|
Name |
Accession |
Description |
Interval |
E-value |
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
190-1493 |
0e+00 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 2158.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 190 EDYPDYHRSPRIIYRAPEEKISMAKPSSKPSKPTDGLIKIILPPLIMVAITVMISIFQPRGLYIIMTIAMSAVTITMAIL 269
Cdd:TIGR03928 1 KDYPDYHRSPRIIYEEPTDKVKISKPPQEPDKPKRGLLRIILPPLVMIAVTVLISIFQPRGIFIIASIAMSLVTIIFSTT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 270 NYIKSRKKYKIDSKQRVESYDLYLKRKTKELHETSEKQRHALTYHYPDVTELEKMALRVDSRIYEKTMFHHDFLTFRVGR 349
Cdd:TIGR03928 81 TYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHYHNPSVEELKEMVENVNSRIWEKTPEHHDFLHVRLGT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 350 GDETSSFSVEFQQEEFSQEKDELVEEAVKIKGQYLSINEVPVATDLMHGPVGYIGPRRLVLEQLQMLVMQTSLFHSYYDL 429
Cdd:TIGR03928 161 GNVPSSFEIKFPEEEFSQRKDELLDEAQELKEKYNTIENVPIVLDLSNGPIGYVGKRSLVLEELQNLVGQLAFFHSYHDV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 430 QFITIFPEEEKADWDWMRWLPHANMRDVNVRGFVYHERSRDQVLNSLYQILKERKQALtEQASKQEKLYFTPHYVVLITD 509
Cdd:TIGR03928 241 QFVTIFPEEEKKKWEWMRWLPHFWLRDINVRGFVYNERTRDQLLNSLYQILKERKLAL-DDANSKEKKRFSPHYVFLITD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 510 EKLVLDHTVMEFFNEDPSELGVSLVFVQDVMESLPEHVKTVVDIRDAKSGNIILEQGDLVNRAFVPDHLpADFDKEVISR 589
Cdd:TIGR03928 320 RKLILDHVIMEYLNEDPSELGISLIFVQDVMESLPENVKTVIDIKNRNEGEIVLEEGELVEKSFTPDHL-DNEDLEEYSR 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 590 ALAPLNHLQNLKNSIPESVTFLEMYGVERVEELNIAGRWAKNETYKSLAVPLGLRGKDDIVQLNLHEKAHGPHGLVAGTT 669
Cdd:TIGR03928 399 TLAPLNHLQNLKNSIPESVTFLEMYGVKKVEELNIQERWAKNETYKSLAVPIGLRGKDDIVYLNLHEKAHGPHGLVAGTT 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 670 GSGKSEIIQSYIISLGVNFHPYEVAFLLIDYKGGGMANLFKNMPHLLGTITNLDGAQSMRALASIKAELQKRQRLFGEHD 749
Cdd:TIGR03928 479 GSGKSEILQTYILSLAVNFHPHEVAFLLIDYKGGGMANLFKNLPHLLGTITNLDGAQSMRALASIKAELKKRQRLFGENN 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 750 VNHINQYQKLYKQGKATEPMPHLFLISDEFAELKSEQPEFMKELVSTARIGRSLGIHLILATQKPSGVVDDQIWSNSKFK 829
Cdd:TIGR03928 559 VNHINQYQKLYKQGKAKEPMPHLFLISDEFAELKSEQPEFMKELVSTARIGRSLGVHLILATQKPSGVVDDQIWSNSRFK 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 830 LALKVQNASDSNEILKTPDAAEITLPGRSYLQVGNNEIYELFQSAWSGADYVPDKESTDYIDttIYAINDLGQYDILTED 909
Cdd:TIGR03928 639 LALKVQDASDSNEILKTPDAAEITVPGRAYLQVGNNEVYELFQSAWSGAPYDPDKDKKEEED--IYMINDLGQYELLNED 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 910 LSGLDKKDDLTKLPSELDAVIDHIHEYTEASGIEALPRPWLPPLEEQIFLPELHQVITDELWSGEKQPLQATIGFLDIPQ 989
Cdd:TIGR03928 717 LSGLKRKKEIKEVPTELEAVIDEIQAYTEELNIEALPSPWLPPLEEKIYLDDLHAVEFDKLWSKPKEPLQATIGLLDDPE 796
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 990 MQAQEPLTIDLAKDGHLAVFSSPGYGKSTFLQTITMDLARQHNPERLHIYLLDLGTNGLLPLKKLPHVADTIMVDEEIKI 1069
Cdd:TIGR03928 797 LQSQEPLTLDLSKDGHLAIFGSPGYGKSTFLQTLIMSLARQHSPEQLHFYLFDFGTNGLLPLKKLPHVADYFTLDEEEKI 876
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1070 GKLIRRLTLELKERKQKLSKYGVASISMYEKASKEEVPAILLVIDAFDSVGEAPYKDVFEKLIAQIAREGASVGIHLVMS 1149
Cdd:TIGR03928 877 EKLIRRIKKEIDRRKKLFSEYGVASISMYNKASGEKLPQIVIIIDNYDAVKEEPFYEDFEELLIQLAREGASLGIYLVMT 956
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1150 AVRQNAIRVQMLASIKHQIPLFMIEPGESRSIVGKTDLTIEELPGRGLVKLEEPTVFQTALPVCADGTLEIIEKIQAESE 1229
