 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 245 ELANQGL-KATDV------PVVAFSVGEEELRGIdtkplvgnLAAWNYFESVDNPTNQTFVAAYKAYAKAHKLPNadtvv 317
Cdd:cd19987 224 QAKQFGLlKKMDIvvplltAFMAESVGPEIMEGV--------LGTVNWHWSLPDDYSYAFGKAEAFEKEYGAYPS----- 290
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1017593251 318 tnDPMEATYVGLHMWAQAVEKAGTTDVDKVRAAMAGQSFNAPSGFTlTMDATNHHLHKPVMI 379
Cdd:cd19987 291 --QAAASAYVQVLQYAAAVERAGSFDPPAVIRALEGHEYTLLKGEQ-YWRACDHQSVRPVYV 349
|
|
| PBP1_ABC_LIVBP-like |
cd06342 |
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active ... |
32-369 |
1.78e-19 |
|
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Pssm-ID: 380565 [Multi-domain] Cd Length: 334 Bit Score: 88.74 E-value: 1.78e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNwPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd06342 1 KIGVAGPLTGPNAALGQDIRNGAELAVDEINAKGGGLGFKIELVAQDDACD-PAQAVAAAQKLVADGVVAVIGHYNSGAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEElNGLLFypvqyegeeMSP-------------NVFYTGAAPNQQAIPAVEYLMSEdgGSAKRFFLL--GTDY 176
Cdd:cd06342 80 IAAAPIYAE-AGIPM---------ISPsatnpklteqgykNFFRVVGTDDQQGPAAADYAAKT--LKAKRVAVIhdGTAY 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 177 vyprtTNKILRAFlhSKGVEDKDIEEV---YTPFGHSDYQTIVASIKKFSAggkTAVVSTINGDSNVPFYKELANQGLKA 253
Cdd:cd06342 148 -----GKGLADAF--KKALKALGGTVVgreGITPGTTDFSALLTKIKAANP---DAVYFGGYYPEAGLLLRQLREAGLKA 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 254 TdvpvvaFsVGEEELRGIDTKPLVGNLAAWNYFESVDNPTNqtfvaaykayakahKLPNADTVVT------NDPMEA--- 324
Cdd:cd06342 218 P------F-MGGDGIVSPDFIKAAGDAAEGVYATTPGAPPE--------------KLPAAKAFLKaykakfGEPPGAyaa 276
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1017593251 325 -TYVGLHMWAQAVEKAGTTDVDKVRAAMAGQSFNAPSGfTLTMDAT 369
Cdd:cd06342 277 yAYDAAQVLLAAIEKAGSTDRAAVAAALRATDFDGVTG-TISFDAK 321
|
|
| PBP1_alkylbenzenes-like |
cd06360 |
type 1 periplasmic binding component of active transport systems predicted be involved in ... |
32-361 |
4.63e-19 |
|
type 1 periplasmic binding component of active transport systems predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; This group includes the type 1 periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Pssm-ID: 380583 [Multi-domain] Cd Length: 357 Bit Score: 87.74 E-value: 4.63e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGvlGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFG-CWTSVS 110
Cdd:cd06360 1 KIGVLLPLTGPLAVNGEDVRDGFELYFDEIGNQVA--GRKIELIVEDDEGKPDVGLTKARKLVERDKVHVLAGiVSSAVA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 111 ---------RKSVLPV-FEELNGLLfypvqyeGEEMSPNVFYTGAAPNQQAIPAVEYLMSEdgGSAKRFFLLGTDYVYPR 180
Cdd:cd06360 79 yavrdyvveQKIPLVIsNAGAAPLT-------QELASPYIFRTSFSNGQYDAPFGQYAYEK--LGYRRIAVMASDYAAGH 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 181 TTNK-ILRAFLHSKGvedKDIEEVYTPFGHSDYQTIVASIKKFSAggkTAVVSTINGDSNVPFYKELANQGLKATDVPVV 259
Cdd:cd06360 150 EQAGaFARTFKQAGG---KVVQEIYPPLGTADFAPYLARIQQDAA---DAVWAFFAGADAIRFVKQYDEYGLKGKLPLVG 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 260 AFSVGEEELRGIDTKPLVGNLAAWNYFESVDNPTNQTFVAAYKAYAKahKLPnadtvvtNDPMEATYVGLHMWAQAVEKA 339
Cdd:cd06360 224 IGGLVDDAILPEQGDAALGIVSYLHYSAALDTPENKAFVQAYRKKYG--RDP-------GLYAEGGYVAARAIAEALEAV 294
|
330 340
....*....|....*....|....
