|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
3-933 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1738.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 3 TGFLQKIFGSRNQRLVKQYQKTVATINALETQIEKLTDDQLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRVLKMR 82
Cdd:COG0653 2 GKLLKKIFGSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGMR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 83 HFDVQMIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGME 162
Cdd:COG0653 82 HFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGMD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 163 HDQKQQAYAADITYGTNNEFGFDYLRDNMVYETDARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYVRMNAL 242
Cdd:COG0653 162 PEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINKL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 243 PPLLERqigeekadgtgvekPGDYTLDEKARQVFLTESGHEKAERLLaewGLigegESLYAPQNITLMHHVYAALRAHTL 322
Cdd:COG0653 242 VPRLKR--------------DGDYTVDEKARTVTLTEEGIEKVEKLL---GI----DNLYDPENIELVHHLNQALRAHAL 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 323 FHKDQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEAY 402
Cdd:COG0653 301 FKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAE 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 403 EFNEIYGLETVVIPTNRPPKRIDKQDQIYKTAKERYDAVIRDIRDCYERGQPVLVGTTSIENSELLSHLLKQAGLPHEVL 482
Cdd:COG0653 381 EFREIYGLDVVVIPTNRPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVL 460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 483 NAKQHEREAAIVAEAGRPKRITIATNMAGRGTDIVLGGNAEKQAAFIEADDSipaDEKARRIQKLHDEWETLHEEVKAAG 562
Cdd:COG0653 461 NAKQHEREAEIVAQAGRPGAVTIATNMAGRGTDIVLGGNPEFLAAAELADRG---LEWEEAIAKIKAEWQAEHEEVLEAG 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 563 GLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLDDPLLRIFAGDRVRSIMDRLKMPEGEAIEAGIVTRSIESAQR 642
Cdd:COG0653 538 GLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEPIEHKMVSKAIENAQK 617
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 643 KVEARNFDIRKQLLEYDDVSNDQRKVIYQQRNELLEAHDITETITAMRHGVITEVVRQFVPEGSIEEQWDVPELEEALRN 722
Cdd:COG0653 618 KVEGRNFDIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGSYPEQWDLEGLEEALKE 697
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 723 DWQLDLAIQEMVNEsSSITAEEILDAVTTAADEQYEAKVAMVGRESFSAFERSVMLQTVDRLWREHLAALDHLRQGIHLR 802
Cdd:COG0653 698 LFGLDLPIEEWLDE-EGLDEEELRERLLEAADEAYEEKEEELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLR 776
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 803 GYAQKNPKQEYKREAFELFAAMLDAIKQEVTRIVMNVQIQSPEQLEEAAEQIEErgghlenveyQHADYADAGAPVAnvt 882
Cdd:COG0653 777 GYAQKDPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEEEREEVEEERRE----------NHADPAGEEEEEA--- 843
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|.
gi 1900666687 883 taaaaatatadmvgsamtHGGPGGEMPKVGRNDPCPCGSGKKYKQCHGKLS 933
Cdd:COG0653 844 ------------------PKQPVRKGPKVGRNDPCPCGSGKKYKHCHGKLA 876
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
3-933 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1662.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 3 TGFLQKIFGSRNQRLVKQYQKTVATINALETQIEKLTDDQLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRVLKMR 82
Cdd:PRK12904 2 LGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGMR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 83 HFDVQMIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGME 162
Cdd:PRK12904 82 HFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 163 HDQKQQAYAADITYGTNNEFGFDYLRDNMVYETDARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYVRMNAL 242
Cdd:PRK12904 162 PEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKI 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 243 PPLLerqigeekadgtgvEKPGDYTLDEKARQVFLTESGHEKAERLLAEwgligegESLYAPQNITLMHHVYAALRAHTL 322
Cdd:PRK12904 242 VPTL--------------EKEGDYTVDEKSRTVGLTEEGIEKAEKLLGI-------ENLYDPENIALVHHLNQALRAHEL 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 323 FHKDQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEAY 402
Cdd:PRK12904 301 FKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAE 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 403 EFNEIYGLETVVIPTNRPPKRIDKQDQIYKTAKERYDAVIRDIRDCYERGQPVLVGTTSIENSELLSHLLKQAGLPHEVL 482
Cdd:PRK12904 381 EFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVL 460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 483 NAKQHEREAAIVAEAGRPKRITIATNMAGRGTDIVLGGNAEKQAAFIEaddsipADEKARRIQKLHDEWETLHEEVKAAG 562
Cdd:PRK12904 461 NAKNHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALL------EEETEEQIAKIKAEWQEEHEEVLEAG 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 563 GLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLDDPLLRIFAGDRVRSIMDRLKMPEGEAIEAGIVTRSIESAQR 642
Cdd:PRK12904 535 GLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQK 614
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 643 KVEARNFDIRKQLLEYDDVSNDQRKVIYQQRNELLEAHDITETITAMRHGVITEVVRQFVPEGSIEEQWDVPELEEALRN 722
Cdd:PRK12904 615 KVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKT 694
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 723 DWQLDLAIQEMVNEssSITAEEILDAVTTAADEQYEAKVAMVGRESFSAFERSVMLQTVDRLWREHLAALDHLRQGIHLR 802
Cdd:PRK12904 695 DFGLELPIEEWLEE--GLDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLR 772
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 803 GYAQKNPKQEYKREAFELFAAMLDAIKQEVTRIVMNVQIqspeqleeaaeqieergghlenveyqhadyadagapvanvt 882
Cdd:PRK12904 773 GYAQKDPLQEYKREGFELFEEMLDSIKEEVVRTLMKVQI----------------------------------------- 811
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|.