Cdd:TIGR03928 957 AGRQNAVRMPLMNNIKTKIALYLIDKSEYRSIVGRTKFTIEEIPGRGLIKKDEPTLFQTALPVKGEDDLEVIENIKAEIQ 1036
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1230 AMSSEWNGSRPAPIPMVPEVINMLEYLENKQVQKSLSEGKTPIAVDFEDVLPVNLDVQTDGNTLVLTDNADVLERTMVSL 1309
Cdd:TIGR03928 1037 KMNEAWTGERPKPIPMVPEELSLEEFRERYEVRKILEEGSIPIGLDEETVEPVYIDLTENPHLLIVGESDDGKTNVLKSL 1116
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1310 TELIGQNMEVDIALYDNSSNRFQQYRNN--VNIYAGEETAMNSTSEQIVSVLEAREDGWKEIQRASNGEITLKMYVeelr 1387
Cdd:TIGR03928 1117 LKTLAKQEKEKIGLIDSIDRGLLAYRDLkeVATYIEEKEDLKEILAELKEEIELREAAYKEALQNETGEPAFKPIL---- 1192
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1388 pmyVLLTDSIYAAEQMSLEARKNMVRLIENGPKLGIYFVTGSQTGILYRARDEISGELRKQKTGILLGRISDQNILSlIN 1467
Cdd:TIGR03928 1193 ---LIIDDLEDFIQRTDLEIQDILALIMKNGKKLGIHFIVAGTHSELSKSYDGVPKEIKQLRTGILGMRKSDQSFFK-LP 1268
|
1290 1300
....*....|....*....|....*.
gi 404234931 1468 NIYKEALLAPYEAYYIKQGQYEKIKL 1493
Cdd:TIGR03928 1269 FTRSEKELEPGEGYFVVNGKYQKIKI 1294
|
|
| FtsK_SpoIIIE_N |
pfam12538 |
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 ... |
6-108 |
3.45e-30 |
|
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 amino acids in length. The family is found in association with pfam01580. The FtsK/SpoIIIE family of DNA transporters are responsible for translocating missegregated chromosomes after the completion of cell division.
Pssm-ID: 372173 Cd Length: 115 Bit Score: 115.95 E-value: 3.45e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 6 LLIVSNGQQCHKNHLSPEKVVTIGNTIEHEITYPELAESIEVKYDEGS-------WNAGTTALQANQAVNVEN-----LA 73
Cdd:pfam12538 1 LLWVFYDDQYQKLNLDDLKTVTIGNDEEHDVTIPSLEGVIELKWDEDGgqylvyqGGEGLQTLEINKSFEVKEdgkdlTL 80
|
90 100 110
....*....|....*....|....*....|....*
gi 404234931 74 FYLCQDLHTQVYDVVTNISVTFGVGIENDVTLDDT 108
Cdd:pfam12538 81 ILVGEAPSTSVYYIGNRDEITISSEEYADIVLQST 115
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
634-815 |
7.28e-27 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 110.16 E-value: 7.28e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 634 YKSLAVPLGLRGKDDIVQLNLheKAHGPHGLVAGTTGSGKSEIIQSYIISLGVNFHPYEVAFLLIDYKGGGMANLFKnMP 713
Cdd:pfam01580 14 YSRLPIALGKDISGNPEVFDL--KKMPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKMGELSAYED-IP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 714 HLLGT--ITNLDGAqsMRALASIKAELQKRQRLFGEHDVNHINQYQKLYK----------------------QGKATEPM 769
Cdd:pfam01580 91 HLLSVpvATDPKRA--LRALEWLVDEMERRYALFRALGVRSIAGYNGEIAedpldgfgdvflviygvhvmctAGRWLEIL 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 404234931 770 PHLFLISDEFAELKSEQPEFMKELVST-----ARIGRSLGIHLILATQKPS 815
Cdd:pfam01580 169 PYLVVIVDERAELRLAAPKDSEMRVEDaivrlAQKGRAAGIHLLLATQRPS 219
|
|
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
661-819 |
4.67e-24 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 108.86 E-value: 4.67e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 661 PHGLVAGTTGSGKSEIIQSYIISLGVNFHPYEVAFLLIDYKgggMA--NLFKNMPHLLG-TITNLDGAQSmrALASIKAE 737
Cdd:COG1674 282 PHLLIAGATGSGKSVCINAMILSLLYKATPDEVRLILIDPK---MVelSVYNGIPHLLTpVVTDPKKAAN--ALKWAVRE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 738 LQKRQRLFGEHDVNHINQYQKLYKQGKAT-------EPMPHLFLISDEFAELkseqpefM----KElV--STARI---GR 801
Cdd:COG1674 357 MERRYKLFAKAGVRNIAGYNEKVREAKAKgeeeeglEPLPYIVVIIDELADL-------MmvagKE-VeeAIARLaqkAR 428
|
170
....*....|....*...
