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Conserved domains on  [gi|2480772291|emb|CAI7342037|]
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CHS_3a_G0027430.mRNA.1.CDS.1 [Saccharomyces cerevisiae]

Protein Classification

UBP12 family protein( domain architecture ID 11475638)

UBP12 family protein

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
99-1111 0e+00

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 1068.35  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291   99 LEQQRDVVArliEENKETQKEGDKVCIVPKVWYDKFFDPDVTDPEDIGPINTRMICR-DFENFVLEDYNRCPYLSIAEPV 177
Cdd:COG5560     26 LMMQEELID---EKPAESSKQCEYAVIFAYAWYEGMFDRASCDGGSPGPIVQGPIVDfEPESLKKSLREGIDYSIISGAV 102
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  178 FNFLSEIYGMTSGSYPVVTNLVINQTTGEleTEYNKWFFRLHYLTEkQDGRKRRHGQDdsIMYLSMSALNLVRDLVEKSM 257
Cdd:COG5560    103 WQLLVRWYGLAGLITPRITVLLPSESAPE--VESYPVVFKLHWLFS-INGSLINLGHD--PVPHSASSHGTLRDLSERVM 177
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  258 NLFFEKADhldvnavDFKIWFVSEGSDIATDSNVSTFLNSSYEITPLQFLELPIKKLLIPDMFENRLDKITSNPSDLVIE 337
Cdd:COG5560    178 NAFVDPSD-------DFRLWDVVPEIMGLRLGLDSFFRRYRVLASDGRVLHPLTRLELFEDRSVLLLSKITRNPDWLVDS 250
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  338 ikpiegnHHWPSNYFAYNKLepasGTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLGYHGYVARAF 417
Cdd:COG5560    251 -------IVDDHNRSINKEA----GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAY 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  418 SDLVQKLFqnrmsiMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRIIKKEYTEKPSLSPGDDV 497
Cdd:COG5560    320 ADLIKQLY------DGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDV 393
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  498 ndwnVVKKLADDTWEMHLKRNCSVITDLFVGMYKSTLYCPECQNVSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSPPLL 577
Cdd:COG5560    394 ----VVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP 469
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  578 LEVELSKSSTYMDLKNYVGKMSGLDPNTlfgcEIFSNQIYVNYESTESNAQFLTLQELIKPADDVIFYElpvTNDNEVIV 657
Cdd:COG5560    470 LKIELDASSTIRGLKKLVDAEYGKLGCF----EIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEV 542
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  658 PVLNTRIEKGYKNAMLFGVPFFiTLKedeLNNPGAIRMKLQNrfvhlsggyipfpepvgnrtdfadafpllvekypdvEF 737
Cdd:COG5560    543 PVVHLRIEKGYKSKRLFGDPFL-QLN---VLIKASIYDKLVK------------------------------------EF 582
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  738 EQYkdiLQYTSIKVTDKDKSFFSIKIlsvekeqqfaSNNRTGPNFWtpisqlnLDKATDIDDKLEDvvkdiynysslvdc 817
Cdd:COG5560    583 EEL---LVLVEMKKTDVDLVSEQVRL----------LREESSPSSW-------LKLETEIDTKREE-------------- 628
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  818 aegvlmQVDDEgdtegsEAKNFskpfqsgddeenketvtnnenvnntndrdedmeltddveedastepeltdkPEALdki 897
Cdd:COG5560    629 ------QVEEE------GQMNF---------------------------------------------------NDAV--- 642
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  898 kdsltstpfailsmndIIVCEWSELGSNEAFSddkiynweNPATLPNKELENAklersnakERTITLDDCLQLFSKPEIL 977
Cdd:COG5560    643 ----------------VISCEWEEKRYLSLFS--------YDPLWTIREIGAA--------ERTITLQDCLNEFSKPEQL 690
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  978 GLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQRSFSDKIDATVNFPITDLDLSRYVVYKDDPRgLIYDLYAV 1057
Cdd:COG5560    691 GLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPR-LIYDLYAV 769
                          970       980       990      1000      1010
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2480772291 1058 DNHYGGLGGGHYTAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFYIRRH 1111
Cdd:COG5560    770 DNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
99-1111 0e+00

