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Conserved domains on  [gi|5139439|emb|CAB45530|]
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40S ribosomal protein, partial [Globodera rostochiensis]

Protein Classification

eS25 family ribosomal protein( domain architecture ID 10505548)

eS25 family ribosomal protein likely plays a role in general protein synthesis

Gene Ontology:  GO:0003735
PubMed:  24524803
SCOP:  4007308

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S25 pfam03297
S25 ribosomal protein;
1-75 6.84e-31

S25 ribosomal protein;


:

Pssm-ID: 460876  Cd Length: 100  Bit Score: 103.86  E-value: 6.84e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5139439      1 KEKVRDKLSNMVLFDQATYDKLYKEIISVKLITPSVVSERLKVRASLAKAGLDELHQKGLIKCVVKHGSQLVYTR 75
Cdd:pfam03297  26 KGKVKDKLNNAVLFDKETYDKLLKEVPKYKLITPSVVSERLKINGSLARRALRELESKGLIKLVSKHHRQVIYTR 100
 
Name Accession Description Interval E-value
Ribosomal_S25 pfam03297
S25 ribosomal protein;
1-75 6.84e-31

S25 ribosomal protein;


Pssm-ID: 460876  Cd Length: 100  Bit Score: 103.86  E-value: 6.84e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5139439      1 KEKVRDKLSNMVLFDQATYDKLYKEIISVKLITPSVVSERLKVRASLAKAGLDELHQKGLIKCVVKHGSQLVYTR 75
Cdd:pfam03297  26 KGKVKDKLNNAVLFDKETYDKLLKEVPKYKLITPSVVSERLKINGSLARRALRELESKGLIKLVSKHHRQVIYTR 100
RPS25 COG4901
Ribosomal protein S25e [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 15-66 6.93e-06

Ribosomal protein S25e [Translation, ribosomal structure and biogenesis]; Ribosomal protein S25e is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 443929  Cd Length: 108  Bit Score: 40.43  E-value: 6.93e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 5139439   15 DQATYDKLYKEIISVKLITPSVVSERLKVRASLAKAGLDELHQKGLIKCVVK 66
Cdd:COG4901  46 TEELLKRVEKEIKKEKYVTPYTLAQKYNVKISVAKKILRELEKRGLLKLVSK 97
 
Name Accession Description Interval E-value
Ribosomal_S25 pfam03297
S25 ribosomal protein;
1-75 6.84e-31

S25 ribosomal protein;


Pssm-ID: 460876  Cd Length: 100  Bit Score: 103.86  E-value: 6.84e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5139439      1 KEKVRDKLSNMVLFDQATYDKLYKEIISVKLITPSVVSERLKVRASLAKAGLDELHQKGLIKCVVKHGSQLVYTR 75
Cdd:pfam03297  26 KGKVKDKLNNAVLFDKETYDKLLKEVPKYKLITPSVVSERLKINGSLARRALRELESKGLIKLVSKHHRQVIYTR 100
RPS25 COG4901
Ribosomal protein S25e [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 15-66 6.93e-06

Ribosomal protein S25e [Translation, ribosomal structure and biogenesis]; Ribosomal protein S25e is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 443929  Cd Length: 108  Bit Score: 40.43  E-value: 6.93e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 5139439   15 DQATYDKLYKEIISVKLITPSVVSERLKVRASLAKAGLDELHQKGLIKCVVK 66
Cdd:COG4901  46 TEELLKRVEKEIKKEKYVTPYTLAQKYNVKISVAKKILRELEKRGLLKLVSK 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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