gi 404234931 802 SLGIHLILATQKPSgvVD 819
Cdd:COG1674 429 AAGIHLILATQRPS--VD 444
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
645-844 |
1.05e-19 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 96.31 E-value: 1.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 645 GKDDIVQLNLHEKAHGPHGLVAGTTGSGKSEIIQSYIISLGVNFHPYEVAFLLIDYKgggMANL--FKNMPHLLG-TITN 721
Cdd:PRK10263 995 GKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPK---MLELsvYEGIPHLLTeVVTD 1071
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 722 L-DGAQSMRALASikaELQKRQRLFGEHDVNHINQYQK---------------LYKQGKAT-------EPMPHLFLISDE 778
Cdd:PRK10263 1072 MkDAANALRWCVN---EMERRYKLMSALGVRNLAGYNEkiaeadrmmrpipdpYWKPGDSMdaqhpvlKKEPYIVVLVDE 1148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 404234931 779 FAELKSEQPEFMKELVST-ARIGRSLGIHLILATQKPS-GVVDDQIWSNSKFKLALKVQNASDSNEIL 844
Cdd:PRK10263 1149 FADLMMTVGKKVEELIARlAQKARAAGIHLVLATQRPSvDVITGLIKANIPTRIAFTVSSKIDSRTIL 1216
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
662-832 |
3.29e-05 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 45.29 E-value: 3.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 662 HGLVAGTTGSGKSEiiqsYIISLGVNFHPYEVAFLLIDYKGggmaNLFKNMPhllgtitnlDGAQSMRALASikaelqkr 741
Cdd:cd01127 1 NTLVLGTTGSGKTT----SIVIPLLDQAARGGSVIITDPKG----ELFLVIP---------DRDDSFAALRA-------- 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 742 qrLFgehdVNHINQ--YQKLYKQGKATEpmPHLFLISDEFAELKSeqPEFMKELVSTariGRSLGIHLILATQ------K 813
Cdd:cd01127 56 --LF----FNQLFRalTELASLSPGRLP--RRVWFILDEFANLGR--IPNLPNLLAT---GRKRGISVVLILQslaqleA 122
|
170 180
....*....|....*....|
gi 404234931 814 PSGVVDDQ-IWSNSKFKLAL 832
Cdd:cd01127 123 VYGKDGAQtILGNCNTKLYL 142
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
190-1493 |
0e+00 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 2158.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 190 EDYPDYHRSPRIIYRAPEEKISMAKPSSKPSKPTDGLIKIILPPLIMVAITVMISIFQPRGLYIIMTIAMSAVTITMAIL 269
Cdd:TIGR03928 1 KDYPDYHRSPRIIYEEPTDKVKISKPPQEPDKPKRGLLRIILPPLVMIAVTVLISIFQPRGIFIIASIAMSLVTIIFSTT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 270 NYIKSRKKYKIDSKQRVESYDLYLKRKTKELHETSEKQRHALTYHYPDVTELEKMALRVDSRIYEKTMFHHDFLTFRVGR 349
Cdd:TIGR03928 81 TYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHYHNPSVEELKEMVENVNSRIWEKTPEHHDFLHVRLGT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 350 GDETSSFSVEFQQEEFSQEKDELVEEAVKIKGQYLSINEVPVATDLMHGPVGYIGPRRLVLEQLQMLVMQTSLFHSYYDL 429
Cdd:TIGR03928 161 GNVPSSFEIKFPEEEFSQRKDELLDEAQELKEKYNTIENVPIVLDLSNGPIGYVGKRSLVLEELQNLVGQLAFFHSYHDV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 430 QFITIFPEEEKADWDWMRWLPHANMRDVNVRGFVYHERSRDQVLNSLYQILKERKQALtEQASKQEKLYFTPHYVVLITD 509
Cdd:TIGR03928 241 QFVTIFPEEEKKKWEWMRWLPHFWLRDINVRGFVYNERTRDQLLNSLYQILKERKLAL-DDANSKEKKRFSPHYVFLITD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 510 EKLVLDHTVMEFFNEDPSELGVSLVFVQDVMESLPEHVKTVVDIRDAKSGNIILEQGDLVNRAFVPDHLpADFDKEVISR 589
Cdd:TIGR03928 320 RKLILDHVIMEYLNEDPSELGISLIFVQDVMESLPENVKTVIDIKNRNEGEIVLEEGELVEKSFTPDHL-DNEDLEEYSR 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 590 ALAPLNHLQNLKNSIPESVTFLEMYGVERVEELNIAGRWAKNETYKSLAVPLGLRGKDDIVQLNLHEKAHGPHGLVAGTT 669
Cdd:TIGR03928 399 TLAPLNHLQNLKNSIPESVTFLEMYGVKKVEELNIQERWAKNETYKSLAVPIGLRGKDDIVYLNLHEKAHGPHGLVAGTT 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 670 GSGKSEIIQSYIISLGVNFHPYEVAFLLIDYKGGGMANLFKNMPHLLGTITNLDGAQSMRALASIKAELQKRQRLFGEHD 749