gi 1900666687 883 taaaaatatadmvgsamthggpggempkvgrnDPCPCGSGKKYKQCHGKLS 933
Cdd:PRK12904 812 --------------------------------DPCPCGSGKKYKHCHGRLA 830
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
28-828 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1173.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 28 INALETQIEKLTDDQLRGKTDEFRQRVAA-GESLDKLLPEAFAVCREASRRVLKMRHFDVQMIGGMVLHYGKIAEMRTGE 106
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAKqGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 107 GKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGMEHDQKQQAYAADITYGTNNEFGFDY 186
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 187 LRDNMVYETDARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYVRMNALPPLLERQigeekadgtgvekpGDY 266
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKE--------------VDY 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 267 TLDEKARQVFLTESGHEKAERLLAEwgligegESLYAPQNITLMHHVYAALRAHTLFHKDQHYVVQNGEVVIVDEFTGRL 346
Cdd:TIGR00963 227 EVDEKNRAVLLTEQGMKKAEDLLGV-------DNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRI 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 347 MAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEAYEFNEIYGLETVVIPTNRPPKRIDK 426
Cdd:TIGR00963 300 MEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDR 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 427 QDQIYKTAKERYDAVIRDIRDCYERGQPVLVGTTSIENSELLSHLLKQAGLPHEVLNAKQHEREAAIVAEAGRPKRITIA 506
Cdd:TIGR00963 380 PDLVYKTEEEKWKAVVEEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIA 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 507 TNMAGRGTDIVLggnaekqaafieaddsipadekarriqklhdewetlhEEVKAAGGLHIIGTERHESRRIDNQLRGRAG 586
Cdd:TIGR00963 460 TNMAGRGTDIKL-------------------------------------EEVKELGGLYVIGTERHESRRIDNQLRGRSG 502
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 587 RQGDPGSSRFYLSLDDPLLRIFAGDRVRSIMDRLKMPEGEAIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDDVSNDQR 666
Cdd:TIGR00963 503 RQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGMDDDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQR 582
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 667 KVIYQQRNELLEAHDITETITAMRHGVITEVVRQFVPEGSIEEQWDVPELEEALRNDWQLDLAIQEmvNESSSITAEEIL 746
Cdd:TIGR00963 583 EVIYAERRRVLESEDLSELILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLFLLDGDLTP--EDLENLTSEDLK 660
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 747 DAVTTAADEQYEAKVAMVGRESFSAFERSVMLQTVDRLWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAAMLD 826
Cdd:TIGR00963 661 ELLLEKIRAAYDEKEEQLESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLE 740
|
..
gi 1900666687 827 AI 828
Cdd:TIGR00963 741 DI 742
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
4-843 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 1160.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 4 GFLQKIFGSrNQRLVKQYQKTVATINALETQIEKLTDDQLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRVLKMRH 83
Cdd:PRK12906 3 NILKKWFDN-DKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGLRP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 84 FDVQMIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGMEH 163
Cdd:PRK12906 82 FDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 164 DQKQQAYAADITYGTNNEFGFDYLRDNMVYETDARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYVRMNALP 243
Cdd:PRK12906 162 DEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFV 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 244 PLLERQigeEKADGTGVEKPGDYTLDEKARQVFLTESGHEKAERLLAewgligeGESLYAPQNITLMHHVYAALRAHTLF 323
Cdd:PRK12906 242 KTLIKD---EAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFG-------LDNLYDSENTALAHHIDQALRANYIM 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 324 HKDQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEAYE 403
Cdd:PRK12906 312 LKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEE 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 404 FNEIYGLETVVIPTNRPPKRIDKQDQIYKTAKERYDAVIRDIRDCYERGQPVLVGTTSIENSELLSHLLKQAGLPHEVLN 483
Cdd:PRK12906 392 FREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLN 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 484 AKQHEREAAIVAEAGRPKRITIATNMAGRGTDIVLGGNaekqaafieaddsipadekarriqklhdewetlheeVKAAGG 563
Cdd:PRK12906 472 AKNHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLGPG------------------------------------VKELGG 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 564 LHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLDDPLLRIFAGDRVRSIMDRLKMP-EGEAIEAGIVTRSIESAQR 642
Cdd:PRK12906 516 LAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLDRLGMNdDDQVIESRMITRQVESAQK 595
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 643 KVEARNFDIRKQLLEYDDVSNDQRKVIYQQRNE-LLEAHDITETITAMRHGVITEVVRQFVPEGsiEEQWDVpeleEALR 721
Cdd:PRK12906 596 RVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQvINEDKDLKEVLMPMIKRTVDRQVQMYTQGD--KKDWDL----DALR 669
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 722 NDWQLDLAIQEMVNESSS--ITAEEILDAVTTAADEQYEAKVAMVGRES-FSAFERSVMLQTVDRLWREHLAALDHLRQG 798
Cdd:PRK12906 670 DFIVSAMPDEETFDFEDLkgKSPEELKKRLLDIVEDNYAEKEKQLGDPTqMLEFEKVVILRVVDSHWTDHIDAMDQLRQS 749
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 1900666687 799 IHLRGYAQKNPKQEYKREAFELFAAMLDAIKQEVTRIVMNVQIQS 843
Cdd:PRK12906 750 IGLRGYGQLNPLVEYQEEGYRMFEEMISNIDYDVTRLFMKAQIRQ 794
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
14-834 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 952.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 14 NQRLVKQYQKTVATINALETQIEKLTDDQLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRVLKMRHFDVQMIGGMV 93
Cdd:PRK09200 10 DKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPYDVQLIGALV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 94 LHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGMEH-DQKQQAYAA 172
Cdd:PRK09200 90 LHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDaSEKKAIYEA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 173 DITYGTNNEFGFDYLRDNMVYETDARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYVRMNALPPLLERQIge 252
Cdd:PRK09200 170 DIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDV-- 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 253 ekadgtgvekpgDYTLDEKARQVFLTESGHEKAERLlaeWGLigegESLYAPQNITLMHHVYAALRAHTLFHKDQHYVVQ 332
Cdd:PRK09200 248 ------------DYEFDEEKKEVWLTDQGIEKAESY---FGI----DNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVY 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 333 NGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEAYEFNEIYGLET 412
Cdd:PRK09200 309 DGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEV 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 413 VVIPTNRPPKRIDKQDQIYKTAKERYDAVIRDIRDCYERGQPVLVGTTSIENSELLSHLLKQAGLPHEVLNAKQHEREAA 492
Cdd:PRK09200 389 VQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQ 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 493 IVAEAGRPKRITIATNMAGRGTDIVLGgnaekqaafieaddsipadekarriqklhdewetlhEEVKAAGGLHIIGTERH 572
Cdd:PRK09200 469 IIAEAGQKGAVTVATNMAGRGTDIKLG------------------------------------EGVHELGGLAVIGTERM 512
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 573 ESRRIDNQLRGRAGRQGDPGSSRFYLSLDDPLLRIFAGDRVRSIMDRLK---MPEGEAIEAGIVTRSIESAQRKVEARNF 649
Cdd:PRK09200 513 ESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLKKKLKtdaQRLTGLLFNRKVHKIVVKAQRISEGAGY 592
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 650 DIRKQLLEYDDVSNDQRKVIYQQRNELLEA--HDITETITAMRHGVITEVVRQFVPEGSIEEQWDVPELEEALRNdwqlD 727
Cdd:PRK09200 593 SAREYALELDDVINIQRDVVYKERNRLLEEddRDLIDIVILMIDVYLEAVAEEYLLEKSLLEEWIYENLSFQLNE----I 668
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 728 LAIQEMVNEsssitaEEILDAVTTAADEQYEAKVAMVG-RESFSAFERSVMLQTVDRLWREHLAALDHLRQGIHLRGYAQ 806
Cdd:PRK09200 669 LSNTNFPDK------KEVVQFLLEEAEKQLKEKRNKLPsATLYNQFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQ 742
|
810 820
....*....|....*....|....*...