gi 1017593251 340 G--TTDVDKVRAAMAGQSFNAPSG 361
Cdd:cd06360 295 KgnVEDKEAFLEALRKVRFEAPRG 318
|
|
| PBP1_SBP-like |
cd06329 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
32-380 |
1.49e-18 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380552 [Multi-domain] Cd Length: 343 Bit Score: 86.18 E-value: 1.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMA-ISETPLKDVaLMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQdKVAVVFGCWTSVS 110
Cdd:cd06329 1 KIAFIDPLSGPFAsVGEIYLKGL-QFAIEEINAGGGLLGRKIELVPFDNKGSPQEALIQLKKAIDQ-GIRFVLQGNSSAV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 111 RKSVLPVFEELNGL-LFYPVQY----------EGEEMSPNVFYTGAAPNQQAIPAVEYlMSEDGgSAKRFFLLGTDYVYP 179
Cdd:cd06329 79 AGALIDAIEKHNQRnPDKRVLFlnygaeapelTGAKCSFWHFRFDANADMKMAALADY-MKKDG-SIKKVYLINQDYSFG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 180 RTtnkILRAFLHSKGVEDKDIE---EVYTPFGH-SDYQTIVASIKkfsAGGKTAVVsTINGDSN-VPFYKELANQGLKAT 254
Cdd:cd06329 157 RD---VAAAAKKNLKKKRPDIEivgEDLHPLGKvKDFSPYIAKIK---ASGADTVI-TGNWGNDlTLLMKAARDSGLKAP 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 255 ------DVPVVAFSVGEEElrgidtkplVGNLAAWNYF-ESVDNPTNQTFVAAYkayakaHKLPNADTVVTNDPmeaTYV 327
Cdd:cd06329 230 fytyyaDGPGAPAAIGEAG---------VGRLVAVAYWhPNPKTPELEKFAEAF------RAKYGRYPDFNIGR---TYM 291
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1017593251 328 GLHMWAQAVEKAGTTDVDKVRAAMAGQSFNAPSGfTLTMDATNHHLHKPVMIG 380
Cdd:cd06329 292 GVEMLAAAIKKAGSTDPEKVAKALEGLSFDTPGG-PVTMRADDHQAIQPLYIS 343
|
|
| PBP1_Nba-like |
cd06359 |
type 1 periplasmic binding component of active transport systems predicted to be involved in ... |
32-298 |
3.36e-18 |
|
type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway; This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Pssm-ID: 380582 [Multi-domain] Cd Length: 333 Bit Score: 85.00 E-value: 3.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGvlGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFG-CWTSVS 110
Cdd:cd06359 1 KIGFITTLSGPAAVLGQDMRDGFNLALEQLGGKLG--GLPVEVVVEDDQLKPDVAKQAAERLIERDKVDFVTGiIFSNVM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 111 RKSVLPVFEelNGLLFY-----PVQYEGEEMSPNVFYTGAAPNQQAIPAVEYlMSEDGgsAKRFFLLGTDYvypRTTNKI 185
Cdd:cd06359 79 LAVVKPVVD--SKVFYIsanagPSDLAGKGCNPNFFVTSWQNDQLHEAAGKY-ANDKG--YKRVYLLAPNY---QAGKDA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 186 LRAFL-HSKGvedKDIEEVYTPFGHSDYQtivASIKKFSAGGKTAVVSTINGDSNVPFYKELANQGLKATDVPVVAFSVG 264
Cdd:cd06359 151 LAGFKrTYKG---EVVGEIYTPLGQLDFS---AELAQIRAAKPDAVFAFYPGGMGVNFVKQYAQAGLKKKIPLYTVGTLD 224
|
250 260 270
....*....|....*....|....*....|....
gi 1017593251 265 EEELRGIDTKPLVGNLAAWNYFESVDNPTNQTFV 298
Cdd:cd06359 225 DEDLLPAMGDAALGVLSVSQWSPDLDNPENKRFV 258
|
|
| PBP1_ABC_ligand_binding-like |
cd06340 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
32-350 |
5.65e-17 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380563 [Multi-domain] Cd Length: 352 Bit Score: 81.84 E-value: 5.65e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGG---VLGKKLEPVVVDPASNwplfAEKARQ----LLSQDKVAVVFG 104
Cdd:cd06340 1 KIGVLYPLSGPLALIGQEAKRGAELAVDEINAAGGiksLGGAKIELVVADTQSD----PEVAASeaerLITQEGVVAIIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 105 CWTSVSRKSVLPVFEElNGLLFypvqyegeeMSP-------------NVFYTGAAPNQQAIPAVEYL---MSEDGGSAKR 168
Cdd:cd06340 77 AYSSSVTLAASQVAER-YGVPF---------VTAsavadeitergfkYVFRTAPTASQFAEDAVDFLkelAKKKGKKIKK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 169 FFLLGTDYVYPRTTNKILRAFLHSKGVEDKDiEEVYTPfGHSDYQTIVASIKkfSAGGKTAVVSTINGDSNVpFYKELAN 248
Cdd:cd06340 147 VAIIYEDSAFGTSVAKGLKKAAKKAGLEVVL-DEPYPA-GATDLSSEVLKLK--AAKPDVVFATSYTNDAIL-LLRTMKE 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 249 QGLKatdvpvvafsvgeeelrgidTKPLVGNLAAWNYFESVDNPT---NQTFVAAYKAYAKAHKLPNADTVV------TN 319
Cdd:cd06340 222 LGFK--------------------PKAIIGVGGGYSDPEFLKALGkdaEGVFSVVPWSPDLAKKKPGAKEVNerykkkYG 281
|
330 340 350
....*....|....*....|....*....|....*