Cdd:TIGR03928 479 GSGKSEILQTYILSLAVNFHPHEVAFLLIDYKGGGMANLFKNLPHLLGTITNLDGAQSMRALASIKAELKKRQRLFGENN 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 750 VNHINQYQKLYKQGKATEPMPHLFLISDEFAELKSEQPEFMKELVSTARIGRSLGIHLILATQKPSGVVDDQIWSNSKFK 829
Cdd:TIGR03928 559 VNHINQYQKLYKQGKAKEPMPHLFLISDEFAELKSEQPEFMKELVSTARIGRSLGVHLILATQKPSGVVDDQIWSNSRFK 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 830 LALKVQNASDSNEILKTPDAAEITLPGRSYLQVGNNEIYELFQSAWSGADYVPDKESTDYIDttIYAINDLGQYDILTED 909
Cdd:TIGR03928 639 LALKVQDASDSNEILKTPDAAEITVPGRAYLQVGNNEVYELFQSAWSGAPYDPDKDKKEEED--IYMINDLGQYELLNED 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 910 LSGLDKKDDLTKLPSELDAVIDHIHEYTEASGIEALPRPWLPPLEEQIFLPELHQVITDELWSGEKQPLQATIGFLDIPQ 989
Cdd:TIGR03928 717 LSGLKRKKEIKEVPTELEAVIDEIQAYTEELNIEALPSPWLPPLEEKIYLDDLHAVEFDKLWSKPKEPLQATIGLLDDPE 796
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 990 MQAQEPLTIDLAKDGHLAVFSSPGYGKSTFLQTITMDLARQHNPERLHIYLLDLGTNGLLPLKKLPHVADTIMVDEEIKI 1069
Cdd:TIGR03928 797 LQSQEPLTLDLSKDGHLAIFGSPGYGKSTFLQTLIMSLARQHSPEQLHFYLFDFGTNGLLPLKKLPHVADYFTLDEEEKI 876
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1070 GKLIRRLTLELKERKQKLSKYGVASISMYEKASKEEVPAILLVIDAFDSVGEAPYKDVFEKLIAQIAREGASVGIHLVMS 1149
Cdd:TIGR03928 877 EKLIRRIKKEIDRRKKLFSEYGVASISMYNKASGEKLPQIVIIIDNYDAVKEEPFYEDFEELLIQLAREGASLGIYLVMT 956
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1150 AVRQNAIRVQMLASIKHQIPLFMIEPGESRSIVGKTDLTIEELPGRGLVKLEEPTVFQTALPVCADGTLEIIEKIQAESE 1229
Cdd:TIGR03928 957 AGRQNAVRMPLMNNIKTKIALYLIDKSEYRSIVGRTKFTIEEIPGRGLIKKDEPTLFQTALPVKGEDDLEVIENIKAEIQ 1036
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1230 AMSSEWNGSRPAPIPMVPEVINMLEYLENKQVQKSLSEGKTPIAVDFEDVLPVNLDVQTDGNTLVLTDNADVLERTMVSL 1309
Cdd:TIGR03928 1037 KMNEAWTGERPKPIPMVPEELSLEEFRERYEVRKILEEGSIPIGLDEETVEPVYIDLTENPHLLIVGESDDGKTNVLKSL 1116
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1310 TELIGQNMEVDIALYDNSSNRFQQYRNN--VNIYAGEETAMNSTSEQIVSVLEAREDGWKEIQRASNGEITLKMYVeelr 1387
Cdd:TIGR03928 1117 LKTLAKQEKEKIGLIDSIDRGLLAYRDLkeVATYIEEKEDLKEILAELKEEIELREAAYKEALQNETGEPAFKPIL---- 1192
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1388 pmyVLLTDSIYAAEQMSLEARKNMVRLIENGPKLGIYFVTGSQTGILYRARDEISGELRKQKTGILLGRISDQNILSlIN 1467
Cdd:TIGR03928 1193 ---LIIDDLEDFIQRTDLEIQDILALIMKNGKKLGIHFIVAGTHSELSKSYDGVPKEIKQLRTGILGMRKSDQSFFK-LP 1268
|
1290 1300
....*....|....*....|....*.
gi 404234931 1468 NIYKEALLAPYEAYYIKQGQYEKIKL 1493
Cdd:TIGR03928 1269 FTRSEKELEPGEGYFVVNGKYQKIKI 1294
|
|
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
225-880 |
3.60e-88 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 301.89 E-value: 3.60e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 225 GLIKIILPPLIMVAITVMISIF--------QPRGLYIIMTIAMSAVTiTMAILNYIKSRKKYKIDsKQRVEsYDLYLKRK 296
Cdd:TIGR03924 2 PLLQKLLPVVMVVAVVGMVVMMfasggrqrNPMFLIFPLMMLVSMLG-MLAGGRGGGGKKTPELD-EDRRD-YLRYLDQL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 297 TKELHETSEKQRHALTYHYPDVTELEkmALRVDSRIYEKTMFHHDFLTFRVGRGDETSSFSVEFQQeefSQEKDEL---- 372
Cdd:TIGR03924 79 RREVRETAAAQRAALEWRHPDPDTLW--ALVGTPRMWERRPGDPDFLEVRVGVGVQPLATRLVVPE---TGPVEDLepvt 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 373 ---VEEAVKikgQYLSINEVPVATDLM-HGPVGYIGPRRLVLEQLQMLVMQTSLFHSYYDLQfITIFPEEEKADWDWMRW 448
Cdd:TIGR03924 154 avaLRRFLR---AHSTVPDLPVAVSLRgFARISLVGDRDQARALARAMLCQLAVFHGPDDVG-IAVVTSDPDRDWDWLKW 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 449 LPHA---NMRD--VNVRgFVYHerSRDQVLNSLYQILKERKQALTEQASKQeklyftPHyVVLITDEKLVLDHTvmEFFN 523