gi 1900666687 807 KNPKQEYKREAFELFAAMLDAIKQEVTR 834
Cdd:PRK09200 743 RNPIREYQKEALESFEYMYENIKKDMVR 770
|
|
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
6-841 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 948.66 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 6 LQKIFGsrNQRLVKQYQKTVATINALETQIEKLTDDQLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRVLKMRHFD 85
Cdd:CHL00122 2 FNNLFN--NKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHFD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 86 VQMIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGMEHDQ 165
Cdd:CHL00122 80 VQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 166 KQQAYAADITYGTNNEFGFDYLRDNMVYETDARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYVRMNALPPL 245
Cdd:CHL00122 160 RKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKY 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 246 LERQIgeekadgtgvekpgDYTLDEKARQVFLTESGHEKAERLLAEwgligegESLYAPQNiTLMHHVYAALRAHTLFHK 325
Cdd:CHL00122 240 LEKNV--------------HYEVDEKNKNVILTEQGILFIEKILKI-------EDLYSAND-PWIPYILNALKAKELFFK 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 326 DQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEAYEFN 405
Cdd:CHL00122 298 NVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFE 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 406 EIYGLETVVIPTNRPPKRIDKQDQIYKTAKERYDAVIRDIRDCYERGQPVLVGTTSIENSELLSHLLKQAGLPHEVLNAK 485
Cdd:CHL00122 378 KIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAK 457
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 486 QH--EREAAIVAEAGRPKRITIATNMAGRGTDIVLGGNAE-------------------------KQAAFIEADD----- 533
Cdd:CHL00122 458 PEnvRRESEIVAQAGRKGSITIATNMAGRGTDIILGGNPEfklkkelydlllsyksnekistisqNFLNILNSLKndlkf 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 534 ------------------SIPADEKARRIQKLHDEWETLH--------EEVKAAGGLHIIGTERHESRRIDNQLRGRAGR 587
Cdd:CHL00122 538 lslsdfenlkilneaseiSIPKNSYQLSLRFLYNELLEKYkklqekekKIVKKLGGLYVIGTERHESRRIDNQLRGRAGR 617
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 588 QGDPGSSRFYLSLDDPLLRIFAGDRVRSIMDRLKMPEgEAIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDDVSNDQRK 667
Cdd:CHL00122 618 QGDPGSSRFFLSLEDNLLRIFGGDKIQNLMQTLNLDD-EPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRK 696
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 668 VIYQQRNELLEAHDITETITAMRHGVITEVV-----RQFVPEGSIEEQWDVPELeeaLRNDWQLdlaIQEMVNESSSITA 742
Cdd:CHL00122 697 AIYSERRKILESQSLRDWILAYGEQVIDDIItflksRKNPNNKFINLINKFKEL---LKLPLCF---NKSDLNTLNSGEL 770
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 743 EEILDAVTTAADEQYEAKVAMVGRESFSAFERSVMLQTVDRLWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFA 822
Cdd:CHL00122 771 KKFLYQQFWISYDLKELYLEQIGTGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFI 850
|
890
....*....|....*....
gi 1900666687 823 AMLDAIKQEVTRIVMNVQI 841
Cdd:CHL00122 851 NMINHIRHLVIYDLFRSSI 869
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
5-931 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 932.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 5 FLQKIFGSRNQRLVKQYQKTVATINALETQIEKLTDDQLRGKTDEFRQRVA----------------AGES--------- 59
Cdd:PRK12901 4 FLKKLFGDKSERDLKEIQPIVEKIKAEYPELEALSNDELRAKTDEFKQYIKeavadidakieelkaeAIESldideredi 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 60 ------------------LDKLLPEAFAVCREASRRVLK----------------------------------------- 80
Cdd:PRK12901 84 yaqidklekeayeilekvLDEILPEAFAIVKETARRFAEneeievtatdfdrelaatkdfvtiegdkaiwknhwdaggne 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 81 ----MRHFDVQMIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVG- 155
Cdd:PRK12901 164 itwdMVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDc 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 156 INLSGMEHDQKQQAYAADITYGTNNEFGFDYLRDNMVYETDARVQRALNFAVVDEVDSILIDEARTPLIISG---QAEDH 232
Cdd:PRK12901 244 IDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGpvpKGDDQ 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 233 telyvRMNALPPLLER------------------QIGEEKADGTG----------------------------------- 259
Cdd:PRK12901 324 -----EFEELKPRVERlveaqrklatqflaeakkLIAEGDKKEGGlallrayrglpknkalikflseegikallqktenf 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 260 -----------VEKPGDYTLDEKARQVFLTESGHE-------------------KAERLLAEWGLIGE-----GESLYAP 304
Cdd:PRK12901 399 ymqdnnrempeVDEELYFVIDEKNNSVELTDKGIDyitgndedpdffvlpdigtELAEIENEGGLDEEeeaekKEELFQD 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 305 QNITL--MHHVYAALRAHTLFHKDQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQN 382
Cdd:PRK12901 479 YSVKSerVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQN 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 383 YFRMYAKLAGMTGTADTEAYEFNEIYGLETVVIPTNRPPKRIDKQDQIYKTAKERYDAVIRDIRDCYERGQPVLVGTTSI 462
Cdd:PRK12901 559 YFRMYHKLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSV 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 463 ENSELLSHLLKQAGLPHEVLNAKQHEREAAIVAEAGRPKRITIATNMAGRGTDIVLGgnaekqaafieaddsipadekar 542
