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Conserved domains on  [gi|6735500|emb|CAB69071|]
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dsr S, partial [Leuconostoc mesenteroides]

Protein Classification

KxYKxGKxW signal peptide domain-containing protein( domain architecture ID 18337605)

KxYKxGKxW signal peptide domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KxYKxGKxW_sig pfam19258
KxYKxGKxW signal peptide; This entry represents a novel form of signal peptide that occurs as ...
5-40 3.07e-06

KxYKxGKxW signal peptide; This entry represents a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK signal peptide.


:

Pssm-ID: 466014 [Multi-domain]  Cd Length: 41  Bit Score: 39.40  E-value: 3.07e-06
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 6735500     5 EKVMRKKLYKVGKSWVVGGVCAFALTASFALATPSV 40
Cdd:pfam19258  1 ERKTHYKMYKSGKHWVFAGITTLGLGLGLLGGTTAA 36
 
Name Accession Description Interval E-value
KxYKxGKxW_sig pfam19258
KxYKxGKxW signal peptide; This entry represents a novel form of signal peptide that occurs as ...
5-40 3.07e-06

KxYKxGKxW signal peptide; This entry represents a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK signal peptide.


Pssm-ID: 466014 [Multi-domain]  Cd Length: 41  Bit Score: 39.40  E-value: 3.07e-06
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 6735500     5 EKVMRKKLYKVGKSWVVGGVCAFALTASFALATPSV 40
Cdd:pfam19258  1 ERKTHYKMYKSGKHWVFAGITTLGLGLGLLGGTTAA 36
KxYKxGKxW TIGR03715
KxYKxGKxW signal peptide; This model describes a novel form of signal peptide that occurs as ...
9-29 5.18e-05

KxYKxGKxW signal peptide; This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.


Pssm-ID: 274741 [Multi-domain]  Cd Length: 23  Bit Score: 35.83  E-value: 5.18e-05
                         10        20
                 ....*....|....*....|.
gi 6735500     9 RKKLYKVGKSWVVGGVCAFAL 29
Cdd:TIGR03715  3 RYKMYKSGKHWVFAGIATLAL 23
 
Name Accession Description Interval E-value
KxYKxGKxW_sig pfam19258
KxYKxGKxW signal peptide; This entry represents a novel form of signal peptide that occurs as ...
5-40 3.07e-06

KxYKxGKxW signal peptide; This entry represents a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK signal peptide.


Pssm-ID: 466014 [Multi-domain]  Cd Length: 41  Bit Score: 39.40  E-value: 3.07e-06
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 6735500     5 EKVMRKKLYKVGKSWVVGGVCAFALTASFALATPSV 40
Cdd:pfam19258  1 ERKTHYKMYKSGKHWVFAGITTLGLGLGLLGGTTAA 36
KxYKxGKxW TIGR03715
KxYKxGKxW signal peptide; This model describes a novel form of signal peptide that occurs as ...
9-29 5.18e-05

KxYKxGKxW signal peptide; This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.


Pssm-ID: 274741 [Multi-domain]  Cd Length: 23  Bit Score: 35.83  E-value: 5.18e-05
                         10        20
                 ....*....|....*....|.
gi 6735500     9 RKKLYKVGKSWVVGGVCAFAL 29
Cdd:TIGR03715  3 RYKMYKSGKHWVFAGIATLAL 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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