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 1068.35  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291   99 LEQQRDVVArliEENKETQKEGDKVCIVPKVWYDKFFDPDVTDPEDIGPINTRMICR-DFENFVLEDYNRCPYLSIAEPV 177
Cdd:COG5560     26 LMMQEELID---EKPAESSKQCEYAVIFAYAWYEGMFDRASCDGGSPGPIVQGPIVDfEPESLKKSLREGIDYSIISGAV 102
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  178 FNFLSEIYGMTSGSYPVVTNLVINQTTGEleTEYNKWFFRLHYLTEkQDGRKRRHGQDdsIMYLSMSALNLVRDLVEKSM 257
Cdd:COG5560    103 WQLLVRWYGLAGLITPRITVLLPSESAPE--VESYPVVFKLHWLFS-INGSLINLGHD--PVPHSASSHGTLRDLSERVM 177
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  258 NLFFEKADhldvnavDFKIWFVSEGSDIATDSNVSTFLNSSYEITPLQFLELPIKKLLIPDMFENRLDKITSNPSDLVIE 337
Cdd:COG5560    178 NAFVDPSD-------DFRLWDVVPEIMGLRLGLDSFFRRYRVLASDGRVLHPLTRLELFEDRSVLLLSKITRNPDWLVDS 250
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  338 ikpiegnHHWPSNYFAYNKLepasGTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLGYHGYVARAF 417
Cdd:COG5560    251 -------IVDDHNRSINKEA----GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAY 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  418 SDLVQKLFqnrmsiMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRIIKKEYTEKPSLSPGDDV 497
Cdd:COG5560    320 ADLIKQLY------DGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDV 393
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  498 ndwnVVKKLADDTWEMHLKRNCSVITDLFVGMYKSTLYCPECQNVSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSPPLL 577
Cdd:COG5560    394 ----VVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP 469
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  578 LEVELSKSSTYMDLKNYVGKMSGLDPNTlfgcEIFSNQIYVNYESTESNAQFLTLQELIKPADDVIFYElpvTNDNEVIV 657
Cdd:COG5560    470 LKIELDASSTIRGLKKLVDAEYGKLGCF----EIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEV 542
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  658 PVLNTRIEKGYKNAMLFGVPFFiTLKedeLNNPGAIRMKLQNrfvhlsggyipfpepvgnrtdfadafpllvekypdvEF 737
Cdd:COG5560    543 PVVHLRIEKGYKSKRLFGDPFL-QLN---VLIKASIYDKLVK------------------------------------EF 582
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  738 EQYkdiLQYTSIKVTDKDKSFFSIKIlsvekeqqfaSNNRTGPNFWtpisqlnLDKATDIDDKLEDvvkdiynysslvdc 817
Cdd:COG5560    583 EEL---LVLVEMKKTDVDLVSEQVRL----------LREESSPSSW-------LKLETEIDTKREE-------------- 628
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  818 aegvlmQVDDEgdtegsEAKNFskpfqsgddeenketvtnnenvnntndrdedmeltddveedastepeltdkPEALdki 897
Cdd:COG5560    629 ------QVEEE------GQMNF---------------------------------------------------NDAV--- 642
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  898 kdsltstpfailsmndIIVCEWSELGSNEAFSddkiynweNPATLPNKELENAklersnakERTITLDDCLQLFSKPEIL 977
Cdd:COG5560    643 ----------------VISCEWEEKRYLSLFS--------YDPLWTIREIGAA--------ERTITLQDCLNEFSKPEQL 690
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  978 GLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQRSFSDKIDATVNFPITDLDLSRYVVYKDDPRgLIYDLYAV 1057
Cdd:COG5560    691 GLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPR-LIYDLYAV 769
                          970       980       990      1000      1010
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2480772291 1058 DNHYGGLGGGHYTAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFYIRRH 1111
Cdd:COG5560    770 DNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
364-580 1.71e-52

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 186.88  E-value: 1.71e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  364 TGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPlgyHGYVARAFSDLVQKLFQNrmsimQRNAAFPPSMF 443
Cdd:pfam00443    1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKALQKN-----SKSSSVSPKMF 72
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  444 KSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRiikkeytekpslspgddvndwnvvkkladdtweMHLKRNCSVIT 523
Cdd:pfam00443   73 KKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------------------------------NHSTENESLIT 119
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2480772291  524 DLFVGMYKSTLYCPECQNVSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSPPLLLEV 580
Cdd:pfam00443  120 DLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEE 176
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
962-1108 3.83e-52

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 182.87  E-value: 3.83e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  962 ITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQRSFSDKIDATVNFPITDLDLSRYV 1041
Cdd:cd02674     84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2480772291 1042 VYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFYI 1108
Cdd:cd02674    164 DTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
DUSP smart00695
Domain in ubiquitin-specific proteases;
116-202 1.35e-18

Domain in ubiquitin-specific proteases;


Pssm-ID: 197831  Cd Length: 88  Bit Score: 81.64  E-value: 1.35e-18
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291   116 TQKEGDKVCIVPKVWYDKFFDPDV-TDPEDIGPI-NTRMICRDF-ENFVLEDYNRCPYLSIAEPVFNFLSEIYGMTSGsy 192
Cdd:smart00695    1 PLEEGLTWYLISTRWYRQWADFVEgKDGKDPGPIdNSGILCSHGgPRLKEHLVEGEDYVLIPEELWNKLVRWYGGGPG-- 78
                            90
                    ....*....|
gi 2480772291   193 PVVTNLVINQ 202
Cdd:smart00695   79 PIPRKVVCQG 88
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
99-1111 0e+00