Cdd:PRK12901 639 EISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLS----------------------- 695
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 543 riqklhdewetlhEEVKAAGGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLDDPLLRIFAGDRVRSIMDRLKM 622
Cdd:PRK12901 696 -------------PEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGL 762
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 623 PEGEAIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDDVSNDQRKVIYQQRNELLEAHDITETITAMRHGVITEVVRQFV 702
Cdd:PRK12901 763 KEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMGERLGMDIANMIYDVCEAIVENNK 842
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 703 PEGSIEeqwdvpELEEALRNDWQLDLAIQEmvNESSSITAEEILDAVTTAADEQYEAKVAMV------------------ 764
Cdd:PRK12901 843 VANDYK------GFKFELIRTLAMESPITE--EEFNKLKKDELTDKLYDAALENYQRKMERIaeiafpvikqvyeeqgnm 914
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 765 ----------------------------GRESFSAFERSVMLQTVDRLWREHLAALDHLRQGIHLRGYAQKNPKQEYKRE 816
Cdd:PRK12901 915 yerivvpftdgkrtlnvvtnlkeayeteGKEIVKDFEKNITLHIIDEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFE 994
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 817 AFELFAAMLDAIKQEVTRIVMNVQI--QSPEQLEEAAEQ------IEERGGHLENVEYQHADYADAGAPVANVttaaaaa 888
Cdd:PRK12901 995 SFELFKNMVDKVNREVISFLFKGEIpvQEAPEIREAAPErrldpkYRTQKEEIQDSDQRAAASRDTGAQVKET------- 1067
|
1130 1140 1150 1160
....*....|....*....|....*....|....*....|....*...
gi 1900666687 889 tatadmvgsamthggPGGEMPKVGRNDPCPC-----GSGKKYKQCHGK 931
Cdd:PRK12901 1068 ---------------PVRVEKKIGRNDPVPCqnvdgGSGKKYKFKHAE 1100
|
|
| SecA2_Bac_anthr |
TIGR04397 |
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in ... |
6-838 |
0e+00 |
|
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in genomes with the preprotein translocase SecA (TIGR00963) and closely resemble it, hence the designation SecA2. However, this appears to mark a different type of accessory Sec system SecA2 (TIGR03714) from the serine-rich glycoprotein type found in Staphylococcus and Streptococcus, and the actinobacterial SecA2 (TIGR04221). This type occurs in species including Bacillus anthracis, Geobacillus thermoglucosidasius, Solibacillus silvestris, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 275190 [Multi-domain] Cd Length: 774 Bit Score: 916.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 6 LQKIFGSRNQRLVKQYQKTVATINALETQIEKLTDDQLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRVLKMRHFD 85
Cdd:TIGR04397 1 VKKLKGDSSARELKRYEKLVAQINELEPKMEKLSDEELRQKTITFKERLEDGKTVDDIKVEAFAVVREASKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 86 VQMIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGMEHDQ 165
Cdd:TIGR04397 81 VQLIGGLVLLEGNIAEMPTGEGKTLVASLPSYLRALEGKGVHVITVNDYLARRDRELIGQIHEFLGLTVGLNVPMMEASE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 166 KQQAYAADITYGTNNEFGFDYLRDNMVYETDARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYvrmnalpPL 245
Cdd:TIGR04397 161 KKEAYQADITYGVGTEFGFDYLRDNMVYSLSDKVQRPYHFAIIDEIDSVLIDEAKTPLIIAGKTGSSSELH-------YI 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 246 LERQIGEekadgtgVEKPGDYTLDEKARQVFLTESGHEKAERLLAEwgligegESLYAPQNITLMHHVYAALRAHTLFHK 325
Cdd:TIGR04397 234 CARIIKS-------FEETEDYEYDPETKAASLTEEGITKIERAFGI-------DNLYDLEHQTLYHYLIQALRAHVLFKR 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 326 DQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEAYEFN 405
Cdd:TIGR04397 300 DVDYIVKDGKIELVDMFTGRIMEGRSLSDGLHQAIEAKEGLEITEENKTQASITIQNYFRMYPKLSGMTGTAKTEEKEFR 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 406 EIYGLETVVIPTNRPPKRIDKQDQIYKTAKERYDAVIRDIRDCYERGQPVLVGTTSIENSELLSHLLKQAGLPHEVLNAK 485
Cdd:TIGR04397 380 ETYGMDVVQIPTNRPRIRVDWPDRVFMTYEAKYKAVAKEVKKRHETGQPILIGTTSILQSETVAKYLDKEKIPYQLLNAK 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 486 QHEREAAIVAEAGRPKRITIATNMAGRGTDIVLGgnaekqaafieaddsipadekarriqklhdewetlhEEVKAAGGLH 565
Cdd:TIGR04397 460 TVEQEADLIALAGQKGQVTIATNMAGRGTDILLG------------------------------------EGVHELGGLH 503
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 566 IIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLDDPLLRIFAGDRVRSIMDRLKMPEGEAIEAGIVTRSIESAQRKVE 645
Cdd:TIGR04397 504 VIGTERHESRRIDNQLRGRSGRQGDPGSSQFIISLEDDMFRRYAAEELEKWKKKLKTDETGEILNKDVHEFVDKVQRIIE 583
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 646 ARNFDIRKQLLEYDDVSNDQRKVIYQQRNELLEAHDITETITAMRHGVITEVVRQFVPEGSIEEQWDVPELEEALRndwq 725
Cdd:TIGR04397 584 GSHYSAREYNLKLDDVINEQRNVIYQLRDKLLEEEDAISEVLKMIRSAVEQIIDQYCPEEVLPEEWDLERLTEELN---- 659
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 726 lDLAIQEMVNESSSITAEEILDAVTTAADEQYEAKVA-MVGRESFSAFERSVMLQTVDRLWREHLAALDHLRQGIHLRGY 804
Cdd:TIGR04397 660 -RIFPVTFVTFDKRIADKEELKDLVKDTYEQYIAALEkLPENEEIQMRLKHVMLSVIDAHWTRHLDAMNLLKEGIGLRSY 738
|
810 820 830
....*....|....*....|....*....|....