Cdd:TIGR03924 230 LPHNqhpTRFDaaGPAR-LVYT--SLAELEAALAELLADRGRFSPDDAASL------PH-LVVVVDGGDLPGWE--DLIG 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 524 EDPSElGVSLVFVQDVMESLPEHVKTVVDIRDAKsgnIILEQGDLVNRAFV-PDHLPADfDKEVISRALAPLNHLQNLKN 602
Cdd:TIGR03924 298 ESGLD-GVTVIDLGGSLPGLPDRRGLRLVVEADR---LDARTADGVEEFGVaPDQLSIA-EAEALARRLARWRAATAGTV 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 603 SIPESV--TFLEMYGVERVEELNIAGRWAKNETYKSLAVPLGLRGKDDIVQLNLHEKAH---GPHGLVAGTTGSGKSEII 677
Cdd:TIGR03924 373 DAPLTGarDLLELLGIGDPATLDVDRLWRPRPGRDRLRVPIGVGDDGEPVELDLKESAEggmGPHGLCIGATGSGKSELL 452
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 678 QSYIISLGVNFHPYEVAFLLIDYKGGGMANLFKNMPHLLGTITNLDGAQSM--RALASIKAELQKRQRLFGEH-DVNHIN 754
Cdd:TIGR03924 453 RTLVLGLAATHSPEQLNLVLVDFKGGATFLGLEGLPHVSAVITNLADEAPLvdRMQDALAGEMNRRQELLRAAgNFANVA 532
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 755 QYQKLYKQGKATEPMPHLFLISDEFAELKSEQPEFMKELVSTARIGRSLGIHLILATQKPSGVVDDQIWSNSKFKLALKV 834
Cdd:TIGR03924 533 EYEKARAAGADLPPLPALFVVVDEFSELLSQHPDFADLFVAIGRLGRSLGVHLLLASQRLDEGRLRGLESHLSYRIGLKT 612
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 404234931 835 QNASDSNEILKTPDAAEI-TLPGRSYLQVGNNEIyELFQSAWSGADY 880
Cdd:TIGR03924 613 FSASESRAVLGVPDAYHLpSTPGAGYLKVDTAEP-VRFRAAYVSGPY 658
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
924-1454 |
5.92e-47 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 178.65 E-value: 5.92e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 924 SELDAVIDHIheytEASGIEAlPRPWLPPLEEQIFLPEL---HQVITDELWSGEKQPLQATIGFLDIPQMQAQEPLTIDL 1000
Cdd:TIGR03925 1 TVLDVVVDRL----AGQGPPA-HQVWLPPLPEPPALDDLlprLDVDPWRVDYGQRGRLTVPVGIVDRPFEQRQDPLVVDL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1001 -AKDGHLAVFSSPGYGKSTFLQTITMDLARQHNPERLHIYLLDLGTNGLLPLKKLPHVADTIMVDEEIKIGKLIRRLTLE 1079
Cdd:TIGR03925 76 sGAAGHVAIVGAPQSGKSTALRTLILALALTHTPEEVQFYCLDFGGGGLASLADLPHVGGVAGRLDPERVRRTVAEVEGL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1080 LKERKQKLSKYGVASISMY-EKASKEEVPA-----ILLVIDAFDSVgEAPYKDVFEKLIAqIAREGASVGIHLVMSAVRQ 1153
Cdd:TIGR03925 156 LRRRERLFRTHGIDSMAQYrARRAAGRLPEdpfgdVFLVIDGWGTL-RQDFEDLEDKVTD-LAARGLAYGVHVVLTASRW 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1154 NAIRVQMLASIKHQIPLFMIEPGESRSIVGKTDLTIEELPGRGLV--KLEeptvFQTALPVCADGTLEIIEKIQAESEAM 1231
Cdd:TIGR03925 234 SEIRPALRDLIGTRIELRLGDPMDSEIDRRAAARVPAGRPGRGLTpdGLH----MLIALPRLDGIASVDDLGTRGLVAVI 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1232 SSEWNGSRPAPIPMVPEVInMLEYLENKQVQKSLSegkTPIAVDFEDVLPVNLDVQTDGNTLVLTDNA---DVLERTMV- 1307
Cdd:TIGR03925 310 RDVWGGPPAPPVRLLPARL-PLSALPAGGGAPRLR---VPLGLGESDLAPVYVDFAESPHLLIFGDSEsgkTTLLRTIAr 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1308 SLTELIGQNmEVDIALYDnssnrfqqYR---------NNVNIYAGEETAMNSTSEQIVSVLEAREDGwkeiqrasnGEIT 1378
Cdd:TIGR03925 386 GIVRRYSPD-QARLVVVD--------YRrtllgavpeDYLAGYAATSAALTELIAALAALLERRLPG---------PDVT 447
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1379 lkmyVEELRP--------MYVLLTD--SIYAAEQMSLearKNMVRLIENGPKLGIYFVTGSQTGILYRAR-DEISGELRK 1447
Cdd:TIGR03925 448 ----PQQLRArswwsgpeIYVVVDDydLVATGSGNPL---APLVELLPHARDIGLHVVVARRSGGAARALmDPVLARLKD 520
|
....*..
gi 404234931 1448 QKTGILL 1454
Cdd:TIGR03925 521 LGAPGLL 527
|
|
| FtsK_SpoIIIE_N |
pfam12538 |
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 ... |
6-108 |
3.45e-30 |
|
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 amino acids in length. The family is found in association with pfam01580. The FtsK/SpoIIIE family of DNA transporters are responsible for translocating missegregated chromosomes after the completion of cell division.