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 1068.35  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291   99 LEQQRDVVArliEENKETQKEGDKVCIVPKVWYDKFFDPDVTDPEDIGPINTRMICR-DFENFVLEDYNRCPYLSIAEPV 177
Cdd:COG5560     26 LMMQEELID---EKPAESSKQCEYAVIFAYAWYEGMFDRASCDGGSPGPIVQGPIVDfEPESLKKSLREGIDYSIISGAV 102
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  178 FNFLSEIYGMTSGSYPVVTNLVINQTTGEleTEYNKWFFRLHYLTEkQDGRKRRHGQDdsIMYLSMSALNLVRDLVEKSM 257
Cdd:COG5560    103 WQLLVRWYGLAGLITPRITVLLPSESAPE--VESYPVVFKLHWLFS-INGSLINLGHD--PVPHSASSHGTLRDLSERVM 177
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  258 NLFFEKADhldvnavDFKIWFVSEGSDIATDSNVSTFLNSSYEITPLQFLELPIKKLLIPDMFENRLDKITSNPSDLVIE 337
Cdd:COG5560    178 NAFVDPSD-------DFRLWDVVPEIMGLRLGLDSFFRRYRVLASDGRVLHPLTRLELFEDRSVLLLSKITRNPDWLVDS 250
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  338 ikpiegnHHWPSNYFAYNKLepasGTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLGYHGYVARAF 417
Cdd:COG5560    251 -------IVDDHNRSINKEA----GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAY 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  418 SDLVQKLFqnrmsiMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRIIKKEYTEKPSLSPGDDV 497
Cdd:COG5560    320 ADLIKQLY------DGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDV 393
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  498 ndwnVVKKLADDTWEMHLKRNCSVITDLFVGMYKSTLYCPECQNVSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSPPLL 577
Cdd:COG5560    394 ----VVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP 469
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  578 LEVELSKSSTYMDLKNYVGKMSGLDPNTlfgcEIFSNQIYVNYESTESNAQFLTLQELIKPADDVIFYElpvTNDNEVIV 657
Cdd:COG5560    470 LKIELDASSTIRGLKKLVDAEYGKLGCF----EIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEV 542
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  658 PVLNTRIEKGYKNAMLFGVPFFiTLKedeLNNPGAIRMKLQNrfvhlsggyipfpepvgnrtdfadafpllvekypdvEF 737
Cdd:COG5560    543 PVVHLRIEKGYKSKRLFGDPFL-QLN---VLIKASIYDKLVK------------------------------------EF 582
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  738 EQYkdiLQYTSIKVTDKDKSFFSIKIlsvekeqqfaSNNRTGPNFWtpisqlnLDKATDIDDKLEDvvkdiynysslvdc 817
Cdd:COG5560    583 EEL---LVLVEMKKTDVDLVSEQVRL----------LREESSPSSW-------LKLETEIDTKREE-------------- 628
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  818 aegvlmQVDDEgdtegsEAKNFskpfqsgddeenketvtnnenvnntndrdedmeltddveedastepeltdkPEALdki 897
Cdd:COG5560    629 ------QVEEE------GQMNF---------------------------------------------------NDAV--- 642
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  898 kdsltstpfailsmndIIVCEWSELGSNEAFSddkiynweNPATLPNKELENAklersnakERTITLDDCLQLFSKPEIL 977
Cdd:COG5560    643 ----------------VISCEWEEKRYLSLFS--------YDPLWTIREIGAA--------ERTITLQDCLNEFSKPEQL 690
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  978 GLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQRSFSDKIDATVNFPITDLDLSRYVVYKDDPRgLIYDLYAV 1057
Cdd:COG5560    691 GLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPR-LIYDLYAV 769
                          970       980       990      1000      1010
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2480772291 1058 DNHYGGLGGGHYTAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFYIRRH 1111
Cdd:COG5560    770 DNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
364-580 1.71e-52

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 186.88  E-value: 1.71e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  364 TGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPlgyHGYVARAFSDLVQKLFQNrmsimQRNAAFPPSMF 443
Cdd:pfam00443    1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKALQKN-----SKSSSVSPKMF 72
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  444 KSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRiikkeytekpslspgddvndwnvvkkladdtweMHLKRNCSVIT 523
Cdd:pfam00443   73 KKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------------------------------NHSTENESLIT 119
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2480772291  524 DLFVGMYKSTLYCPECQNVSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSPPLLLEV 580
Cdd:pfam00443  120 DLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEE 176
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
962-1108 3.83e-52

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 182.87  E-value: 3.83e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  962 ITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQRSFSDKIDATVNFPITDLDLSRYV 1041
Cdd:cd02674     84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2480772291 1042 VYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFYI 1108
Cdd:cd02674    164 DTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
952-1107 3.04e-43

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 160.30  E-value: 3.04e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  952 LERSNAKERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQRSFSDKIDATVNFP 1031
Cdd:pfam00443  152 IPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEFP 231
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1032 ItDLDLSRYV---VYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNFADNKWYYFDDSRVTETAPENSI-AGSAYLLFY 1107
Cdd:pfam00443  232 L-ELDLSRYLaeeLKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEETAVlSSSAYILFY 310
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
961-1108 6.84e-32

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 125.67  E-value: 6.84e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  961 TITLDDCLQLFSKPEILGLTDSWYCPTCKeHRQATKQIQLWNTPDILLIHLKRFESQRSFS-DKIDATVNFPITdLDLSR 1039
Cdd:cd02257     98 QVSLEDCLEKFFKEEILEGDNCYKCEKKK-KQEATKRLKIKKLPPVLIIHLKRFSFNEDGTkEKLNTKVSFPLE-LDLSP 175
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1040 YVVYK-----DDPRGLIYDLYAVDNHYGGLGGG-HYTAYVKNFADNKWYYFDDSRVTETAPE-----NSIAGSAYLLFYI 1108
Cdd:cd02257    176 YLSEGekdsdSDNGSYKYELVAVVVHSGTSADSgHYVAYVKDPSDGKWYKFNDDKVTEVSEEevlefGSLSSSAYILFYE 255
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
941-1108 9.77e-30