gi 1900666687 805 AQKNPKQEYKREAFELFAAMLDAIKQEVTRIVMN 838
Cdd:TIGR04397 739 QQEDPMRLYQKEGLELFEAMYQNIEREICTELAR 772
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
5-841 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 895.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 5 FLQKIFGSRNqRLVKQYQKTVATINALETQIEKLTDDQLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRVLKMRHF 84
Cdd:PRK12903 2 KFLKLFFFKS-TEMRIAEKILKQINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 85 DVQMIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGMEHD 164
Cdd:PRK12903 81 DVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 165 QKQQAYAADITYGTNNEFGFDYLRDNMVYETDARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYVRMNALPP 244
Cdd:PRK12903 161 LKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 245 LLerqigeekadgtgveKPGDYTLDEKARQVFLTESGHEKAERLLAEwgligegESLYAPQNITLMHHVYAALRAHTLFH 324
Cdd:PRK12903 241 TL---------------KEDDYKIDEETKAISLTEKGIKKANKFFKL-------KNLYDIENSELVHRIQNALRAHKVMK 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 325 KDQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEAYEF 404
Cdd:PRK12903 299 EDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEF 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 405 NEIYGLETVVIPTNRPPKRIDKQDQIYKTAKERYDAVIRDIRDCYERGQPVLVGTTSIENSELLSHLLKQAGLPHEVLNA 484
Cdd:PRK12903 379 IDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNA 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 485 KQHEREAAIVAEAGRPKRITIATNMAGRGTDIVLGgnaekqaafieaddsipadekarriqklhdewetlhEEVKAAGGL 564
Cdd:PRK12903 459 KQNAREAEIIAKAGQKGAITIATNMAGRGTDIKLS------------------------------------KEVLELGGL 502
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 565 HIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLDDPLLRIFAG-DRVRSIMDRLKmpeGEAIEAGIVTRSIESAQRK 643
Cdd:PRK12903 503 YVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFSNfDKIKEAFKKLG---DDEIKSKFFSKALLNAQKK 579
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 644 VEARNFDIRKQLLEYDDVSNDQRKVIYQQRNELLEAHDITETITAMrhgvITEVVRQFV-------PEGSIeeqwDVPEL 716
Cdd:PRK12903 580 IEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIADDLSHVIEKM----ISRAVEQILknsfiilKNNTI----NYKEL 651
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 717 EEALRNDWQLDLAIQEMVNESSSITAEEILDAVTTAADEQYEAKVAM----VGRESFSAFERSVMLQTVDRLWREHLAAL 792
Cdd:PRK12903 652 VEFLNDNLLRITHFKFSEKDFENYHKEELAQYLIEALNEIYFKKRQVildkIALNTFFESERYIILSALDKYWQNHIDTM 731
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 1900666687 793 DHLRQGIHLRGYAQKNPKQEYKREAFELFAAMLDAIKQEVTRIVMNVQI 841
Cdd:PRK12903 732 DKLRSGVNLVQYSQKNPYQVYTEEGTKKFNILLQEIAYDVIVSLFNNPN 780
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-405 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 765.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 6 LQKIFGSRNQRLVKQYQKTVATINALETQIEKLTDDQLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRVLKMRHFD 85
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 86 VQMIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGMEHDQ 165
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 166 KQQAYAADITYGTNNEFGFDYLRDNMVYETDARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDH-TELYVRMNALPP 244
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDEsSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 245 LLERQIgeekadgtgvekpgDYTLDEKARQVFLTESGHEKAERLLAEwgligegESLYAPQNITLMHHVYAALRAHTLFH 324
Cdd:smart00957 241 RLKEDE--------------DYTVDEKSRTVELTEEGIEKAEKLLGI-------DNLYDPENIELLHHVNQALRAHYLFK 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 325 KDQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEAYEF 404
Cdd:smart00957 300 RDVDYIVRDGEVVIVDEFTGRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEF 379
|
.
gi 1900666687 405 N 405
Cdd:smart00957 380 R 380
|
|
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
14-829 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 719.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 14 NQRLvKQYQKTVATINALETQIEKLTDDQLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRVLKMRHFDVQMIGGMV 93
Cdd:TIGR03714 3 NLRL-KKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 94 LHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSG-----MEHDQKQQ 168
Cdd:TIGR03714 82 LHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDdpdeeYDANEKRK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 169 AYAADITYGTNNEFGFDYLRDNMVYETDARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYVRMNALPPLLER 248
Cdd:TIGR03714 162 IYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 249 QIgeekadgtgvekpgDYTLDEKARQVFLTESGHEKAERLLaewGLigegESLYAPQNITLMHHVYAALRAHTLFHKDQH 328
Cdd:TIGR03714 242 DV--------------DYIFKKDKKEVWLTDKGIEKAEQYF---KI----DNLYSEEYFELVRHINLALRAHYLFKRNKD 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 329 YVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEAYEFNEIY 408
Cdd:TIGR03714 301 YVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETY 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 409 GLETVVIPTNRPPKRIDKQDQIYKTAKERYDAVIRDIRDCYERGQPVLVGTTSIENSELLSHLLKQAGLPHEVLNAKQHE 488
Cdd:TIGR03714 381 SLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAA 460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 489 REAAIVAEAGRPKRITIATNMAGRGTDIVLGgnaekqaafieaddsipadekarriqklhdewetlhEEVKAAGGLHIIG 568
Cdd:TIGR03714 461 KEAQIIAEAGQKGAVTVATSMAGRGTDIKLG------------------------------------KGVAELGGLAVIG 504
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 569 TERHESRRIDNQLRGRAGRQGDPGSSRFYLSLDDPLLRIFAGDRVRSIMDRLKMPEG----EAIEAGIVTRSIESAQRKV 644
Cdd:TIGR03714 505 TERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVKDSklkpSALFKRRFRKIVEKAQRAS 584
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 645 EARNFDIRKQLLEYDDVSNDQRKVIYQQRNELLEAHDITETitaMRHGVITEVVRQFVPEGSIEEQWDVPE--LEealrn 722
Cdd:TIGR03714 585 EDKGESAREQTNEFEESLSIQRENIYAERNRLIEGSDFLDD---DVDQIIDDVFNMYAEEQDLSNKSLLKRfiLE----- 656
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 723 dwQLDLAIQEMVNESSSITAEEILDAVTTAADEQYEAKVAMVGRES-FSAFERSVMLQTVDRLWREHLAALDHLRQGIHL 801
Cdd:TIGR03714 657 --NLSYQFKNDPDEFDLKNKEAIKDFLKEIADKELSEKKKVLNNDYlFNDFERLSILKAIDENWIEQVDYLQQLKTVVTN 734
|
810 820
....*....|....*....|....*...