Pssm-ID: 372173 Cd Length: 115 Bit Score: 115.95 E-value: 3.45e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 6 LLIVSNGQQCHKNHLSPEKVVTIGNTIEHEITYPELAESIEVKYDEGS-------WNAGTTALQANQAVNVEN-----LA 73
Cdd:pfam12538 1 LLWVFYDDQYQKLNLDDLKTVTIGNDEEHDVTIPSLEGVIELKWDEDGgqylvyqGGEGLQTLEINKSFEVKEdgkdlTL 80
|
90 100 110
....*....|....*....|....*....|....*
gi 404234931 74 FYLCQDLHTQVYDVVTNISVTFGVGIENDVTLDDT 108
Cdd:pfam12538 81 ILVGEAPSTSVYYIGNRDEITISSEEYADIVLQST 115
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
634-815 |
7.28e-27 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 110.16 E-value: 7.28e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 634 YKSLAVPLGLRGKDDIVQLNLheKAHGPHGLVAGTTGSGKSEIIQSYIISLGVNFHPYEVAFLLIDYKGGGMANLFKnMP 713
Cdd:pfam01580 14 YSRLPIALGKDISGNPEVFDL--KKMPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKMGELSAYED-IP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 714 HLLGT--ITNLDGAqsMRALASIKAELQKRQRLFGEHDVNHINQYQKLYK----------------------QGKATEPM 769
Cdd:pfam01580 91 HLLSVpvATDPKRA--LRALEWLVDEMERRYALFRALGVRSIAGYNGEIAedpldgfgdvflviygvhvmctAGRWLEIL 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 404234931 770 PHLFLISDEFAELKSEQPEFMKELVST-----ARIGRSLGIHLILATQKPS 815
Cdd:pfam01580 169 PYLVVIVDERAELRLAAPKDSEMRVEDaivrlAQKGRAAGIHLLLATQRPS 219
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
637-1197 |
2.33e-26 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 115.86 E-value: 2.33e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 637 LAVPLGL-----RGKDDIVQLNLHekAHGPHGLVAGTTGSGKSEIIQSYIISLGVNFHPYEVAFLLIDYKGGGMANLfKN 711
Cdd:TIGR03925 53 LTVPVGIvdrpfEQRQDPLVVDLS--GAAGHVAIVGAPQSGKSTALRTLILALALTHTPEEVQFYCLDFGGGGLASL-AD 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 712 MPHLLGTITNLDGAQSMRALASIKAELQKRQRLFGEHDVNHINQYQKLYKQGKATE-PMPHLFLISDEFAELKSEQPEFM 790
Cdd:TIGR03925 130 LPHVGGVAGRLDPERVRRTVAEVEGLLRRRERLFRTHGIDSMAQYRARRAAGRLPEdPFGDVFLVIDGWGTLRQDFEDLE 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 791 KELVSTARIGRSLGIHLILATQKPSGV---VDDQIWSnskfKLALKVQNASDSnEILKTPdAAEIT--LPGRsylqvGNN 865
Cdd:TIGR03925 210 DKVTDLAARGLAYGVHVVLTASRWSEIrpaLRDLIGT----RIELRLGDPMDS-EIDRRA-AARVPagRPGR-----GLT 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 866 EIYELFQSAWSGADYVPDKEstdyidttIYAINDLGQydiLTEDLSGLDKKDDLTKLPSELDavidhiheyteasgIEAL 945
Cdd:TIGR03925 279 PDGLHMLIALPRLDGIASVD--------DLGTRGLVA---VIRDVWGGPPAPPVRLLPARLP--------------LSAL 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 946 PRPwlppleeqiflpelhqvitdelwsGEKQPLQATIGfLDIPQMqaqEPLTIDLAKDGHLAVFSSPGYGKSTFLQTITM 1025
Cdd:TIGR03925 334 PAG------------------------GGAPRLRVPLG-LGESDL---APVYVDFAESPHLLIFGDSESGKTTLLRTIAR 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1026 DLARQHNPERLHIYLLDLGTnGLLPLKKLPHVADTIMVDEEIKigKLIRRLTLELKERkqkLSKYGVASISMYEKaSKEE 1105
Cdd:TIGR03925 386 GIVRRYSPDQARLVVVDYRR-TLLGAVPEDYLAGYAATSAALT--ELIAALAALLERR---LPGPDVTPQQLRAR-SWWS 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1106 VPAILLVIDAFDSVGEA---PYKDVFEkLIAQiAREgasVGIHLVMSAVRQNAIRVQM---LASIKHQIP--LFMIEPGE 1177
Cdd:TIGR03925 459 GPEIYVVVDDYDLVATGsgnPLAPLVE-LLPH-ARD---IGLHVVVARRSGGAARALMdpvLARLKDLGApgLLLSGDRD 533
|
570 580
....*....|....*....|
gi 404234931 1178 SRSIVGKTDLTiEELPGRGL 1197
Cdd:TIGR03925 534 EGPLLGGVRPR-PLPPGRGV 552
|
|
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
661-819 |
4.67e-24 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 108.86 E-value: 4.67e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 661 PHGLVAGTTGSGKSEIIQSYIISLGVNFHPYEVAFLLIDYKgggMA--NLFKNMPHLLG-TITNLDGAQSmrALASIKAE 737
Cdd:COG1674 282 PHLLIAGATGSGKSVCINAMILSLLYKATPDEVRLILIDPK---MVelSVYNGIPHLLTpVVTDPKKAAN--ALKWAVRE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 738 LQKRQRLFGEHDVNHINQYQKLYKQGKAT-------EPMPHLFLISDEFAELkseqpefM----KElV--STARI---GR 801
Cdd:COG1674 357 MERRYKLFAKAGVRNIAGYNEKVREAKAKgeeeeglEPLPYIVVIIDELADL-------MmvagKE-VeeAIARLaqkAR 428
|
170
....*....|....*...