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 121.33  E-value: 9.77e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  941 TLPNKELENAKLERSNAKErTITLDDCLQLFSKPEILGltDSWY-CPTCKEHRQATKQIQLWNTPDILLIHLKRFE-SQR 1018
Cdd:cd02660    156 DIPNKSTPSWALGESGVSG-TPTLSDCLDRFTRPEKLG--DFAYkCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEhSLN 232
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1019 SFSDKIDATVNFPiTDLDLSRYV-----VYKD---DPRGLIYDLYAVDNHYGGLGGGHYTAYVKNfADNKWYYFDDSRVT 1090
Cdd:cd02660    233 KTSRKIDTYVQFP-LELNMTPYTsssigDTQDsnsLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQ-GDGQWFKFDDAMIT 310
                          170
                   ....*....|....*...
gi 2480772291 1091 ETAPENSIAGSAYLLFYI 1108
Cdd:cd02660    311 RVSEEEVLKSQAYLLFYH 328
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
963-1108 1.89e-29

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 120.07  E-value: 1.89e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  963 TLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQRsfSDKIDATVNFPITdLDLSRYVV 1042
Cdd:cd02661    163 SLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFR--GGKINKQISFPET-LDLSPYMS 239
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2480772291 1043 YKDDPrGLIYDLYAVDNHYGGLGGG-HYTAYVKNfADNKWYYFDDSRVTETAPENSIAGSAYLLFYI 1108
Cdd:cd02661    240 QPNDG-PLKYKLYAVLVHSGFSPHSgHYYCYVKS-SNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
365-561 9.43e-26

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 109.77  E-value: 9.43e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  365 GLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPlgyHGYVARAFSDLVQKLFQNrmsimQRNAAFPPSMFK 444
Cdd:cd02660      2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSP---NSCLSCAMDEIFQEFYYS-----GDRSPYGPINLL 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  445 STIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRIIKKEYTEKPslspgddvndwnvvkkladdtwemhlkrnCSVITD 524
Cdd:cd02660     74 YLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESH-----------------------------CNCIIH 124
                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 2480772291  525 -LFVGMYKSTLYCPECQNVSITFDPYNDVTLPLPVDTV 561
Cdd:cd02660    125 qTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKST 162
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
364-563 1.14e-23

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 103.12  E-value: 1.14e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  364 TGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLgyhgyVARAFSDLVQKLFQNRMSIMqrnaafPPSMF 443
Cdd:cd02661      2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFC-----MMCALEAHVERALASSGPGS------APRIF 70
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  444 KSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRIIKKEYTEKPSLspgddvndwnvvkkladdtwemhlkRNCSVIT 523
Cdd:cd02661     71 SSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSS-------------------------QETTLVQ 125
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 2480772291  524 DLFVGMYKSTLYCPECQNVSITFDPYNDVTLPLP-VDTVWD 563
Cdd:cd02661    126 QIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKgADSLED 166
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
365-557 3.62e-21

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 93.89  E-value: 3.62e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  365 GLVNLGNTCYMNSALQCLVHipqlrdyflydgyedeineenplgyhgyvarafsdlvqklfqnrmsimqrnaafppsmfk 444
Cdd:cd02674      1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  445 stighfnsmfsgyMQQDSQEFLAFLLDSLHedlnriikkeytekpslspgddvndwnvvkkladdtwemhlkrncSVITD 524
Cdd:cd02674     21 -------------DQQDAQEFLLFLLDGLH---------------------------------------------SIIVD 42
                          170       180       190
                   ....*....|....*....|....*....|...
gi 2480772291  525 LFVGMYKSTLYCPECQNVSITFDPYNDVTLPLP 557
Cdd:cd02674     43 LFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIP 75
DUSP smart00695
Domain in ubiquitin-specific proteases;
116-202 1.35e-18

Domain in ubiquitin-specific proteases;


Pssm-ID: 197831  Cd Length: 88  Bit Score: 81.64  E-value: 1.35e-18
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291   116 TQKEGDKVCIVPKVWYDKFFDPDV-TDPEDIGPI-NTRMICRDF-ENFVLEDYNRCPYLSIAEPVFNFLSEIYGMTSGsy 192
Cdd:smart00695    1 PLEEGLTWYLISTRWYRQWADFVEgKDGKDPGPIdNSGILCSHGgPRLKEHLVEGEDYVLIPEELWNKLVRWYGGGPG-- 78
                            90
                    ....*....|
gi 2480772291   193 PVVTNLVINQ 202
Cdd:smart00695   79 PIPRKVVCQG 88
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
963-1121 7.53e-18

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 86.32  E-value: 7.53e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  963 TLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKR--FESQRSFSDKIDATVNFPiTDLDLSRY 1040
Cdd:cd02668    157 TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRfvFDRKTGAKKKLNASISFP-EILDMGEY 235
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1041 VVYKdDPRGLIYDLYAVDNHY-GGLGGGHYTAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFYIRRHKDGNGLGS 1119
Cdd:cd02668    236 LAES-DEGSYVYELSGVLIHQgVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHS 314

