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Conserved domains on  [gi|345530514|emb|CCB70544|]
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30S ribosomal protein S4 [Flavobacterium branchiophilum FL-15]

Protein Classification

30S ribosomal protein S4( domain architecture ID 11480735)

30S ribosomal protein S4 binds directly to 16S rRNA and plays an important role in translational accuracy

Gene Ontology:  GO:0003735|GO:0006412|GO:0019843

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-201 1.47e-124

30S ribosomal protein S4; Validated


:

Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 349.79  E-value: 1.47e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514   1 MARYTGPKTKIARKFGEAIFGDDKAFEKRNYPPGQHGLAKKRGKKSEYAVQLMEKQKAKYSYGILEKQFRNLFEKASATK 80
Cdd:PRK05327   1 MARYTGPKCKLSRRLGVDLFKSGKRCLKRKYPPGQHGQRRRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAARRK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514  81 GVTGEVLLQLCEARLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLKAGDVVAVREKSKSLETIDRSLSNSS 160
Cdd:PRK05327  81 GNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEALELAE 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 345530514 161 H--VYEWITWNNDKKEGTFVSVPARIQIPENIKEQLIVELYNK 201
Cdd:PRK05327 161 RrgVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
 
Name Accession Description Interval E-value
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-201 1.47e-124

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 349.79  E-value: 1.47e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514   1 MARYTGPKTKIARKFGEAIFGDDKAFEKRNYPPGQHGLAKKRGKKSEYAVQLMEKQKAKYSYGILEKQFRNLFEKASATK 80
Cdd:PRK05327   1 MARYTGPKCKLSRRLGVDLFKSGKRCLKRKYPPGQHGQRRRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAARRK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514  81 GVTGEVLLQLCEARLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLKAGDVVAVREKSKSLETIDRSLSNSS 160
Cdd:PRK05327  81 GNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEALELAE 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 345530514 161 H--VYEWITWNNDKKEGTFVSVPARIQIPENIKEQLIVELYNK 201
Cdd:PRK05327 161 RrgVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-201 3.66e-124

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 348.60  E-value: 3.66e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514   1 MARYTGPKTKIARKFGEAIFG---DDKAFEKRNYPPGQHGlaKKRGKKSEYAVQLMEKQKAKYSYGILEKQFRNLFEKAS 77
Cdd:COG0522    1 MARYTGPKCKLCRREGVKLFLkgeRKCALERRPYPPGQHG--QRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFEEAA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514  78 ATKGVTGEVLLQLCEARLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLKAGDVVAVREKSKSLETIDRSLS 157
Cdd:COG0522   79 RRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEALE 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 345530514 158 NSSH--VYEWITWNNDKKEGTFVSVPARIQIPENIKEQLIVELYNK 201
Cdd:COG0522  159 SAEQrgVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-201 1.49e-89

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 261.08  E-value: 1.49e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514    3 RYTGPKTKIARKFGEAIFGDDKAFE-KRNYPPGQHGlaKKRGKKSEYAVQLMEKQKAKYSYGILEKQFRNLFEKASATKG 81
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGKSRKLLlKRKYPPGQHG--QRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLKG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514   82 VTGEVLLQLCEARLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLKAGDVVAVREKSKSLETIDRSLSN--S 159
Cdd:TIGR01017  79 NTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETngQ 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 345530514  160 SHVYEWITWNNDKKEGTFVSVPARIQIPENIKEQLIVELYNK 201
Cdd:TIGR01017 159 RNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-92 9.05e-34

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 115.72  E-value: 9.05e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514    3 RYTGPKTKIARKFGEAIFGDDK-------AFEKRNYP--PGQHGlakKRGKKSEYAVQLMEKQKAKYSYGILEKQFRNLF 73
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRchrelkvAQNRREYPkyPGQHG---KIRKLSEYLLQLREKQKVRRKYGLLEKQLRKLY 77

                          90
                  ....*....|....*....
gi 345530514   74 EKASATKGVTGEVLLQLCE 92
Cdd:pfam00163  78 DMGLKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 94-153 2.76e-19

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 77.67  E-value: 2.76e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514  94 RLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLKAGDVVAVREKSKSLETID 153
Cdd:cd00165    2 RLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVY 61
S4 smart00363
S4 RNA-binding domain;
94-148 7.27e-17

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 71.08  E-value: 7.27e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 345530514    94 RLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLKAGDVVAVREKSKS 148
Cdd:smart00363   2 RLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
 
Name Accession Description Interval E-value
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-201 1.47e-124

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 349.79  E-value: 1.47e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514   1 MARYTGPKTKIARKFGEAIFGDDKAFEKRNYPPGQHGLAKKRGKKSEYAVQLMEKQKAKYSYGILEKQFRNLFEKASATK 80
Cdd:PRK05327   1 MARYTGPKCKLSRRLGVDLFKSGKRCLKRKYPPGQHGQRRRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAARRK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514  81 GVTGEVLLQLCEARLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLKAGDVVAVREKSKSLETIDRSLSNSS 160
Cdd:PRK05327  81 GNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEALELAE 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 345530514 161 H--VYEWITWNNDKKEGTFVSVPARIQIPENIKEQLIVELYNK 201
Cdd:PRK05327 161 RrgVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-201 3.66e-124

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 348.60  E-value: 3.66e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514   1 MARYTGPKTKIARKFGEAIFG---DDKAFEKRNYPPGQHGlaKKRGKKSEYAVQLMEKQKAKYSYGILEKQFRNLFEKAS 77
Cdd:COG0522    1 MARYTGPKCKLCRREGVKLFLkgeRKCALERRPYPPGQHG--QRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFEEAA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514  78 ATKGVTGEVLLQLCEARLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLKAGDVVAVREKSKSLETIDRSLS 157
Cdd:COG0522   79 RRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEALE 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 345530514 158 NSSH--VYEWITWNNDKKEGTFVSVPARIQIPENIKEQLIVELYNK 201
Cdd:COG0522  159 SAEQrgVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-201 1.49e-89