gi 404234931 802 SLGIHLILATQKPSgvVD 819
Cdd:COG1674 429 AAGIHLILATQRPS--VD 444
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
645-844 |
1.05e-19 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 96.31 E-value: 1.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 645 GKDDIVQLNLHEKAHGPHGLVAGTTGSGKSEIIQSYIISLGVNFHPYEVAFLLIDYKgggMANL--FKNMPHLLG-TITN 721
Cdd:PRK10263 995 GKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPK---MLELsvYEGIPHLLTeVVTD 1071
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 722 L-DGAQSMRALASikaELQKRQRLFGEHDVNHINQYQK---------------LYKQGKAT-------EPMPHLFLISDE 778
Cdd:PRK10263 1072 MkDAANALRWCVN---EMERRYKLMSALGVRNLAGYNEkiaeadrmmrpipdpYWKPGDSMdaqhpvlKKEPYIVVLVDE 1148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 404234931 779 FAELKSEQPEFMKELVST-ARIGRSLGIHLILATQKPS-GVVDDQIWSNSKFKLALKVQNASDSNEIL 844
Cdd:PRK10263 1149 FADLMMTVGKKVEELIARlAQKARAAGIHLVLATQRPSvDVITGLIKANIPTRIAFTVSSKIDSRTIL 1216
|
|
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
959-1209 |
1.04e-18 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 92.34 E-value: 1.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 959 LPELHQVITDELWS--GEKQPLQATIGFLDipqmqAQEPLTIDL---AKDG---HLAVFSSPGYGKSTFLQTITMDLARQ 1030
Cdd:TIGR03924 388 IGDPATLDVDRLWRprPGRDRLRVPIGVGD-----DGEPVELDLkesAEGGmgpHGLCIGATGSGKSELLRTLVLGLAAT 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1031 HNPERLHIYLLDL-GTNGLLPLKKLPHVADTI--MVDEEIKIGKLIRRLTLELKERKQKLSKYG-VASISMYEKA----- 1101
Cdd:TIGR03924 463 HSPEQLNLVLVDFkGGATFLGLEGLPHVSAVItnLADEAPLVDRMQDALAGEMNRRQELLRAAGnFANVAEYEKAraaga 542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1102 SKEEVPAILLVIDAFdsvGE--APYKDvFEKLIAQIAREGASVGIHLVMSAVRQNAIRVQMLAS-IKHQIPLFMIEPGES 1178
Cdd:TIGR03924 543 DLPPLPALFVVVDEF---SEllSQHPD-FADLFVAIGRLGRSLGVHLLLASQRLDEGRLRGLEShLSYRIGLKTFSASES 618
|
250 260 270
....*....|....*....|....*....|....
gi 404234931 1179 RSIVGKTD-LTIEELPGRGLVK--LEEPTVFQTA 1209
Cdd:TIGR03924 619 RAVLGVPDaYHLPSTPGAGYLKvdTAEPVRFRAA 652
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
962-1182 |
2.69e-17 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 82.43 E-value: 2.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 962 LHQVITDELWSGEKQPLQatigfLDIPQMQAQEPLTIDLAK-DGHLAVFSSPGYGKSTFLQTITMDLARQHNPERLHIYL 1040
Cdd:pfam01580 1 LLEVLESKPFDTDYSRLP-----IALGKDISGNPEVFDLKKmPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYC 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1041 LDLGTNGLLPLKKLPHVADTIMVDEEIKIGKLIRRLTLELKERKQKLSKYGVASISMYEkaskEEVPAILLVIDAFDSVG 1120
Cdd:pfam01580 76 IDPKMGELSAYEDIPHLLSVPVATDPKRALRALEWLVDEMERRYALFRALGVRSIAGYN----GEIAEDPLDGFGDVFLV 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 404234931 1121 eapykdvfekliaqiaregaSVGIHLVMSAVRQNAIRVQMLASIKHQIPLFMIEPGESRSIV 1182
Cdd:pfam01580 152 --------------------IYGVHVMCTAGRWLEILPYLVVIVDERAELRLAAPKDSEMRV 193
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
942-1169 |
1.87e-10 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 65.88 E-value: 1.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 942 IEALP-RPW----LPPLEEQIFLpeLHQVITDELWSGEKQPLQATIGfLDIpqmqAQEPLTIDLAKDGHLAVFSSPGYGK 1016
Cdd:PRK10263 951 VEVIPgKPYvgleLPNKKRQTVY--LREVLDNAKFRDNPSPLTVVLG-KDI----AGEPVVADLAKMPHLLVAGTTGSGK 1023
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1017 STFLQTITMDLARQHNPERLHIYLLDLGTNGLLPLKKLPHVADTIMVDEEIKIGKLirRLTLELKERKQKL-SKYGVASI 1095
Cdd:PRK10263 1024 SVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANAL--RWCVNEMERRYKLmSALGVRNL 1101
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 1096 SMY-EKASK--------------------------EEVPAILLVIDAFDSVGEAPYKDVfEKLIAQIAREGASVGIHLVM 1148
Cdd:PRK10263 1102 AGYnEKIAEadrmmrpipdpywkpgdsmdaqhpvlKKEPYIVVLVDEFADLMMTVGKKV-EELIARLAQKARAAGIHLVL 1180
|
250 260
....*....|....*....|.