gi 1900666687 802 RGYAQKNPKQEYKREAFELFAAMLDAIK 829
Cdd:TIGR03714 735 RQNGQRNPIFEYHKEALESYEYMKKEIK 762
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-404 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 700.02 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 6 LQKIFGSRNQRLVKQYQKTVATINALETQIEKLTDDQLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRVLKMRHFD 85
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 86 VQMIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGMEHDQ 165
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 166 KQQAYAADITYGTNNEFGFDYLRDNMVYETDARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYVRMNALPPL 245
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 246 LerqigeekadgtgvEKPGDYTLDEKARQVFLTESGHEKAERLLaewgligEGESLYAPQNITLMHHVYAALRAHTLFHK 325
Cdd:pfam07517 241 L--------------EEDGDYEIDEKSKNVELTEKGIEKIEKLL-------GIDNLYDPENVELLHHINQALKAHHLFKR 299
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1900666687 326 DQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEAYEF 404
Cdd:pfam07517 300 DVDYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
11-659 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 685.59 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 11 GSRNQRLVKQYQKTVATINALETQIEKLTDDQLRGKTDEFRQRVAAGESL-DKLLPEAFAVCREASRRVLKMRHFDVQMI 89
Cdd:PRK12898 31 GRVRGRAARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLRARDGFrDALLAEAFALVREASGRVLGQRHFDVQLM 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 90 GGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGMEHDQKQQA 169
Cdd:PRK12898 111 GGLALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAA 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 170 YAADITYGTNNEFGFDYLRDNMVYETDAR-------------------VQRALNFAVVDEVDSILIDEARTPLIISGQAE 230
Cdd:PRK12898 191 YGADITYCTNKELVFDYLRDRLALGQRASdarlaleslhgrssrstqlLLRGLHFAIVDEADSVLIDEARTPLIISAPAK 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 231 DHTELYVRMNALPplLERQIGEEKadgtgvekpgDYTLDEKARQVFLTESGHEKAERLLAEWGLIGEGEslyapqnITLM 310
Cdd:PRK12898 271 EADEAEVYRQALE--LAAQLKEGE----------DYTIDAAEKRIELTEAGRARIAELAESLPPAWRGA-------VRRE 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 311 HHVYAALRAHTLFHKDQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKL 390
Cdd:PRK12898 332 ELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRL 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 391 AGMTGTADTEAYEFNEIYGLETVVIPTNRPPKRIDKQDQIYKTAKERYDAVIRDIRDCYERGQPVLVGTTSIENSELLSH 470
Cdd:PRK12898 412 AGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSA 491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 471 LLKQAGLPHEVLNAKQHEREAAIVAEAGRPKRITIATNMAGRGTDIVLGgnaekqaafieaddsipadekarriqklhde 550
Cdd:PRK12898 492 LLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLE------------------------------- 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 551 wetlhEEVKAAGGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLDDPLLRIFAGDRVRSI--MDRLKMPEGEAI 628
Cdd:PRK12898 541 -----PGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFLGSRGLAIrrMELLGPRGGRAL 615
|
650 660 670
....*....|....*....|....*....|.
gi 1900666687 629 EAGIVTRsiesAQRKVEARNFDIRKQLLEYD 659
Cdd:PRK12898 616 GALLLRR----AQRRAERLHARARRALLHAD 642
|
|
| SecA2_Mycobac |
TIGR04221 |
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the ... |
8-824 |
0e+00 |
|
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714).
Pssm-ID: 275062 [Multi-domain] Cd Length: 762 Bit Score: 549.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 8 KIFGSRNQRLVKQYQKTVATINALETQIEKLTDDQLRgktDEFRQRVAAGESLDKllPEAFAVCREASRRVLKMRHFDVQ 87
Cdd:TIGR04221 7 KALGSSTERNQKRSLAIVPAAASRMKELSALDDEELT---KAARDLVLSGEAADA--AQFLAILREAAERTLGMRPFDVQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 88 MIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGMEHDQKQ 167
Cdd:TIGR04221 82 LLGALRLLAGDVIEMATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDERR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 168 QAYAADITYGTNNEFGFDYLRDNMVYETDARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDhtelyvrmnalppllE 247
Cdd:TIGR04221 162 AAYACDVTYASVNEIGFDVLRDQLVTDRADLVQPAADVALIDEADSVLVDEALVPLVLAGNEPG---------------E 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 248 RQIGEEKADGTGVEKPGDYTLDEKARQVFLTESGHEKAERLLAewgligeGESLYAPQNI-TLMHHVYAALRAHTLFHKD 326
Cdd:TIGR04221 227 APRGRITDLVRRLREDKHYTVDEDGRNVHLTEDGARAVEAELG-------IDDLYSEEHVgTTLVQVNVALHAHALLIRD 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 327 QHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEAYEFNE 406
Cdd:TIGR04221 300 VHYIVRDGKVALIDASRGRVAQLQRWPDGLQAAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQ 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 407 IYGLETVVIPTNRPPKRIDKQDQIYKTAKERYDAVIRDIRDCYERGQPVLVGTTSIENSELLSHLLKQAGLPHEVLNAKQ 486
Cdd:TIGR04221 380 FYDLGVSVIPPNTPNIRFDEADRVYATAAEKNDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALLEAGVPCNVLNAKN 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 487 HEREAAIVAEAGRPKRITIATNMAGRGTDIVLGGnaekqaafieADdsipadekarriqklhdewETLHEEVKAAGGLHI 566
Cdd:TIGR04221 460 DAEEAAIIAEAGDIGAVTVSTQMAGRGTDIRLGG----------SD-------------------EADHDRVAELGGLHV 510
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 567 IGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSL-DDPLLRIFAGDRVRSIMDrlkmpEGEAIEAGIVTRSIESAQRKVE 645
Cdd:TIGR04221 511 IGTGRHRTARLDNQLRGRAGRQGDPGSSVFFVSLeDDVVAVGGAGETVPAQPA-----EDGRIESPRVQDFVDHAQRVAE 585
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 646 ARNFDIRKQLLEYDDVSNDQRKVIYQQRNELLEAhditetitamrhgvitevvrqfvpegsieeqwdvpeleealrndwq 725
Cdd:TIGR04221 586 GQLLEIHANTWRYNQLIAQQRDIIDERRETLLDT---------------------------------------------- 619
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 726 lDLAIQEMVNESSsitaeeildavttaadEQYEAKVAMVGRESFSAFERSVMLQTVDRLWREHLAALDHLRQGIHLRGYA 805
Cdd:TIGR04221 620 -DTAWQELSERAA----------------DRAAELKKEVSEDALERAAREIMLYHLDRGWAEHLAYLDDVRESIHLRALG 682
|
810
....*....|....*....