gi 1017593251 320 DPMEA----TYVGLHMWAQAVEKAGTTDVDKVRAA 350
Cdd:cd06340 282 EDMTGhaarAYTAAWVLADALERAGSTDPEAIRAA 316
|
|
| PBP1_ABC_ligand_binding-like |
cd06343 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
20-384 |
1.03e-16 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Pssm-ID: 380566 [Multi-domain] Cd Length: 355 Bit Score: 81.08 E-value: 1.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 20 GVSfgvqaAETIKVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKV 99
Cdd:cd06343 1 GVT-----DDEIKIGTSLPLSGPAAAYGKPVRAGAAAYFDEVNAAGGINGRKIELIVEDDGYDPARAVAAVRKLVEQDKV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 100 AVVFGCWTSVSRKSVLPVFEElNGLLFYPVQYEGEEMS----PNVFYTGAAPNQQAIPAVEYLMSEDGgsAKRFFLLGTD 175
Cdd:cd06343 76 FAIVGGLGTPTNLAVRPYLNE-AGVPQLFPATGASALSpppkPYTFGVQPSYEDEGRILADYIVETLP--AAKVAVLYQN 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 176 YVYPRTTNKILRAFLHSKGVEDKDiEEVYTPfGHSDYQTIVASIKkfsAGGKTAVVSTINGDSNVPFYKELANQGLKATd 255
Cdd:cd06343 153 DDFGKDGLEGLKEALKAYGLEVVA-EETYEP-GDTDFSSQVLKLK---AAGADVVVLGTLPKEAAAALKEAAKLGWKPT- 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 256 vPVVAFSVGEEELrgidTKPLVGNLA----AWNYFESVDNPTN---QTFVAAYKayakahKLPNADTVVTNdpMEATYVG 328
Cdd:cd06343 227 -FLGSSVSADPTT----LAKAGGDAAegvySASYLKDPTDADDpavKEFREAYK------KYFPDDPPNAY--ALYGYAA 293
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1017593251 329 LHMWAQAVEKAGTT-DVDKVRAAMAGQSFNAPSGF--TLTMDATNHHLHKPVMIGEIEG 384
Cdd:cd06343 294 AQVFVEALKRAGKDlTREGLIKALESLKDFDDGGPgpPVTFSPDDHRGIESMYLVQVDG 352
|
|
| PBP1_ABC_ligand_binding-like |
cd06335 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
32-351 |
5.06e-16 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380558 [Multi-domain] Cd Length: 348 Bit Score: 78.80 E-value: 5.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd06335 1 KIGVIGPLTGPSAELGESARRGVELAVEEINAAGGILGRKIELVERDDEANPTKAVQNAQELIDKEKVVAIIGPTNSGVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNGLLFYPVQ------YEGEEMSPNVFYTGAAPNQQAIPAVEYLMSEdggSAKRFFLLGTDYVYPRTTNKI 185
Cdd:cd06335 81 LATIPILQEAKIPLIIPVAtgtaitKPPAKPRNYIFRVAASDTLQADFLVDYAVKK---GFKKIAILHDTTGYGQGGLKD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 186 LRAFLHSKGVEDKDIEEvYTPfGHSDYQTIVASIKKfsAGGKTAVVSTINGDSNVPFyKELANQGLKatdVPVV---AFS 262
Cdd:cd06335 158 VEAALKKRGITPVATES-FKI-GDTDMTPQLLKAKD--AGADVILVYGLGPDLAQIL-KAMEKLGWK---VPLVgswGLS 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 263 VGE-EELRGIDT-KPLVGNLAAWNYFesvdNPTNQTFVAAYKAYAKAHKLPNADTVVtndpmeATYVGLHMWAQAVEKAG 340
Cdd:cd06335 230 MPNfIELAGPLAeGTIMTQTFIEDYL----TPRAKKFIDAYKKKYGTDRIPSPVSAA------QGYDAVYLLAAAIKQAG 299
|
330
....*....|.
gi 1017593251 341 TTDVDKVRAAM 351
Cdd:cd06335 300 STDGKKIRAAL 310
|
|
| PBP1_ABC_ligand_binding-like |
cd06345 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
54-393 |
5.62e-16 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380568 [Multi-domain] Cd Length: 356 Bit Score: 78.85 E-value: 5.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 54 ALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSRKSVLPVFEELN----------G 123
Cdd:cd06345 20 AELAVEEINAAGGILGRKVELVVADTQGKPEDGVAAAERLITEDKVDAIVGGFRSEVVLAAMEVAAEYKvpfivtgaasP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 124 LLFYPVQ--YEGEEM----SPNVFYTGAapnQQAIPAVEYLMSEDGgsAKRFFLLGTDYVYPRTTNKILRAFLHSKGVED 197
Cdd:cd06345 100 AITKKVKkdYEKYKYvfrvGPNNSYLGA---TVAEFLKDLLVEKLG--FKKVAILAEDAAWGRGIAEALKKLLPEAGLEV 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 198 KDIEevYTPFGHSDYQTIVASIKKFSAGgktAVVSTINGDSNVPFYKELANQGLKATDVPVVAFSVGEEELRgiDTKPLV 277
Cdd:cd06345 175 VGVE--RFPTGTTDFTPILSKIKASGAD---VIVTIFSGPGGILLVKQWAELGVPAPLVGINVPAQDPEFWE--NTGGAG 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 278 GNLAAWNYFESVDNPTNQTFVAAYKAYAKAHKLPNADTVvtndpmeATYVGLHMWAQAVEKAGTTDVDKVRAAMAGQSFN 357
Cdd:cd06345 248 EYEITLAFAAPKAKVTPKTKPFVDAYKKKYGEAPNYTAY-------TAYDAIYILAEAIERAGSTDPDALVKALEKTDYE 320
|
330 340 350
....*....|....*....|....*....|....*.