gi 404234931 1149 SAVRQNAIRVQMLasIKHQIP 1169
Cdd:PRK10263 1181 ATQRPSVDVITGL--IKANIP 1199
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
638-843 |
1.41e-05 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 49.22 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 638 AVPLG-LRGKDDIVQLNLhEKAHGPHGLVAGTTGSGKSeiiqSYIISLGVNFHPYEVAFLLIDYKG--GGMA-------- 706
Cdd:COG0433 25 GILIGkLLSPGVPVYLDL-DKLLNRHILILGATGSGKS----NTLQVLLEELSRAGVPVLVFDPHGeySGLAepgaerad 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 707 -----------------NLFKN---MPHLLGTITNLDGAQSM---RALASIKAE-------------------------- 737
Cdd:COG0433 100 vgvfdpgagrplpinpwDLFATaseLGPLLLSRLDLNDTQRGvlrEALRLADDKglllldlkdlialleegeelgeeygn 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 738 ---------------LQKRQRLFGEH-----------------DVNHINQ--------------YQKLYKQGKATEPMPH 771
Cdd:COG0433 180 vsaasagallrrlesLESADGLFGEPgldledllrtdgrvtviDLSGLPEelqstfvlwllrelFEARPEVGDADDRKLP 259
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 404234931 772 LFLISDEFAELKSEQPEFMKELVST-ARIGRSLGIHLILATQKPSGvVDDQIWSNSKFKLALKVQNASDSNEI 843
Cdd:COG0433 260 LVLVIDEAHLLAPAAPSALLEILERiAREGRKFGVGLILATQRPSD-IDEDVLSQLGTQIILRLFNPRDQKAV 331
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
662-832 |
3.29e-05 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 45.29 E-value: 3.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 662 HGLVAGTTGSGKSEiiqsYIISLGVNFHPYEVAFLLIDYKGggmaNLFKNMPhllgtitnlDGAQSMRALASikaelqkr 741
Cdd:cd01127 1 NTLVLGTTGSGKTT----SIVIPLLDQAARGGSVIITDPKG----ELFLVIP---------DRDDSFAALRA-------- 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 742 qrLFgehdVNHINQ--YQKLYKQGKATEpmPHLFLISDEFAELKSeqPEFMKELVSTariGRSLGIHLILATQ------K 813
Cdd:cd01127 56 --LF----FNQLFRalTELASLSPGRLP--RRVWFILDEFANLGR--IPNLPNLLAT---GRKRGISVVLILQslaqleA 122
|
170 180
....*....|....*....|
gi 404234931 814 PSGVVDDQ-IWSNSKFKLAL 832
Cdd:cd01127 123 VYGKDGAQtILGNCNTKLYL 142
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
770-843 |
4.10e-04 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 44.59 E-value: 4.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 770 PHLFLISDEFAELKseQPEFMKELVSTariGRSLGIHLILATQKPSGVVD-------DQIWSNSKFKLALKVQNASDSNE 842
Cdd:COG3505 247 RPVLLLLDEFANLG--RLPSLETLLAT---GRGYGIRLVLILQSLAQLEAiygeegaETILGNCGTKIFLGVNDPETAEY 321
|
.
gi 404234931 843 I 843
Cdd:COG3505 322 L 322
|
|
| TraG-D_C |
pfam12696 |
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as ... |
771-843 |
7.27e-04 |
|
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.
Pssm-ID: 432726 [Multi-domain] Cd Length: 125 Bit Score: 41.10 E-value: 7.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 771 HLFLISDEFAELKseQPEFMKELVSTariGRSLGIHLILATQKPSGVVD-------DQIWSNSKFKLALKVQNASDSNEI 843
Cdd:pfam12696 1 PVLFVLDEFANLG--KIPDLEKLIST---GRSRGISLMLILQSIAQLEElygkdgaETILGNCNTKVFLGGGDEETAKYL 75
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
649-729 |
5.23e-03 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 41.09 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 404234931 649 IVQLNLHEKAHGPHGLVAGTTGSGKS-----EIIQSYIislgvnfhpYEVAFLLIDyKGGGMANLFKNMPhllGTITNLD 723
Cdd:COG3451 193 PVFFDFHDGLDNGNTLILGPSGSGKSfllklLLLQLLR---------YGARIVIFD-PGGSYEILVRALG---GTYIDLS 259
|
....*.
gi 404234931 724 GAQSMR 729
Cdd:COG3451 260 PGSPTG 265
|
|
| |
