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Conserved domains on  [gi|1172273211|emb|CED93566|]
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Protein of unknown function (DUF3892) [Romboutsia ilealis]

Protein Classification

DUF3892 domain-containing protein( domain architecture ID 10586617)

uncharacterized DUF3892 domain-containing protein similar to Bacillus subtilis YwsA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3892 pfam13031
Protein of unknown function (DUF3892); DUF3892 is related to the truncated RNaseH ...
 29-95 1.82e-19

Protein of unknown function (DUF3892); DUF3892 is related to the truncated RNaseH fold-containing ribosome hibernation factors. Predicted to function as a possible conflict effector domain at the ribosome, based on comparable genome contextual associations with DUF2188, including repeated association with nucleotide-activated effector conflict systems.


:

Pssm-ID: 463776  Cd Length: 70  Bit Score: 74.99  E-value: 1.82e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172273211 29 TITKLVK--HDGDVVGYELSNGQRITKDEGIQMAKMGEIAGVAVAT-NKGNEYLRSLPDDNENNNLGNLP 95
Cdd:pfam13031  1 KITAVRKgnGHGRITAVKLSNGRKLSKEEAISMIENGEIAGVNVVRsKDGEKYLRTEADGIEPDNLLNLP 70
 
Name Accession Description Interval E-value
DUF3892 pfam13031
Protein of unknown function (DUF3892); DUF3892 is related to the truncated RNaseH ...
 29-95 1.82e-19

Protein of unknown function (DUF3892); DUF3892 is related to the truncated RNaseH fold-containing ribosome hibernation factors. Predicted to function as a possible conflict effector domain at the ribosome, based on comparable genome contextual associations with DUF2188, including repeated association with nucleotide-activated effector conflict systems.


Pssm-ID: 463776  Cd Length: 70  Bit Score: 74.99  E-value: 1.82e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172273211 29 TITKLVK--HDGDVVGYELSNGQRITKDEGIQMAKMGEIAGVAVAT-NKGNEYLRSLPDDNENNNLGNLP 95
Cdd:pfam13031  1 KITAVRKgnGHGRITAVKLSNGRKLSKEEAISMIENGEIAGVNVVRsKDGEKYLRTEADGIEPDNLLNLP 70
 
Name Accession Description Interval E-value
DUF3892 pfam13031
Protein of unknown function (DUF3892); DUF3892 is related to the truncated RNaseH ...
 29-95 1.82e-19

Protein of unknown function (DUF3892); DUF3892 is related to the truncated RNaseH fold-containing ribosome hibernation factors. Predicted to function as a possible conflict effector domain at the ribosome, based on comparable genome contextual associations with DUF2188, including repeated association with nucleotide-activated effector conflict systems.


Pssm-ID: 463776  Cd Length: 70  Bit Score: 74.99  E-value: 1.82e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172273211 29 TITKLVK--HDGDVVGYELSNGQRITKDEGIQMAKMGEIAGVAVAT-NKGNEYLRSLPDDNENNNLGNLP 95
Cdd:pfam13031  1 KITAVRKgnGHGRITAVKLSNGRKLSKEEAISMIENGEIAGVNVVRsKDGEKYLRTEADGIEPDNLLNLP 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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