gi 1017593251 358 APSGfTLTMDATNHHLHKPvmigeIEGNGQFNVVWQ 393
Cdd:cd06345 321 GVRG-RIKFDKKDEYPHDV-----KYGPGYVTGLIF 350
|
|
| PBP1_ABC_HAAT-like |
cd06348 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
32-384 |
1.90e-15 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380571 [Multi-domain] Cd Length: 342 Bit Score: 76.89 E-value: 1.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd06348 1 KIGVALSLTGPGALYGQSQKNGAQLAVEEINAAGGVGGVKIELIVEDTAGDPEQAINAFQKLINQDKVLAILGPTLSSEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNgllfYPV-----QYEG-EEMSPNVFYTGAAPNQQAIPAVEYLMSEDGgsAKRFFLL-GTDYVYPRTTNK 184
Cdd:cd06348 81 FAADPIAQQAK----VPVvgisnTAPGiTDIGPYIFRNSLPEDKVIPPTVKAAKKKYG--IKKVAVLyDQDDAFTVSGTK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 185 ILRAFLHSKGVEDKDIEEVYTpfGHSDYQTIVASIKKFSAGGktAVVSTINGDSnVPFYKELANQGLKatdVPVvafsVG 264
Cdd:cd06348 155 VFPAALKKNGVEVLDTETFQT--GDTDFSAQLTKIKALNPDA--IVISALAQEG-ALIVKQARELGLK---GPI----VG 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 265 EEELRGIDTKPLVGNLA-------AWNYfeSVDNPTNQTFVaaYKAYAKAHKLPNADTVvtndpmeATYVGLHMWAQAVE 337
Cdd:cd06348 223 GNGFNSPDLIKLAGKAAegvivgsAWSP--DNPDPKNQAFV--AAYKEKYGKEPDQFAA-------QAYDAAYILAEAIK 291
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1017593251 338 KAG-TTDVDKVRAAMAGQ----SFNAPSGFTlTMDAtNHHLHKPVMIGEIEG 384
Cdd:cd06348 292 KAGsTTDRADLRDALARIliakDFEGPLGPF-SFDA-DRDGIQPPVVLIVKD 341
|
|
| PBP1_ABC_HAAT-like |
cd06349 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
32-388 |
1.12e-14 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380572 [Multi-domain] Cd Length: 338 Bit Score: 74.53 E-value: 1.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNwPLFAEK-ARQLLSQDKVAVVFGCWTSVS 110
Cdd:cd06349 1 KIGVSGPLTGDNAEYGQQFKNGVELAVDEINAAGGVNGRKLELVVYDDQGD-PKEAVNiAQKFVSDDKVVAVIGDFSSSC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 111 RKSVLPVFEElNGLlfypVQYEG-------EEMSPNVFytGAAPNQQAI-PAVEYLMSEDGGsAKR--FFLLGTDyvYPR 180
Cdd:cd06349 80 SMAAAPIYEE-AGL----VQISPtashpdfTKGGDYVF--RNSPTQAVEaPFLADYAVKKLG-AKKiaIIYLNTD--WGV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 181 TTNKILRaflhsKGVEDKDIE----EVYTPfGHSDYQTIVASIKkfSAGGKTAVVSTINGDSnVPFYKELANQGLkatDV 256
Cdd:cd06349 150 SAADAFK-----KAAKALGGEivatEAYLP-GTKDFSAQITKIK--NANPDAIYLAAYYNDA-ALIAKQARQLGW---DV 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 257 PVVAF-SVGEEELRGIDTKPLVGNLAAWNYFESVDNPTNQTFVaaYKAYAKAHKLPNADTVVtndpmeaTYVGLHMWAQA 335
Cdd:cd06349 218 QIFGSsSLYSPEFIELAGDAAEGVYLSSPFFPESPDPEVKEFV--KAYKAKYGEDPDDFAAR-------AYDAVNILAEA 288
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1017593251 336 VEKAGtTDVDKVRAAMAGQSFNAPSGFTLTMDAtNHHLHKPVMIGEIEgNGQF 388
Cdd:cd06349 289 IEKAG-TDREAIRDALANIKDFSGLTGTITFDE-NGDVLKSLTILVVK-DGKF 338
|
|
| PBP1_ABC_RPA1789-like |
cd06333 |
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, ... |
32-371 |
9.55e-14 |
|
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, RPA1791-1793), involved in active transport of lignin-derived aromatic substrates, and its close homologs; This group includes RPA1789 (CouP) from Rhodopseudomonas palustris and its close homologs in other bacteria. RPA1789 (CouP) is the periplasmic binding-protein component of an ABC system (CouPSTU; RPA1789, RPA1791-1793) that is involved in the active transport of lignin-derived aromatic substrates. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380556 [Multi-domain] Cd Length: 342 Bit Score: 71.81 E-value: 9.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd06333 1 KIGAILSLTGPAASLGIPERNAVELLVEQINAAGGINGRKLELIVYDDESDPTKAVTNARKLIEEDKVDAIIGPSTTGES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNGLLFYPVQYEG--EEMSPNVFYTgAAPNQQAIPA-VEYlMSEDGgsAKRFFLLGTDYVYPRTTNKILRA 188