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 261.08  E-value: 1.49e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514    3 RYTGPKTKIARKFGEAIFGDDKAFE-KRNYPPGQHGlaKKRGKKSEYAVQLMEKQKAKYSYGILEKQFRNLFEKASATKG 81
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGKSRKLLlKRKYPPGQHG--QRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLKG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514   82 VTGEVLLQLCEARLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLKAGDVVAVREKSKSLETIDRSLSN--S 159
Cdd:TIGR01017  79 NTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETngQ 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 345530514  160 SHVYEWITWNNDKKEGTFVSVPARIQIPENIKEQLIVELYNK 201
Cdd:TIGR01017 159 RNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-199 6.17e-61

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 188.50  E-value: 6.17e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514   1 MARYTGPKTKIARKFGEAifgddKAFEKRNYPPGQHGLAKKR-GKKSEYAVQLMEKQKAKYSYGILEKQFRNLFEKASAT 79
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGAL-----PGLTSKTPRPGSDLRNQSRsGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKA 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514  80 KGVTGEVLLQLCEARLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLKAGDVVAVREKSKSLETIDRSLSNS 159
Cdd:CHL00113  76 KGSTGQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESS 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 345530514 160 SH--VYEWITWNNDKKEGTFVSVPARIQIPENIKEQLIVELY 199
Cdd:CHL00113 156 PReeLPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYY 197
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-92 9.05e-34

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 115.72  E-value: 9.05e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514    3 RYTGPKTKIARKFGEAIFGDDK-------AFEKRNYP--PGQHGlakKRGKKSEYAVQLMEKQKAKYSYGILEKQFRNLF 73
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRchrelkvAQNRREYPkyPGQHG---KIRKLSEYLLQLREKQKVRRKYGLLEKQLRKLY 77

                          90
                  ....*....|....*....
gi 345530514   74 EKASATKGVTGEVLLQLCE 92
Cdd:pfam00163  78 DMGLKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 94-153 2.76e-19

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 77.67  E-value: 2.76e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 345530514  94 RLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLKAGDVVAVREKSKSLETID 153
Cdd:cd00165    2 RLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVY 61
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 94-140 1.05e-17

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 72.91  E-value: 1.05e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 345530514   94 RLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLKAGDVV 140
Cdd:pfam01479   2 RLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
S4 smart00363
S4 RNA-binding domain;
94-148 7.27e-17

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 71.08  E-value: 7.27e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 345530514    94 RLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLKAGDVVAVREKSKS 148
Cdd:smart00363   2 RLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
rps4p PRK04051
30S ribosomal protein S4P; Validated
 92-132 1.20e-09

30S ribosomal protein S4P; Validated


Pssm-ID: 179730 [Multi-domain]  Cd Length: 177  Bit Score: 54.88  E-value: 1.20e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 345530514  92 EARLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSY 132
Cdd:PRK04051 102 ERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSY 142
uS4_arch TIGR01018
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ...
 92-132 8.84e-09

ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273397 [Multi-domain]  Cd Length: 162  Bit Score: 52.43  E-value: 8.84e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 345530514   92 EARLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSY 132
Cdd:TIGR01018 103 ERRLQTQVYKKGLARTIHQARQLIVHGHIAVNGRVVTSPSY 143
PLN00189 PLN00189
40S ribosomal protein S9; Provisional
 92-135 1.57e-06

40S ribosomal protein S9; Provisional


Pssm-ID: 177783 [Multi-domain]  Cd Length: 194  Bit Score: 46.67  E-value: 1.57e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 345530514  92 EARLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLK 135
Cdd:PLN00189 108 ERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGKQIVNVPSFMVR 151
PTZ00155 PTZ00155
40S ribosomal protein S9; Provisional
 62-132 1.78e-06

40S ribosomal protein S9; Provisional


Pssm-ID: 185484 [Multi-domain]  Cd Length: 181  Bit Score: 46.23  E-value: 1.78e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 345530514  62 YGILEKQFRNLfekasatKGVTGEVLLQLCEARLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSY 132
Cdd:PTZ00155  83 LGLLDEDERKL-------DYVLGLTVEKLLERRLQTKVFKLGLAKSIHHARVLIRQRHIRVGKQIVDIPSF 146
RsuA COG1187
Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605 [Translation, ...
 94-142 5.74e-06

Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605 [Translation, ribosomal structure and biogenesis]; Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605 is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440800 [Multi-domain]  Cd Length: 226  Bit Score: 45.41  E-value: 5.74e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 345530514  94 RLDNVVFRMGIApSRRAARQIVSHRHITVNGECVNIPSYHLKAGDVVAV 142
Cdd:COG1187    4 RLQKFLANAGVG-SRREAEELIEAGRVTVNGKVVTELGTKVDPGDEVTV 51
TyrS COG0162
Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Tyrosyl-tRNA ...
 66-138 9.54e-03

Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Tyrosyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439932 [Multi-domain]  Cd Length: 409  Bit Score: 36.16  E-value: 9.54e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 345530514  66 EKQFRNLFEKASATKGV-TGEVLLQLCEARLDNVVFRMGIAPSRRAARQIVSHRHITVNGECVNIPSYHLKAGD 138
Cdd:COG0162  314 EEAFEALFGKGELPDDLpEVELSAAEGGIPLVDLLVEAGLAASKSEARRLIKQGGVSVNGEKVTDPDAVLTAGD 387
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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