                   ..
gi 2480772291 1120 SK 1121
Cdd:cd02668    315 SR 316
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
914-1107 1.23e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 84.75  E-value: 1.23e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  914 IIVCEWSELGSNEAFSDDKIynwenpaTLPNKELENaklersnaKERTItlDDCLQLFSKPEILGLTDSWYCPTCKEhrq 993
Cdd:cd02667     80 TIMCESCGTVSLVYEPFLDL-------SLPRSDEIK--------SECSI--ESCLKQFTEVEILEGNNKFACENCTK--- 139
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  994 ATKQIQLWNTPDILLIHLKRFESQRSFSD-KIDATVNFPiTDLDLSRYVVYKDD-PRG---LIYDLYAVDNHYGGLGGGH 1068
Cdd:cd02667    140 AKKQYLISKLPPVLVIHLKRFQQPRSANLrKVSRHVSFP-EILDLAPFCDPKCNsSEDkssVLYRLYGVVEHSGTMRSGH 218
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1069 YTAYVK---------------NFADN------KWYYFDDSRVTETAPENSIAGSAYLLFY 1107
Cdd:cd02667    219 YVAYVKvrppqqrlsdltkskPAADEagpgsgQWYYISDSDVREVSLEEVLKSEAYLLFY 278
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
365-487 3.38e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 83.91  E-value: 3.38e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  365 GLVNLGNTCYMNSALQCLVHIP--QLRDYFLYDGYEDEINE-ENPLGYHgyvaraFSDLVQKLFQNR----MSIMQRNAA 437
Cdd:cd02658      1 GLRNLGNSCYLNSVLQVLFSIPsfQWRYDDLENKFPSDVVDpANDLNCQ------LIKLADGLLSGRyskpASLKSENDP 74
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2480772291  438 FP----PSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRIIKKEYTE 487
Cdd:cd02658     75 YQvgikPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKNLGLNPND 128
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
365-566 4.95e-17

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 82.15  E-value: 4.95e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  365 GLVNLGNTCYMNSALQCLVHipqlrdyflydgyedeineenplgyhgyvarafsdlvqklfqnrmsimqrnaafppsmfk 444
Cdd:cd02257      1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  445 stighfnsmfsgyMQQDSQEFLAFLLDSLHEDLNRIIKKEYTEKPSLspgddvndwnvvkkladdtwemhlkrncSVITD 524
Cdd:cd02257     21 -------------EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLK----------------------------SLIHD 59
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 2480772291  525 LFVGMYKSTLYCPECQNVSITFDPYNDVTLPLPVDTVWDKTI 566
Cdd:cd02257     60 LFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQVSL 101
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
964-1109 8.54e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 83.08  E-value: 8.54e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  964 LDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFE--SQRSFSDKIDATVNFPITdLDLSRYV 1041
Cdd:cd02659    153 LEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEfdFETMMRIKINDRFEFPLE-LDMEPYT 231
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1042 V----------YKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNFADNKWYYFDDSRVTETAPENSIA------------ 1099
Cdd:cd02659    232 EkglakkegdsEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEecfggeetqkty 311
                          170       180
                   ....*....|....*....|
gi 2480772291 1100 ----------GSAYLLFYIR 1109
Cdd:cd02659    312 dsgprafkrtTNAYMLFYER 331
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
365-559 1.03e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 75.89  E-value: 1.03e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  365 GLVNLGNTCYMNSALQCLVHIPQLRDYFLYDgyedeineenplgyhgyvarafsdlvqklfqnrmsimqrnaafpPSMFK 444
Cdd:cd02667      1 GLSNLGNTCFFNAVMQNLSQTPALRELLSET--------------------------------------------PKELF 36
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  445 STIGHFNSMFSGYMQQDSQEFLAFLLDSLHedlnriikkeytekpslspgddvndwnvvkkladdtwemhlkrncSVITD 524
Cdd:cd02667     37 SQVCRKAPQFKGYQQQDSHELLRYLLDGLR---------------------------------------------TFIDS 71
                          170       180       190
                   ....*....|....*....|....*....|....*
gi 2480772291  525 LFVGMYKSTLYCPECQNVSITFDPYNDVTLPLPVD 559
Cdd:cd02667     72 IFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDE 106
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
959-1107 1.32e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 76.19  E-value: 1.32e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  959 ERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQRSFS--DKIDATVNFPITdLD 1036
Cdd:cd02663    144 EQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNryIKLFYRVVFPLE-LR 222
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1037 LSRYVVYKDDPRgLIYDLYAVDNHY-GGLGGGHYTAYVKnfADNKWYYFDDSRVtETAPENSIA---------GSAYLLF 1106
Cdd:cd02663    223 LFNTTDDAENPD-RLYELVAVVVHIgGGPNHGHYVSIVK--SHGGWLLFDDETV-EKIDENAVEeffgdspnqATAYVLF 298

                   .
gi 2480772291 1107 Y 1107
Cdd:cd02663    299 Y 299
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
365-477 1.99e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 75.45  E-value: 1.99e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  365 GLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENplgyHGYVARAFSDLVQKLFQNRMSImqrnaafPPSMFK 444
Cdd:cd02657      1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQS----SDNLTNALRDLFDTMDKKQEPV-------PPIEFL 69
                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 2480772291  445 STIGHFNSMFS------GYMQQDSQEFLAFLLDSLHEDL 477
Cdd:cd02657     70 QLLRMAFPQFAekqnqgGYAQQDAEECWSQLLSVLSQKL 108
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
941-1107 5.91e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 74.54  E-value: 5.91e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  941 TLPNKELENAKLERS-----NAKERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFE 1015
Cdd:cd02671    154 SVPVQESELSKSEESseispDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFA 233
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1016 SQRSFSDKID--ATVNFPI-TDLDLSRYvVYKDDPRGLIYDLYAVDNHY-GGLGGGHYTAYVknfadnKWYYFDDSRVTE 1091
Cdd:cd02671    234 ANGSEFDCYGglSKVNTPLlTPLKLSLE-EWSTKPKNDVYRLFAVVMHSgATISSGHYTAYV------RWLLFDDSEVKV 306
                          170       180
                   ....*....|....*....|....*
gi 2480772291 1092 T---------APENSIAGSAYLLFY 1107
Cdd:cd02671    307 TeekdflealSPNTSSTSTPYLLFY 331
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
365-559 1.25e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 66.95  E-value: 1.25e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  365 GLVNLGNTCYMNSALQCLVHipqlrdYFLYDgyedeineenplgyhgyvarAFSDLVQKLFQNRmsimQRNAAFPPSMFK 444
Cdd:cd02663      1 GLENFGNTCYCNSVLQALYF------ENLLT--------------------CLKDLFESISEQK----KRTGVISPKKFI 50
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  445 STIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRIIKKEYTEKPSLspgddvndwNVVKKLADDTWemhlkrncsvITD 524
Cdd:cd02663     51 TRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLN---------NNNNAEPQPTW----------VHE 111
                          170       180       190
                   ....*....|....*....|....*....|....*
gi 2480772291  525 LFVGMYKSTLYCPECQNVSITFDPYNDvtlpLPVD 559
Cdd:cd02663    112 IFQGILTNETRCLTCETVSSRDETFLD----LSID 142
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
1004-1109 3.11e-11