gi 1900666687 806 QKNPKQEYKREAFELFAAM 824
Cdd:TIGR04221 683 RETPLDEFHRMAVRAFKEL 701
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
42-417 |
3.14e-134 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 401.14 E-value: 3.14e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 42 QLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRVLKMRHFDVQMIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNAL 121
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 122 AGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGMEHDQKQQAYAADITYGTNNEFGFDYLRDNMVYETDARVQR 201
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 202 ALNFAVVDEVDSILIDEARTPLIISGqaedhtelyvrmnalppllerqigeekadgtgvekpgdytldekarqvfltesg 281
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 282 hekaerllaewgligegeslyapqnitlmhhvyaalrahtlfhkdqhyvvqngevvivdeftgrlmagrrwsdglhqave 361
Cdd:cd17928 --------------------------------------------------------------------------------
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1900666687 362 akehvkiqsenqTLASITFQNYFRMYAKLAGMTGTADTEAYEFNEIYGLETVVIPT 417
Cdd:cd17928 187 ------------TLATITFQNYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
627-840 |
4.42e-103 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 319.44 E-value: 4.42e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 627 AIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDDVSNDQRKVIYQQRNELLEAHDITETITAMRHGVITEVVRQFVPEGS 706
Cdd:pfam07516 1 PIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNQQREVIYAQRREILEGEDLKEDILEMIEDVVDDIVDEYIPPEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 707 IEEQWDVPELEEALRNDWQLDLAIQEmVNESSSITAEEILDAVTTAADEQYEAKVAMVGRESFSAFERSVMLQTVDRLWR 786
Cdd:pfam07516 81 SPEEWDLEGLKEALNEIFGLELPISE-WEEEEDLDKEELKERLLEAAEEAYEEKEEEIGPELMRELERVVLLQVIDSKWK 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1900666687 787 EHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAAMLDAIKQEVTRIVMNVQ 840
Cdd:pfam07516 160 EHLDAMDQLRQGIGLRAYGQKDPLVEYKREGFELFEEMLDAIREEVVRYLFRVQ 213
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
423-599 |
8.90e-81 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 257.48 E-value: 8.90e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 423 RIDKQDQIYKTAKERYDAVIRDIRDCYERGQPVLVGTTSIENSELLSHLLKQAGLPHEVLNAKQHEREAAIVAEAGRPKR 502
Cdd:cd18803 1 RKDLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAKNHAREAEIIAEAGQKGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 503 ITIATNMAGRGTDIVLGGNaekqaafieaddsipadekarriqklhdewetlheeVKAAGGLHIIGTERHESRRIDNQLR 582
Cdd:cd18803 81 VTIATNMAGRGTDIKLGGN------------------------------------VEELGGLHVIGTERHESRRIDNQLR 124
|
170
....*....|....*..
gi 1900666687 583 GRAGRQGDPGSSRFYLS 599
Cdd:cd18803 125 GRAGRQGDPGSSRFYLS 141
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
228-361 |
1.35e-57 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 193.05 E-value: 1.35e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 228 QAEDHTELYVRMNALPPLLERQigeekadgtgvekPGDYTLDEKARQVFLTESGHEKAERLLAEwgligegESLYAPQNI 307
Cdd:smart00958 1 PAEDSSELYKRADELVPTLKKD-------------EEDYEVDEKSRQVALTEEGIEKAEKLLGI-------DNLYDPENI 60
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1900666687 308 TLMHHVYAALRAHTLFHKDQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVE 361
Cdd:smart00958 61 ELVHHVNQALRAHKLFKRDVDYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
231-361 |
3.09e-54 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 183.38 E-value: 3.09e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 231 DHTELYVRMNALPPLLERQIgeekadgtgvekpgDYTLDEKARQVFLTESGHEKAERLLaewGLigegESLYAPQNITLM 310
Cdd:pfam01043 1 KSTELYRQADKFVKQLKEDE--------------DYEVDEKAKTVELTEEGIEKAEKLL---GI----DNLYDPENIELV 59
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1900666687 311 HHVYAALRAHTLFHKDQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVE 361
Cdd:pfam01043 60 HHINQALKAHHLFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
95-224 |
4.40e-18 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 81.68 E-value: 4.40e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 95 HYGKIAEMRTGEGKTLVATLPVYLNAL-AGRGVHVVTVNDYLAQRDAEWMARLYnFLGLSVGINLSG--MEHDQKQQAYA 171
Cdd:cd00046 1 GENVLITAPTGSGKTLAALLAALLLLLkKGKKVLVLVPTKALALQTAERLRELF-GPGIRVAVLVGGssAEEREKNKLGD 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1900666687 172 ADITYGTNNEFGFDYLRDnmvyetDARVQRALNFAVVDEVDSILIDEARTPLI 224
Cdd:cd00046 80 ADIIIATPDMLLNLLLRE------DRLFLKDLKLIIVDEAHALLIDSRGALIL 126
|
|
| YecA |
COG3318 |
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ... |
907-931 |
2.20e-13 |
|
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];
Pssm-ID: 442547 [Multi-domain] Cd Length: 45 Bit Score: 64.92 E-value: 2.20e-13
10 20
....*....|....*....|....*
gi 1900666687 907 EMPKVGRNDPCPCGSGKKYKQCHGK 931
Cdd:COG3318 20 AEPKVGRNDPCPCGSGKKYKKCCGA 44
|
|
| PRK05590 |
PRK05590 |
hypothetical protein; Provisional |
910-931 |
1.89e-12 |
|
hypothetical protein; Provisional
Pssm-ID: 235521 Cd Length: 166 Bit Score: 66.15 E-value: 1.89e-12
|
| SEC-C |
pfam02810 |
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ... |
913-931 |
1.03e-10 |
|
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.