Cdd:cd06333 81 LAVAPIAEEAKVPLISLAGAAAivEPVRKWVFKT-PQSDSLVAEAiLDY-MKKKG--IKKVALLGDSDAYGQSGRAALKK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 189 FLHSKGVEDKDIEevytPFGHSDyQTIVASIKKFSAGGKTAVVSTINGDSNVPFYKELANQGLKAtdvpvvafsvgeeel 268
Cdd:cd06333 157 LAPEYGIEIVADE----RFARTD-TDMTAQLTKIRAAKPDAVLVWASGPPAALVAKNLRQLGYKG--------------- 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 269 rgidtkPLVGNLAAWNYF------ESVDNptnqTFVAAYkayakahKLPNADTVVTNDPMEA------------------ 324
Cdd:cd06333 217 ------PIYQSHGAANQDfiklagKAAEG----VILPAG-------KLLVADQLPDSDPQKKvllefvkayeakygegps 279
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1017593251 325 -----TYVGLHMWAQAVEKAGTTDVDKVRAAMAGQSFNAPSGFTLTMDATNH 371
Cdd:cd06333 280 tfaghAYDALLLLVEAIEPAGGTDRAALRDALENTKGLVGVTGVYNFSPTDH 331
|
|
| PBP1_ABC_HAAT-like |
cd19986 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
32-298 |
2.46e-13 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380641 [Multi-domain] Cd Length: 297 Bit Score: 69.96 E-value: 2.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd19986 1 KIGVVAPLTGPAALNGEYQKNGAQLALEEINAAGGVLGRPLELVVEDDQGTNTGAVNAVNKLISDDKVVAVIGPHYSTQV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEElNGLlfyPVQYEG------EEMSPNVFYTGAAPNQQAIPAVEYlMSEDGGSAKRFFLLGTDyVYPRTTNKI 185
Cdd:cd19986 81 LAVSPLVKE-AKI---PVITGGtspkltEQGNPYMFRIRPSDSVSAKALAKY-AVEELGAKKIAILYDND-DFGTGGADV 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 186 LRAFLHSKGVEDKdIEEVYTPfGHSDYQTIVASIKKFSAggktAVVSTINGDSNVP-FYKELANQGLkatDVPVVAF-SV 263
Cdd:cd19986 155 VTAALKALGLEPV-AVESYNT-GDKDFTAQLLKLKNSGA----DVIIAWGHDAEAAlIARQIRQLGL---DVPVIGSsSF 225
|
250 260 270
....*....|....*....|....*....|....*
gi 1017593251 264 GEEELRGIDTKPLVGNLAAWNYFESVDNPTNQTFV 298
Cdd:cd19986 226 ATPTVLLLAGEALEGIYSVTDFVPSDPDPKVQAFV 260
|
|
| PBP1_ABC_ligand_binding-like |
cd06326 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
31-263 |
8.51e-12 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380549 [Multi-domain] Cd Length: 339 Bit Score: 66.03 E-value: 8.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 31 IKVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVS 110
Cdd:cd06326 1 IVIGQSAPLSGPLAELGREYLAGAKAYFDQVNAAGGINGRKIRLVTLDDGYDPARTVENTRQLIEQDKVVALFGYVGTAN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 111 RKSVLPVFEELNGLLFYPVQyeG-----EEMSPNVFYTGAAPNQQAIPAVEYLMSEdggSAKRFFLLGTDYVYPRTTNKI 185
Cdd:cd06326 81 VEAVLPLLEEAGVPLVGPLT--GadslrEPGNPYVFHVRASYADEVEKIVRHLATL---GLKRIAVVYQDDPFGKEGLAA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1017593251 186 LRAFLHSKGVEDKdIEEVYTPFGhSDYQTIVASIKKFSAGgktAVVSTINGDSNVPFYKELANQGLKAtdvPVVAFSV 263
Cdd:cd06326 156 AEAALAARGLEPV-ATAAVARNA-ADVAAAAAALAAAKPQ---AVVLIAAGKAAAAFIKALRAAGGAA---QFYGLSV 225
|
|
| PBP1_RPA0985_benzoate-like |
cd20013 |
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the ... |
32-394 |
9.45e-12 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0985 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0985 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380666 [Multi-domain] Cd Length: 356 Bit Score: 66.12 E-value: 9.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDvalmTIDEINAKGG--VLGKKLEPVVVDPASNWPLFAEK-ARQLLSQDKVAVVFGCWTS 108
Cdd:cd20013 1 KVGVIGPFSGPFADYGKQFDR----GIDLYLKLHGdkVGGRKVEVIYRDDGGPNPAVAKRlAQELIVRDKVQILIGFGFT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 109 VSRKSVLPVFEELNGLLFYPVQYEGE--EMSPNVFYTGAAPNQQAIPAVEYlMSEDGgsAKRFFLLGTDYVyprTTNKIL 186