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 65.59  E-value: 3.11e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1004 PDILLIHLKRFESQRSFSdKIDATVNFPItdldlsRYVVYKDDPRGL----IYDLYAVDNHYGGLGGGHYTAYVKNfaDN 1079
Cdd:COG5533    180 PKILTIQLKRFANLGGNQ-KIDTEVDEKF------ELPVKHDQILNIvketYYDLVGFVLHQGSLEGGHYIAYVKK--GG 250
                           90       100       110
                   ....*....|....*....|....*....|...
gi 2480772291 1080 KWYYFDDSRVTETAPENSI---AGSAYLLFYIR 1109
Cdd:COG5533    251 KWEKANDSDVTPVSEEEAInekAKNAYLYFYER 283
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
877-1107 4.28e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 61.61  E-value: 4.28e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  877 VEEDAStepeltdkpEALDKIKDSLTS---TPFAILsMNDIIVCewSELGSNEAFSDDKIYNWENPatLPNKELENakle 953
Cdd:cd02662     33 EQQDAH---------ELFQVLLETLEQllkFPFDGL-LASRIVC--LQCGESSKVRYESFTMLSLP--VPNQSSGS---- 94
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  954 rsnakerTITLDDCLQLFSKPEILgltDSWYCPTCKehrqaTKQIQLwntPDILLIHLKRFE-SQRSFSDKIDATVNFPi 1032
Cdd:cd02662     95 -------GTTLEHCLDDFLSTEII---DDYKCDRCQ-----TVIVRL---PQILCIHLSRSVfDGRGTSTKNSCKVSFP- 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1033 tdLDLSRYvvykddprglIYDLYAVDNHYGGLGGGHYTAY--------------------VKNFADNKWYYFDDSRVTET 1092
Cdd:cd02662    156 --ERLPKV----------LYRLRAVVVHYGSHSSGHYVCYrrkplfskdkepgsfvrmreGPSSTSHPWWRISDTTVKEV 223
                          250
                   ....*....|....*.
gi 2480772291 1093 APENSI-AGSAYLLFY 1107
Cdd:cd02662    224 SESEVLeQKSAYMLFY 239
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
362-483 4.95e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 63.49  E-value: 4.95e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  362 GTTGLVNLGNTCYMNSALQCLVHIPQLRDYFL-YDGYEDEINEENPLgyhgyVARaFSDLVQKLFQnrmsimqrnaafpP 440
Cdd:cd02669    118 GFVGLNNIKNNDYANVIIQALSHVKPIRNFFLlYENYENIKDRKSEL-----VKR-LSELIRKIWN-------------P 178
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2480772291  441 SMFKSTIG----------HFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRIIKK 483
Cdd:cd02669    179 RNFKGHVSphellqavskVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKP 231
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
365-474 6.66e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 62.12  E-value: 6.66e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  365 GLVNLGNTCYMNSALQCLVHIPQLRDYFLyDGYEDEINEENPLGyhgyvarafsdLVQKLFQNRMSIMQRNAAFPPSMFk 444
Cdd:cd02664      1 GLINLGNTCYMNSVLQALFMAKDFRRQVL-SLNLPRLGDSQSVM-----------KKLQLLQAHLMHTQRRAEAPPDYF- 67
                           90       100       110
                   ....*....|....*....|....*....|....
gi 2480772291  445 stighFNSM----FSGYMQQDSQEFLAFLLDSLH 474
Cdd:cd02664     68 -----LEASrppwFTPGSQQDCSEYLRYLLDRLH 96
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1004-1107 7.65e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 61.58  E-value: 7.65e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1004 PDILLIHLKRFESQRSFSD--KIDATVNFPITdLDLSRYVvykdDPRGLiYDLYAVDNHYGGLGGG-HYTAYVKNFADNK 1080
Cdd:cd02657    197 PKYLTVQFVRFFWKRDIQKkaKILRKVKFPFE-LDLYELC----TPSGY-YELVAVITHQGRSADSgHYVAWVRRKNDGK 270
                           90       100       110
                   ....*....|....*....|....*....|....
gi 2480772291 1081 WYYFDDSRVTETAPEN--SIAG-----SAYLLFY 1107
Cdd:cd02657    271 WIKFDDDKVSEVTEEDilKLSGggdwhIAYILLY 304
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
963-1139 2.69e-09