Pssm-ID: 460704 [Multi-domain] Cd Length: 19 Bit Score: 57.10 E-value: 1.03e-10
|
| PRK01617 |
PRK01617 |
hypothetical protein; Provisional |
906-931 |
7.49e-10 |
|
hypothetical protein; Provisional
Pssm-ID: 234966 Cd Length: 154 Bit Score: 58.51 E-value: 7.49e-10
10 20
....*....|....*....|....*.
gi 1900666687 906 GEMPKVGRNDPCPCGSGKKYKQCHGK 931
Cdd:PRK01617 129 GTRPQFGRNDPCPCGSGKKFKKCCGQ 154
|
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
556-597 |
1.35e-08 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 51.78 E-value: 1.35e-08
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1900666687 556 EEVKAAGGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFY 597
Cdd:cd09300 17 TGFDAPELNTIIVDKNLRSYRGLNQAFGRANRIYTFGGIVTY 58
|
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
97-139 |
4.70e-08 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 50.98 E-value: 4.70e-08
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1900666687 97 GKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRD 139
Cdd:cd17912 1 NILHLGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAHEI 43
|
|
| SWIM_PBPRA1643 |
TIGR04102 |
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ... |
912-930 |
1.07e-07 |
|
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.
Pssm-ID: 200353 [Multi-domain] Cd Length: 108 Bit Score: 50.77 E-value: 1.07e-07
|
| PRK10396 |
PRK10396 |
hypothetical protein; Provisional |
910-928 |
1.58e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 236680 [Multi-domain] Cd Length: 221 Bit Score: 53.21 E-value: 1.58e-07
|
| PRK02250 |
PRK02250 |
hypothetical protein; Provisional |
910-930 |
6.12e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 179393 [Multi-domain] Cd Length: 166 Bit Score: 50.26 E-value: 6.12e-07
|
| PRK00183 |
PRK00183 |
hypothetical protein; Provisional |
910-928 |
5.56e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 166842 Cd Length: 157 Bit Score: 47.49 E-value: 5.56e-06
|
| PRK12318 |
PRK12318 |
methionyl aminopeptidase; |
911-929 |
1.36e-04 |
|
methionyl aminopeptidase;
Pssm-ID: 183434 [Multi-domain] Cd Length: 291 Bit Score: 44.81 E-value: 1.36e-04
|
| SF2_C_DEAD |
cd18787 |
C-terminal helicase domain of the DEAD box helicases; DEAD-box helicases comprise a diverse ... |
430-516 |
2.43e-04 |
|
C-terminal helicase domain of the DEAD box helicases; DEAD-box helicases comprise a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis, and RNA degradation. They are superfamily (SF)2 helicases that, similar to SF1, do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350174 [Multi-domain] Cd Length: 131 Bit Score: 41.72 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 430 IYKTAKERYDAVIRDIRDCYERGQPVLVGTTSIENSELLSHLLKQAGLPHEVLNAK--QHEREAAIVAEAGRPKRITIAT 507
Cdd:cd18787 5 YVVVEEEEKKLLLLLLLLEKLKPGKAIIFVNTKKRVDRLAELLEELGIKVAALHGDlsQEERERALKKFRSGKVRVLVAT 84
|
....*....
gi 1900666687 508 NMAGRGTDI 516
Cdd:cd18787 85 DVAARGLDI 93
|
|
| SSL2 |
COG1061 |
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair]; |
425-516 |
9.42e-04 |
|
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair];
Pssm-ID: 440681 [Multi-domain] Cd Length: 566 Bit Score: 43.09 E-value: 9.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 425 DKQDQIYKTAKERYDAVIRDIRDCYERGQPVLVGTTSIENSELLSHLLKQAGLPHEVLNAK--QHEREAAIVAEAGRPKR 502
Cdd:COG1061 278 ERLREALAADAERKDKILRELLREHPDDRKTLVFCSSVDHAEALAELLNEAGIRAAVVTGDtpKKEREEILEAFRDGELR 357
|
90
....*....|....
gi 1900666687 503 ITIATNMAGRGTDI 516
Cdd:COG1061 358 ILVTVDVLNEGVDV 371
|
|
| YchJ |
COG3012 |
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ... |
912-928 |
1.76e-03 |
|
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];
Pssm-ID: 442249 Cd Length: 144 Bit Score: 39.83 E-value: 1.76e-03
|
| DEAD |
pfam00270 |
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. ... |
99-215 |
6.97e-03 |
|
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Pssm-ID: 425570 [Multi-domain] Cd Length: 165 Bit Score: 38.38 E-value: 6.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900666687 99 IAEMRTGEGKTLVATLPVyLNALAGRGVHVVTVndY------LAQRDAEWMARLYNFLGLSVGINLSGME-HDQKQQAYA 171
Cdd:pfam00270 18 LVQAPTGSGKTLAFLLPA-LEALDKLDNGPQAL--VlaptreLAEQIYEELKKLGKGLGLKVASLLGGDSrKEQLEKLKG 94
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1900666687 172 ADITYGTnnefgFDYLRDNMVyetDARVQRALNFAVVDEVDSIL 215
Cdd:pfam00270 95 PDILVGT-----PGRLLDLLQ---ERKLLKNLKLLVLDEAHRLL 130
|
|
| |