Cdd:cd20013 77 PNALAVAPVATEAKTPTVIMNAATSSitRKSPYFVRTSFTMWQVAYPMGKW-AAKNG--IKKAYTAVADYA---PGHDAE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 187 RAFlhSKGVED---KDIEEVYTPFGHSDYQTIVASIKkfSAGGKTAVVSTINGDSNVPFYKELANQGLKATDVPVVafSV 263
Cdd:cd20013 151 TAF--KKAFEAaggKIVGSIRVPLATPDFAPFMQRIK--DAKPDAVFVFVPAGAPSIGFLKAYAERGLKEAGIKLL--GT 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 264 GEEElrGIDTKPLVGNLA-----AWNYFESVDNPTNQTFVAAYKAYAKAHKLPNADTVVTNDPMEATYvglhmwaQAVEK 338
Cdd:cd20013 225 GDAT--DDDDLPAMGDAAlglitAGHYSAALDSPENKAFVAAYQKAYGPDARPDFMAVAAYDGMALIY-------KMIKA 295
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1017593251 339 -AGTTDVDKVRAAMAGQSFNAPSGfTLTMDATNHHLHKPVMIGEIE--GNGQFNVVWQT 394
Cdd:cd20013 296 tGGKFDGDKAMAAVKGLKWESPRG-PISIDPETRDIVQNVYIRRVEkvDGKLQNVEFDT 353
|
|
| PRK15404 |
PRK15404 |
high-affinity branched-chain amino acid ABC transporter substrate-binding protein; |
5-368 |
4.14e-11 |
|
high-affinity branched-chain amino acid ABC transporter substrate-binding protein;
Pssm-ID: 237959 [Multi-domain] Cd Length: 369 Bit Score: 63.89 E-value: 4.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 5 TFIKAFALSASVVAMGVSFGVQAaETIKVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNwP 84
Cdd:PRK15404 1 MKSKGKTLLAGCIALALSHAALA-DDIKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGIKGDKLEGVEYDDACD-P 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 85 LFAEKARQLLSQDKVAVVFGCWTSVSRKSVLPVFEElngllfypvqyEGEEMspnvfYTGAAPNQQaIPAVEYLM----- 159
Cdd:PRK15404 79 KQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYED-----------EGILM-----ITPAATAPE-LTARGYQLifrti 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 160 ---SEDGGSAKRFFLlgtDYVYPRTTnkilrAFLHSK-------------GVEDKDIEEVYtpF-----GHSDYQTIVAS 218
Cdd:PRK15404 142 gldSDQGPTAAKYIL---EKVKPKRI-----AVLHDKqqygeglarsvkdGLKKAGANVVF--FegitaGDKDFSALIAK 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 219 IKKfsaggktavvstingdSNVPF------YKEL-------ANQGLKATdvpvvaF----SVGEEELRGIDTKPLVGNLA 281
Cdd:PRK15404 212 LKK----------------ENVDFvyyggyHPEMgqilrqaREAGLKTQ------FmgpeGVGNKSLSNIAGPASEGMLV 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 282 AW-NYFESvdNPTNQTFVAAYKAYAkahKLPNADTVVTndpmeaTYVGLHMWAQAVEKAGTTDVDKVRAAMAGQSFNAPS 360
Cdd:PRK15404 270 TLpKRYDQ--DPANKAIVDAFKAKK---QDPSGPFVWT------TYAAVQSLAAGINRAGSDDPAKVAKYLKANTFDTVI 338
|
....*...
gi 1017593251 361 GfTLTMDA 368
Cdd:PRK15404 339 G-PLSWDE 345
|
|
| PBP1_ABC_ligand_binding-like |
cd06341 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
32-256 |
5.44e-11 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380564 [Multi-domain] Cd Length: 340 Bit Score: 63.48 E-value: 5.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCwTSVSR 111
Cdd:cd06341 1 KIGLIYPDTGPGAASFSAARAGAEARFGLANAAGGINGRKVEYVWCDDQSDPATNLQAARQLVEDEKVFALVGS-SSAAS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELN----GLLFYPVQYEgEEMSPNVFYTGAAPNQQAIPAVEYlmsedGGSAKRFFLLGTD--YVYPRTTNKI 185
Cdd:cd06341 80 GSANDYLAQAGipvvGGAGVSVWCF-RNMFSNFFSLGGGGSTTTYGQYAA-----ALGGTKAAVVVTDipAASQQLAQQL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1017593251 186 LRAfLHSKGVEDKDIEEVYTpfGHSDYQTIVASIKkfsAGGKTAVVSTINGDSNVPFYKELANQGLKATDV 256
Cdd:cd06341 154 AAS-LRAAGVEVVGTAPYAA--AAPDYTAVAQAAK---AAGADAVVGVLDPDVAARVLKAARAQGLDLKVA 218
|
|
| PBP1_ABC_ligand_binding-like |
cd06346 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
32-117 |
6.32e-11 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380569 [Multi-domain] Cd Length: 314 Bit Score: 62.97 E-value: 6.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd06346 1 KIGALLPLTGPLASLGPPMLAAAELAVEEINAAGGVLGKKVELVVEDSQTDPTAAVDAARKLVDVEGVPAIVGAASSGVT 80
|
....*.
