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Conserved domains on  [gi|1815565457|emb|CAB1061213|]
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Mannosylglucosyl-3-phosphoglycerate synthase (EC [Olavius sp. associated proteobacterium Delta 1]

Protein Classification

glycosyltransferase family protein( domain architecture ID 56)

glycosyltransferase family protein may synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glycosyltransferase_GTB-type super family cl10013
glycosyltransferase family 1 and related proteins with GTB topology; Glycosyltransferases ...
2-284 5.35e-08

glycosyltransferase family 1 and related proteins with GTB topology; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.


The actual alignment was detected with superfamily member cd03801:

Pssm-ID: 471961 [Multi-domain]  Cd Length: 366  Bit Score: 54.85  E-value: 5.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815565457   2 KIAYLHYHL--KTGGVTTVLKQQLSAIGRQTEQL-VITGQTPQTPLDAATVHIPELGYSSDYNGtfkpvDAARAIIKAIR 78
Cdd:cd03801     1 KILLLSPELppPVGGAERHVRELARALAARGHDVtVLTPADPGEPPEELEDGVIVPLLPSLAAL-----LRARRLLRELR 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815565457  79 C-KFKGPCDILHVHNPtlaknRHFLAILKLLQQEGLSLLLQIHDFAedgrplaYYSDPYPADCHYGVINQRDYQIL---- 153
Cdd:cd03801    76 PlLRLRKFDVVHAHGL-----LAALLAALLALLLGAPLVVTLHGAE-------PGRLLLLLAAERRLLARAEALLRrada 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815565457 154 -------LKSGLKQDGLHLMENTVTIPN-IAKKPEIEDGTAVYPI-----------RAIRRKNVGEAI-LLSLFLEAGQT 213
Cdd:cd03801   144 viavseaLRDELRALGGIPPEKIVVIPNgVDLERFSPPLRRKLGIppdrpvllfvgRLSPRKGVDLLLeALAKLLRRGPD 223
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1815565457 214 VQITLPPNSPADIKSYRAWKNFVRDqnlNVAFDQGLS-HDFEALVLSAGLLISTSITEGFGFSFLEPWLFGK 284
Cdd:cd03801   224 VRLVIVGGDGPLRAELEELELGLGD---RVRFLGFVPdEELPALYAAADVFVLPSRYEGFGLVVLEAMAAGL 292
 
Name Accession Description Interval E-value
GT4_PimA-like cd03801
phosphatidyl-myo-inositol mannosyltransferase; This family is most closely related to the GT4 ...
2-284 5.35e-08

phosphatidyl-myo-inositol mannosyltransferase; This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.


Pssm-ID: 340831 [Multi-domain]  Cd Length: 366  Bit Score: 54.85  E-value: 5.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815565457   2 KIAYLHYHL--KTGGVTTVLKQQLSAIGRQTEQL-VITGQTPQTPLDAATVHIPELGYSSDYNGtfkpvDAARAIIKAIR 78
Cdd:cd03801     1 KILLLSPELppPVGGAERHVRELARALAARGHDVtVLTPADPGEPPEELEDGVIVPLLPSLAAL-----LRARRLLRELR 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815565457  79 C-KFKGPCDILHVHNPtlaknRHFLAILKLLQQEGLSLLLQIHDFAedgrplaYYSDPYPADCHYGVINQRDYQIL---- 153
Cdd:cd03801    76 PlLRLRKFDVVHAHGL-----LAALLAALLALLLGAPLVVTLHGAE-------PGRLLLLLAAERRLLARAEALLRrada 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815565457 154 -------LKSGLKQDGLHLMENTVTIPN-IAKKPEIEDGTAVYPI-----------RAIRRKNVGEAI-LLSLFLEAGQT 213
Cdd:cd03801   144 viavseaLRDELRALGGIPPEKIVVIPNgVDLERFSPPLRRKLGIppdrpvllfvgRLSPRKGVDLLLeALAKLLRRGPD 223
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1815565457 214 VQITLPPNSPADIKSYRAWKNFVRDqnlNVAFDQGLS-HDFEALVLSAGLLISTSITEGFGFSFLEPWLFGK 284
Cdd:cd03801   224 VRLVIVGGDGPLRAELEELELGLGD---RVRFLGFVPdEELPALYAAADVFVLPSRYEGFGLVVLEAMAAGL 292
 
Name Accession Description Interval E-value
GT4_PimA-like cd03801
phosphatidyl-myo-inositol mannosyltransferase; This family is most closely related to the GT4 ...
2-284 5.35e-08

phosphatidyl-myo-inositol mannosyltransferase; This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.


Pssm-ID: 340831 [Multi-domain]  Cd Length: 366  Bit Score: 54.85  E-value: 5.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815565457   2 KIAYLHYHL--KTGGVTTVLKQQLSAIGRQTEQL-VITGQTPQTPLDAATVHIPELGYSSDYNGtfkpvDAARAIIKAIR 78
Cdd:cd03801     1 KILLLSPELppPVGGAERHVRELARALAARGHDVtVLTPADPGEPPEELEDGVIVPLLPSLAAL-----LRARRLLRELR 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815565457  79 C-KFKGPCDILHVHNPtlaknRHFLAILKLLQQEGLSLLLQIHDFAedgrplaYYSDPYPADCHYGVINQRDYQIL---- 153
Cdd:cd03801    76 PlLRLRKFDVVHAHGL-----LAALLAALLALLLGAPLVVTLHGAE-------PGRLLLLLAAERRLLARAEALLRrada 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815565457 154 -------LKSGLKQDGLHLMENTVTIPN-IAKKPEIEDGTAVYPI-----------RAIRRKNVGEAI-LLSLFLEAGQT 213
Cdd:cd03801   144 viavseaLRDELRALGGIPPEKIVVIPNgVDLERFSPPLRRKLGIppdrpvllfvgRLSPRKGVDLLLeALAKLLRRGPD 223
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1815565457 214 VQITLPPNSPADIKSYRAWKNFVRDqnlNVAFDQGLS-HDFEALVLSAGLLISTSITEGFGFSFLEPWLFGK 284
Cdd:cd03801   224 VRLVIVGGDGPLRAELEELELGLGD---RVRFLGFVPdEELPALYAAADVFVLPSRYEGFGLVVLEAMAAGL 292
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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