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 61.81  E-value: 2.69e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  963 TLDDCLQLFSKPEILGLTDSWYCPTckeH--RQATKQIQLWNTPDILLIHLKRFES--QRSFSDKIDATVNFPITdLDLS 1038
Cdd:COG5077    339 NLQESFRRYIQVETLDGDNRYNAEK---HglQDAKKGVIFESLPPVLHLQLKRFEYdfERDMMVKINDRYEFPLE-IDLL 414
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1039 RYV---VYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNFADNKWYYFDDSRVTET----APENSIAG----------- 1100
Cdd:COG5077    415 PFLdrdADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRAtekeVLEENFGGdhpykdkirdh 494
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 2480772291 1101 -------SAYLLFYIRRHKDGNGLGSSKLQEIIQKSRHGYDERIKK 1139
Cdd:COG5077    495 sgikrfmSAYMLVYLRKSMLDDLLNPVAAVDIPPHVEEVLSEEIDK 540
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1004-1107 2.98e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 60.80  E-value: 2.98e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1004 PDILLIHLKRFESQRSFSDKIDATVNFPITDLDLSRYV--VYKDDPRGLIYDLYAVDNHYGGLGGGH-YTAYVKNFADNK 1080
Cdd:cd02669    333 PKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVhfDKPSLNLSTKYNLVANIVHEGTPQEDGtWRVQLRHKSTNK 412
                           90       100
                   ....*....|....*....|....*..
gi 2480772291 1081 WYYFDDSRVTETAPENSIAGSAYLLFY 1107
Cdd:cd02669    413 WFEIQDLNVKEVLPQLIFLSESYIQIW 439
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
365-554 3.46e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 59.96  E-value: 3.46e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  365 GLVNLGNTCYMNSALQCLVHIPQLRDYfLYDGYEDEINEENPlgyhgyvarAFSDLVQKLF-QNRMSIMQRNAAFPPSMF 443
Cdd:cd02659      4 GLKNQGATCYMNSLLQQLYMTPEFRNA-VYSIPPTEDDDDNK---------SVPLALQRLFlFLQLSESPVKTTELTDKT 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  444 KStighFNSMFS-GYMQQDSQEFLAFLLDSLHEDLnriiKKeyTEKPSLspgddvndwnvvkkladdtwemhlkrncsvI 522
Cdd:cd02659     74 RS----FGWDSLnTFEQHDVQEFFRVLFDKLEEKL----KG--TGQEGL------------------------------I 113
                          170       180       190
                   ....*....|....*....|....*....|..
gi 2480772291  523 TDLFVGMYKSTLYCPECQNVSITFDPYNDVTL 554
Cdd:cd02659    114 KNLFGGKLVNYIICKECPHESEREEYFLDLQV 145
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
963-1107 1.21e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 58.27  E-value: 1.21e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  963 TLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRF------ESQRSFSDK--IDATVNFPITD 1034
Cdd:cd02664    135 SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFsydqktHVREKIMDNvsINEVLSLPVRV 214
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1035 LDLSRYVVY--KDDPRG---------LIYDLYAVDNHY-GGLGGGHYTAYVKNFADNK--------------------WY 1082
Cdd:cd02664    215 ESKSSESPLekKEEESGddgelvtrqVHYRLYAVVVHSgYSSESGHYFTYARDQTDADstgqecpepkdaeendesknWY 294
                          170       180       190
                   ....*....|....*....|....*....|..
gi 2480772291 1083 YFDDSRVTETAPEN----SIAGS---AYLLFY 1107
Cdd:cd02664    295 LFNDSRVTFSSFESvqnvTSRFPkdtPYILFY 326
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
936-1107 1.23e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 58.10  E-value: 1.23e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  936 WENPATLPNKELENAKLERSNAKERTITLDDCLQLFSKPEILGLtdswYCPTCKEHRQATKQIQLWNTPDILLIHLKRFE 1015
Cdd:cd02658    152 LSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIED----FCSTCKEKTTATKTTGFKTFPDYLVINMKRFQ 227
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291 1016 -SQRSFSDKIDATVNFPitdldlsryvvykDDPRGLIYDLYAVDNHY-GGLGGGHYTAYVKNFADN--KWYYFDDSRVTE 1091
Cdd:cd02658    228 lLENWVPKKLDVPIDVP-------------EELGPGKYELIAFISHKgTSVHSGHYVAHIKKEIDGegKWVLFNDEKVVA 294
                          170
                   ....*....|....*.
gi 2480772291 1092 TAPENSIAGSAYLLFY 1107
Cdd:cd02658    295 SQDPPEMKKLGYIYFY 310
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
348-475 2.55e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 57.21  E-value: 2.55e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  348 PSNYFAYNKLEPASGTTGLVNLGNTCYMNSALQCLVHIPQLRD--YFLYDGYEDEIN-----EENPLGYHgyvarafsDL 420
Cdd:cd02671      9 PSSATSCEKRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHglKHLVSLISSVEQlqssfLLNPEKYN--------DE 80
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2480772291  421 VqklfqnrmsimqrnAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHE 475
Cdd:cd02671     81 L--------------ANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQE 121
DUSP pfam06337
DUSP domain; The DUSP (domain present in ubiquitin-specific protease) domain is found at the ...
120-200 3.15e-08

DUSP domain; The DUSP (domain present in ubiquitin-specific protease) domain is found at the N-terminus of Ubiquitin-specific proteases. The structure of this domain has been solved. Its tripod-like structure consists of a 3-fold alpha-helical bundle supporting a triple-stranded anti-parallel beta-sheet.