gi 1017593251 112 KSVLPV 117
Cdd:cd06346 81 LAVASV 86
|
|
| PBP1_ABC_HAAT-like |
cd19988 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
32-120 |
1.65e-10 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380643 [Multi-domain] Cd Length: 302 Bit Score: 61.52 E-value: 1.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd19988 1 KIGVFGPLSGDAAPYGQAMLQGAELAVEEINAAGGILGIPIELVVEDDEGLPAASVSAAKKLIYQDKVWAIIGSINSSCT 80
|
....*....
gi 1017593251 112 KSVLPVFEE 120
Cdd:cd19988 81 LAAIRVALK 89
|
|
| PBP1_ABC_HAAT-like |
cd19981 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
32-220 |
2.10e-10 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380636 [Multi-domain] Cd Length: 297 Bit Score: 61.15 E-value: 2.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd19981 1 KIGFFAPLTGPAAADGKSALHGAELAVEQINAAGGINGKKVELVVYDDQASPKQAVNIAQKLIEQDKVVAVVSGSYSGPT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELN--GLLFYPVQYEGEEMSPNVFYTGAAPNQQAiPAVEYLMSEDGGsAKRFFLLGTDYVYPRTtnkILRAF 189
Cdd:cd19981 81 RAAAPIFQEAKvpMVSAYAVHPDITKAGDYVFRVAFLGPVQG-RAGAEYAVKDLG-AKKVAILTIDNDFGKS---LAAGF 155
|
170 180 190
....*....|....*....|....*....|....
gi 1017593251 190 lhSKGVEDKDIEEVYT---PFGHSDYQTIVASIK 220
Cdd:cd19981 156 --KEEAKKLGAEIVSEyayALGDRDFRPILTKIK 187
|
|
| PBP1_ABC_ligand_binding-like |
cd19984 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
32-254 |
4.61e-10 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380639 [Multi-domain] Cd Length: 296 Bit Score: 60.31 E-value: 4.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd19984 1 KIGVILPLTGDAASYGEDMKNGIELAVEEINAAGGINGKKIELIYEDSKCDPKKAVSAANKLINVDKVKAIIGGVCSSET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNGLLFYPVQYEGE--EMSPNVFYTGAAPNQQAIPAVEYlMSEDGgsAKRFFLLGTDYVYPRTTNKILRAF 189
Cdd:cd19984 81 LAIAPIAEQNKVVLISPGASSPEitKAGDYIFRNYPSDAYQGKVLAEF-AYNKL--YKKVAILYENNDYGVGLKDVFKKE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1017593251 190 LHSKGVEDkDIEEVYTPfGHSDYQTIVASIKKFSAggkTAVVSTINGDSNVPFYKELANQGLKAT 254
Cdd:cd19984 158 FEELGGKI-VASESFEQ-GETDFRTQLTKIKAANP---DAIFLPGYPKEGGLILKQAKELGIKAP 217
|
|
| PBP1_ABC_ligand_binding-like |
cd19982 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
32-122 |
5.01e-10 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380637 [Multi-domain] Cd Length: 302 Bit Score: 60.37 E-value: 5.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd19982 1 KIGAILSLTGPFAPFGEMFKNGYEMALEEINAAGGIKGKKLELVIEDDQSKPQTALAAAEKLVSQDKVPLIVGGYSSGIT 80
|
90
....*....|.
gi 1017593251 112 KSVLPVFEELN 122
Cdd:cd19982 81 LPVAAVAERQK 91
|
|
| PBP1_ABC_HAAT-like |
cd19985 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
32-108 |
2.03e-09 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380640 [Multi-domain] Cd Length: 321 Bit Score: 58.44 E-value: 2.03e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNwPLFAEKARQLLSQDKVAVVFGCWTS 108
Cdd:cd19985 1 HIAVVGPMSGKSASKGKSMLRGAELYIDQINAAGGINGKKVKLDVFDDQND-PDAARKAAQIIVSDKALAVIGHYYS 76
|
|
| PBP1_ABC_HAAT-like |
cd19983 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
32-129 |
1.47e-07 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380638 [Multi-domain] Cd Length: 303 Bit Score: 52.59 E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNwPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd19983 1 RIGFVGGLTGRYSDLGVQGRNGAQLAVEEINAAGGINGRPVELIIRDDQQD-PEAAKAADRELIAGGVVAIIGHMTSAMT 79
|
90
....*....|....*...
gi 1017593251 112 KSVLPVFEELNGLLFYPV 129
Cdd:cd19983 80 VAVLPVINEAKVLMISPT 97
|
|
| PBP1_ABC_ligand_binding-like |
cd06334 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
58-224 |
3.44e-07 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380557 [Multi-domain] Cd Length: 360 Bit Score: 51.86 E-value: 3.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 58 IDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGcWTSVSRKSVLPVFEElNGLLFYPVQYEGEEM- 136
Cdd:cd06334 27 LNYVNEEGGINGVKIELEECDTGYKVPRAVACYKRLKAQDGVVAILG-WGTGDTEALAPRVAK-DKIPYISASYGRSLAd 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 137 ----SPNVFYTGAAPNQQAIPAVEYLMSEDGGS--AKRFFLLGTDYVYPRTTNKILRAFLHSKGVEDKDIEEVytPFGHS 210
Cdd:cd06334 105 dgkvFPYNFFVGATYSSQARALLKYIAQEWGGKlkGPKVAFVYHDSPFGREPIPALKAYAKELGFEVVAEQVP--SPGAL 182
|
170
....*....|....
