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Conserved domains on  [gi|17428895|emb|CAD15579|]
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probable aspartyl/asparaginyl beta-hydroxylase transmembrane protein [Ralstonia pseudosolanacearum GMI1000]

Protein Classification

aspartyl/asparaginyl beta-hydroxylase domain-containing protein( domain architecture ID 14341623)

aspartyl/asparaginyl beta-hydroxylase domain-containing protein similar to Pseudomonas aeruginosa lipopolysaccharide biosynthetic protein LpxO, a Fe2+/alpha-ketoglutarate-dependent dioxygenase homolog

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Asp_Arg_Hydrox super family cl42444
Aspartyl/Asparaginyl beta-hydroxylase; Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases ...
3-299 0e+00

Aspartyl/Asparaginyl beta-hydroxylase; Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyze oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalysing oxidation of a free alpha-amino acid. The structure of proline 3-hydroxylase contains the conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. This family represent the arginine, asparagine and proline hydroxylases. The aspartyl/asparaginyl beta-hydroxylase (EC:1.14.11.16) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins.


The actual alignment was detected with superfamily member NF033391:

Pssm-ID: 478204  Cd Length: 297  Bit Score: 622.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895    3 KWILVALYLGSILYVHFRGKVRLKFWRQMLDHSAVVAPVNCFMYAFSGVPQTPYVPVDHFPDLQKLQAAWPQIRDEALAL 82
Cdd:NF033391   1 KWIILAIFIASVLYVHFRGRVRHKFSRQLSDHSTFMAPINCFMYLFSRVPNTPYLPTEEFPELQPLQDNWEVIRDEALAL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895   83 TNLRKIKAAEKNDDAGFNSFFKNGWKRFYLKWYEANHPSAEQLCPKTVALLRELPSVKAAMFAELPPGGKLNPHRDPFAG 162
Cdd:NF033391  81 QEAGHIKAAEKYNDAGFNSFFKTGWKRFYLKWYDDAHPSAEALCPRTTALLRSIPSVKAAMFAELPPGSRLVRHRDPYAG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895  163 SLRYHLGLATPNDDRCFIEVDGQRHSWRDGQGVVFDETYLHWAQNTSDKDRLILFCDIERPMKYGWAQRVNKWLGRKVMT 242
Cdd:NF033391 161 SLRYHLGLATPNDDRCFIEVDGQRYSWRDGEAVVFDETYIHYAENKTDQNRIILFCDIERPMKYRWAQAVNRWFGRNLMS 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 17428895  243 AASSPNDEGDQTGGINKLFRYVWLMGQYRRRFKAWNRKVYYVVKFGLIIGGVALIIW 299
Cdd:NF033391 241 AAASPNDEGDRTGGINRLFKYVYAIRLKGKRLKKRNRTLYYLLKWALFGGIAALIIW 297
 
Name Accession Description Interval E-value
lipid_A_LpxO NF033391
lipid A hydroxylase LpxO; Members of this family are LpxO, an enzyme that modifies one of the ...
3-299 0e+00

lipid A hydroxylase LpxO; Members of this family are LpxO, an enzyme that modifies one of the lipid chains in lipid A by hydroxylation, with resulting changes in resistance to the host immune response and to the antibiotic colistin. This family, as built, includes LpxO1 from Pseudomonas aeruginosa, but not its paralog LpxO2.


Pssm-ID: 468010  Cd Length: 297  Bit Score: 622.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895    3 KWILVALYLGSILYVHFRGKVRLKFWRQMLDHSAVVAPVNCFMYAFSGVPQTPYVPVDHFPDLQKLQAAWPQIRDEALAL 82
Cdd:NF033391   1 KWIILAIFIASVLYVHFRGRVRHKFSRQLSDHSTFMAPINCFMYLFSRVPNTPYLPTEEFPELQPLQDNWEVIRDEALAL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895   83 TNLRKIKAAEKNDDAGFNSFFKNGWKRFYLKWYEANHPSAEQLCPKTVALLRELPSVKAAMFAELPPGGKLNPHRDPFAG 162
Cdd:NF033391  81 QEAGHIKAAEKYNDAGFNSFFKTGWKRFYLKWYDDAHPSAEALCPRTTALLRSIPSVKAAMFAELPPGSRLVRHRDPYAG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895  163 SLRYHLGLATPNDDRCFIEVDGQRHSWRDGQGVVFDETYLHWAQNTSDKDRLILFCDIERPMKYGWAQRVNKWLGRKVMT 242
Cdd:NF033391 161 SLRYHLGLATPNDDRCFIEVDGQRYSWRDGEAVVFDETYIHYAENKTDQNRIILFCDIERPMKYRWAQAVNRWFGRNLMS 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 17428895  243 AASSPNDEGDQTGGINKLFRYVWLMGQYRRRFKAWNRKVYYVVKFGLIIGGVALIIW 299
Cdd:NF033391 241 AAASPNDEGDRTGGINRLFKYVYAIRLKGKRLKKRNRTLYYLLKWALFGGIAALIIW 297
LpxO2 COG3555
Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily [Posttranslational modification, ...
46-285 5.80e-122

Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442776  Cd Length: 220  Bit Score: 348.02  E-value: 5.80e-122
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895  46 YAFSGVPQTPYVPVDHFPDLQKLQAAWPQIRDEALALtnLRKIKAAEKNDDAGF---NSFFKNGWKRFYLKWYEANHPSA 122
Cdd:COG3555   1 YRFSGLPTTPFFDRAQFPWLAELEANWPTIRAELLAL--LAEIEALPPYHDISFdqaNIFFDRGWKRFYLYWYGERHPSN 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895 123 EQLCPKTVALLRELPSVKAAMFAELPPGGKLNPHRDPFAGSLRYHLGLATPNDDRCFIEVDGQRHSWRDGQGVVFDETYL 202
Cdd:COG3555  79 CALCPKTAALLEQIPGVKAAMFSILPPGKHIPPHRGPYNGRLRYHLGLIVPNDDRCRIRVDGETYSWREGEAVLFDDTYE 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895 203 HWAQNTSDKDRLILFCDIERPMKYGWAQRVNKWLGRKVMTAASSPNdegdqtgginklfryvwlmgqYRRRFKAWNRKVY 282
Cdd:COG3555 159 HEAWNDTDETRVVLFCDVWRPMLSPWERAVNRLFAAILMRSAFVPN---------------------ARKNLKKWNKRLY 217

                ...
gi 17428895 283 YVV 285
Cdd:COG3555 218 YLL 220
Asp_Arg_Hydrox pfam05118
Aspartyl/Asparaginyl beta-hydroxylase; Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases ...
69-223 1.56e-64

Aspartyl/Asparaginyl beta-hydroxylase; Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyze oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalysing oxidation of a free alpha-amino acid. The structure of proline 3-hydroxylase contains the conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. This family represent the arginine, asparagine and proline hydroxylases. The aspartyl/asparaginyl beta-hydroxylase (EC:1.14.11.16) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins.


Pssm-ID: 461552  Cd Length: 157  Bit Score: 199.80  E-value: 1.56e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895    69 QAAWPQIRDEALALTNLRKIKAAEKNDDAGfnSFFKNGWKRFYLKWYEANHPSAEQLCPKTVALLRELP------SVKAA 142
Cdd:pfam05118   1 EANWQVIRDELLALLKQEEGLPPYEEEALD--DFGDIGWKTFYLYAYGARLPENCALCPKTAALLEQPGvkasgcPRGQA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895   143 MFAELPPGGKLNPHRDPFAGSLRYHLGLATPNDdrCFIEVDGQRHSWRDGQGVVFDETYLHWAQNTSDKDRLILFCDIER 222
Cdd:pfam05118  79 MFSRLQPGTHIPPHRGPTNGRLRCHLGLVVPPG--CRIRVGGETRTWREGECLLFDDSFEHEAWNETDEPRVVLLVDVWR 156

                  .
gi 17428895   223 P 223
Cdd:pfam05118 157 P 157
 
Name Accession Description Interval E-value
lipid_A_LpxO NF033391
lipid A hydroxylase LpxO; Members of this family are LpxO, an enzyme that modifies one of the ...
3-299 0e+00

lipid A hydroxylase LpxO; Members of this family are LpxO, an enzyme that modifies one of the lipid chains in lipid A by hydroxylation, with resulting changes in resistance to the host immune response and to the antibiotic colistin. This family, as built, includes LpxO1 from Pseudomonas aeruginosa, but not its paralog LpxO2.