Pssm-ID: 399383  Cd Length: 80  Bit Score: 51.98  E-value: 3.15e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  120 GDKVCIVPKVWYDKFFDPDVTDPEDIGPINTRMICRDFENFVL--EDYNRCPYLSIAEPVFNFLSEIYGmtsGSYPVVTN 197
Cdd:pfam06337    1 GDKVYLISSKWLNKWKSYVKEPNNEPGPIDNSDLLDDESNGQLkpNLQEGVDYVIVPEEVWEFLVEWYG---GGPEIKRN 77

                   ...
gi 2480772291  198 LVI 200
Cdd:pfam06337   78 VVN 80
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
365-509 4.86e-08

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 55.96  E-value: 4.86e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  365 GLVNLGNTCYMNSALQCLVHipqlrdyflydgYEDEINEenplgYHGYVARAFSDLVQKlFQNRMSIMQRNAA--FPPSM 442
Cdd:COG5533      1 GLPNLGNTCFMNSVLQILAL------------YLPKLDE-----LLDDLSKELKVLKNV-IRKPEPDLNQEEAlkLFTAL 62
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2480772291  443 FKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRIIKKEYT------EKPSLSPGDDVNDWNVVKKLADD 509
Cdd:COG5533     63 WSSKEHKVGWIPPMGSQEDAHELLGKLLDELKLDLVNSFTIRIFkttkdkKKTSTGDWFDIIIELPDQTWVNN 135
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
365-439 1.29e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 51.21  E-value: 1.29e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2480772291  365 GLVNLGNTCYMNSALQCLVHIPQLRDYFlydgyeDEINEENplgyhgyvarafsDLvQKLFQNRMSIMQRNAAFP 439
Cdd:cd02662      1 GLVNLGNTCFMNSVLQALASLPSLIEYL------EEFLEQQ-------------DA-HELFQVLLETLEQLLKFP 55
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
365-545 2.60e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 50.88  E-value: 2.60e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  365 GLVNLGNTCYMNSALQCLVHIPQLRDYFLY-----DGYEDEINEENPLGYHGYVarafsDLVQKLFQNrMSIMQRNaAFP 439
Cdd:cd02668      1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYEcnsteDAELKNMPPDKPHEPQTII-----DQLQLIFAQ-LQFGNRS-VVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  440 PSMFKSTIGHFNSmfsgyMQQDSQEFLAFLLdSLHEDlnriikkeytekpSLSPGDDVNDWNVVKkladdtwemhlkrnc 519
Cdd:cd02668     74 PSGFVKALGLDTG-----QQQDAQEFSKLFL-SLLEA-------------KLSKSKNPDLKNIVQ--------------- 119
                          170       180
                   ....*....|....*....|....*.
gi 2480772291  520 svitDLFVGMYKSTLYCPECQNVSIT 545
Cdd:cd02668    120 ----DLFRGEYSYVTQCSKCGRESSL 141
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
350-473 2.33e-04

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 45.63  E-value: 2.33e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  350 NYFAYNKLEpASGTTGLVNLGNTCYMNSALQCLVHIpqlrDYFLYDGYEDEINEENPLGYHGYvarafsdLVQKLFQNrM 429
Cdd:COG5077    181 SFLNYNSKK-ETGYVGLRNQGATCYMNSLLQSLFFI----AKFRKDVYGIPTDHPRGRDSVAL-------ALQRLFYN-L 247
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 2480772291  430 SIMQRnaafPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSL 473
Cdd:COG5077    248 QTGEE----PVDTTELTRSFGWDSDDSFMQHDIQEFNRVLQDNL 287
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
985-1107 2.34e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 44.44  E-value: 2.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  985 CPTCKeHRQATKQIQLWNTPDILLIHLKRFESQRSFSDkidatvnfpitDLDLSRYVVYKDDPRGLIYDLYAVDNHY-GG 1063
Cdd:cd02673    129 CSSCK-CESAISSERIMTFPECLSINLKRYKLRIATSD-----------YLKKNEEIMKKYCGTDAKYSLVAVICHLgES 196
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 2480772291 1064 LGGGHYTAYVKN-FADNKWYYFDDSRVTETAPEN---SIAGSAYLLFY 1107
Cdd:cd02673    197 PYDGHYIAYTKElYNGSSWLYCSDDEIRPVSKNDvstNARSSGYLIFY 244
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
985-1089 4.42e-04

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 43.80  E-value: 4.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2480772291  985 CPTCKEHRQATKQIQLWNTPDILLIHLKRFESQrsfSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNH-YGG 1063
Cdd:pfam13423  196 CEKCKRYQPLESRRTVRNLPPVLSLNAALTNEE---WRQLWKTPGWLPPEIGLTLSDDLQGDNEIVKYELRGVVVHiGDS 272
                           90       100       110
                   ....*....|....*....|....*....|...
gi 2480772291 1064 LGGGHYTAYVK-------NFADNKWYYFDDSRV 1089
Cdd:pfam13423  273 GTSGHLVSFVKvadseleDPTESQWYLFNDFLV 305
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
364-409 4.82e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 44.02  E-value: 4.82e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 2480772291  364 TGLVNLGNTCYMNSALQCLVHIPQLRDYFL-YDGYEDEINEENPLGY 409
Cdd:cd02666      2 AGLDNIGNTCYLNSLLQYFFTIKPLRDLVLnFDESKAELASDYPTER 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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