gi 1017593251 211 DYQTIVASIKKFSA 224
Cdd:cd06334 183 DATAQWLRIRRAGP 196
|
|
| PBP1_SBP-like |
cd06327 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
32-357 |
3.70e-07 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative, gram-positive bacteria, and archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380550 [Multi-domain] Cd Length: 336 Bit Score: 51.80 E-value: 3.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMA-ISETPLKDVALMTIDEinAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVS 110
Cdd:cd06327 1 RIGVLTDLSGVYAdLSGPGSVEAAKMAVED--FGGKVLGRPIEVVSADHQNKPDVASAIAREWYDRDGVDAIVDVPNSAV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 111 RKSVLPVFEELNGLLFY----PVQYEGEEMSPNVFYTGAAPNQQAIPAVEYLMSEDGgsaKRFFLLGTDYVYPRTTNKIL 186
Cdd:cd06327 79 ALAVQKLAKEKKKIAIVtgagSSDLTGKACSPYGVHWAYDTYALARGTVKALVKQGG---KSWFFITADYAFGHSLEADA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 187 RAFLHSKGVedKDIEEVYTPFGHSDYQTIvasIKKFSAGGKTAVVSTINGDSNVPFYKELANQGLKATDVPVVAFSVGEE 266
Cdd:cd06327 156 TAAVKAAGG--KVVGSVRHPLGTTDFSSF---LLQAQASGADVIALANAGADLVNAVKQAREFGLTDGGQKLAALLLFIT 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 267 ELRGIDTKPLVGNLAA----WN-----------YFESVDNPTNQTfvaaykayakahklpNAdtvvtndpmeATYVGLHM 331
Cdd:cd06327 231 DIHALGLDAAQGLYLTtafyWDrddatrawakrFFARTGKMPTML---------------QA----------GVYSAVLH 285
|
330 340
....*....|....*....|....*.
gi 1017593251 332 WAQAVEKAGTTDVDKVRAAMAGQSFN 357
Cdd:cd06327 286 YLKAVKAAGTDDADAVVAKMREMPVN 311
|
|
| PBP1_ABC_ligand_binding-like |
cd19978 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
58-169 |
2.27e-06 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in the uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380633 [Multi-domain] Cd Length: 341 Bit Score: 49.11 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 58 IDEINAKGGVLGKKLEPVVVDPASNwPLFAEK-ARQLLSQDKVAVVFGcwtSV---SRKSVLPVFEELNGLLFYPvqYEG 133
Cdd:cd19978 28 FNEVNAQGGVNGRKIKLIALDDGYE-PDRTVKnTKKLIEEDKVFALIG---YVgtpTALAALPLANEKKIPLFGP--FTG 101
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1017593251 134 EEM-----SPNVFYTGAAPNQQAIPAVEYLMSEdgGSAKRF 169
Cdd:cd19978 102 AEFlrtpfLPYVFNLRASYADETEALVDYLVKT--LGPKRI 140
|
|
| PBP1_ABC_ligand_binding-like |
cd19979 |
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes ... |
32-350 |
2.27e-05 |
|
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380634 [Multi-domain] Cd Length: 350 Bit Score: 46.07 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 32 KVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSR 111
Cdd:cd19979 1 VIGLDADLSGGSAASGEAIKRGIQLAIDEINAAGGLLGRKLELVAKDHRGNPARGVDNLREFAADPDVLAVFGGLHSPVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 112 KSVLPVFEELNGLLFYP-------VQYEGeemSPNVFYTGAAPNQQAIPA-VEYLMSEDGgsaKRFFLLGTDYVYPRTTN 183
Cdd:cd19979 81 LAELDFIHELKIPYLVPwaaatpiTRNGY---SPNYIFRLSVDDSLAGPFlVEYALKKGC---KRPALLLENTGWGRSNL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 184 KILRAFLHSKGVEDKDIEevYTPFGHSDYQTIVASIKKFSAGGKTAVVSTINGdsnVPFYKELANQGLKatdVPVVA--- 260
Cdd:cd19979 155 KAMTKALAKKGLQPVGVE--WFNWGDTDAKPQLRALKAAGADAILLVANAPEG---AAIVKALAALPER---LPIIShwg 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017593251 261 ------FSVGEEELRGIDtkplVGNLAAWNYFESVDNPTNQTFVAAYKayakaHKLPNADTVVTNDPMEAT---YVGLHM 331
Cdd:cd19979 227 itggdfPELPREALSKID----LRFIQTFSFFDANQSPRGKQVLARYK-----RRYPVEDPESDIPAPVGFahaYDLTHL 297
|
330
....*....|....*....
gi 1017593251 332 WAQAVEKAGTTDVDKVRAA 350
Cdd:cd19979 298 LALAIEQAGSTDRAAVRAA 316
|
|
| PBP1_ABC_HAAT-like |
cd06344 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
56-126 |
1.55e-03 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380567 [Multi-domain] Cd Length: 332 Bit Score: 40.29 E-value: 1.55e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1017593251 56 MTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSRKSVLPVFEElNGLLF 126
Cdd:cd06344 23 LAVEEINAAGGVLGRKIRLVEYDDEASVDKGLAIAQRFADNPDVVAVIGHRSSYVAIPASIIYER-AGLLM 92
|
|
| |