Pssm-ID: 468010  Cd Length: 297  Bit Score: 622.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895    3 KWILVALYLGSILYVHFRGKVRLKFWRQMLDHSAVVAPVNCFMYAFSGVPQTPYVPVDHFPDLQKLQAAWPQIRDEALAL 82
Cdd:NF033391   1 KWIILAIFIASVLYVHFRGRVRHKFSRQLSDHSTFMAPINCFMYLFSRVPNTPYLPTEEFPELQPLQDNWEVIRDEALAL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895   83 TNLRKIKAAEKNDDAGFNSFFKNGWKRFYLKWYEANHPSAEQLCPKTVALLRELPSVKAAMFAELPPGGKLNPHRDPFAG 162
Cdd:NF033391  81 QEAGHIKAAEKYNDAGFNSFFKTGWKRFYLKWYDDAHPSAEALCPRTTALLRSIPSVKAAMFAELPPGSRLVRHRDPYAG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895  163 SLRYHLGLATPNDDRCFIEVDGQRHSWRDGQGVVFDETYLHWAQNTSDKDRLILFCDIERPMKYGWAQRVNKWLGRKVMT 242
Cdd:NF033391 161 SLRYHLGLATPNDDRCFIEVDGQRYSWRDGEAVVFDETYIHYAENKTDQNRIILFCDIERPMKYRWAQAVNRWFGRNLMS 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 17428895  243 AASSPNDEGDQTGGINKLFRYVWLMGQYRRRFKAWNRKVYYVVKFGLIIGGVALIIW 299
Cdd:NF033391 241 AAASPNDEGDRTGGINRLFKYVYAIRLKGKRLKKRNRTLYYLLKWALFGGIAALIIW 297
LpxO2 COG3555
Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily [Posttranslational modification, ...
46-285 5.80e-122

Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442776  Cd Length: 220  Bit Score: 348.02  E-value: 5.80e-122
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895  46 YAFSGVPQTPYVPVDHFPDLQKLQAAWPQIRDEALALtnLRKIKAAEKNDDAGF---NSFFKNGWKRFYLKWYEANHPSA 122
Cdd:COG3555   1 YRFSGLPTTPFFDRAQFPWLAELEANWPTIRAELLAL--LAEIEALPPYHDISFdqaNIFFDRGWKRFYLYWYGERHPSN 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895 123 EQLCPKTVALLRELPSVKAAMFAELPPGGKLNPHRDPFAGSLRYHLGLATPNDDRCFIEVDGQRHSWRDGQGVVFDETYL 202
Cdd:COG3555  79 CALCPKTAALLEQIPGVKAAMFSILPPGKHIPPHRGPYNGRLRYHLGLIVPNDDRCRIRVDGETYSWREGEAVLFDDTYE 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895 203 HWAQNTSDKDRLILFCDIERPMKYGWAQRVNKWLGRKVMTAASSPNdegdqtgginklfryvwlmgqYRRRFKAWNRKVY 282
Cdd:COG3555 159 HEAWNDTDETRVVLFCDVWRPMLSPWERAVNRLFAAILMRSAFVPN---------------------ARKNLKKWNKRLY 217

                ...
gi 17428895 283 YVV 285
Cdd:COG3555 218 YLL 220
Asp_Arg_Hydrox pfam05118
Aspartyl/Asparaginyl beta-hydroxylase; Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases ...
69-223 1.56e-64

Aspartyl/Asparaginyl beta-hydroxylase; Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyze oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalysing oxidation of a free alpha-amino acid. The structure of proline 3-hydroxylase contains the conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. This family represent the arginine, asparagine and proline hydroxylases. The aspartyl/asparaginyl beta-hydroxylase (EC:1.14.11.16) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins.


Pssm-ID: 461552  Cd Length: 157  Bit Score: 199.80  E-value: 1.56e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895    69 QAAWPQIRDEALALTNLRKIKAAEKNDDAGfnSFFKNGWKRFYLKWYEANHPSAEQLCPKTVALLRELP------SVKAA 142
Cdd:pfam05118   1 EANWQVIRDELLALLKQEEGLPPYEEEALD--DFGDIGWKTFYLYAYGARLPENCALCPKTAALLEQPGvkasgcPRGQA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17428895   143 MFAELPPGGKLNPHRDPFAGSLRYHLGLATPNDdrCFIEVDGQRHSWRDGQGVVFDETYLHWAQNTSDKDRLILFCDIER 222
Cdd:pfam05118  79 MFSRLQPGTHIPPHRGPTNGRLRCHLGLVVPPG--CRIRVGGETRTWREGECLLFDDSFEHEAWNETDEPRVVLLVDVWR 156

                  .
gi 17428895   223 P 223
Cdd:pfam05118 157 P 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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