NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1863066539|emb|CAA1332077|]
View 

ribosomal protein S5, partial [Hoploscopa sp. BC ZMBN Lep 00081]

Protein Classification

40S ribosomal protein S5( domain architecture ID 10201903)

40S ribosomal protein S5

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 13-190 5.14e-130

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


:

Pssm-ID: 271246  Cd Length: 185  Bit Score: 362.26  E-value: 5.14e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  13 KLFGRWSCYDVQVSDMSLQDYISVKekYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAF 92
Cdd:cd14867     1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  93 EILHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADEL 172
Cdd:cd14867    79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                         170
                  ....*....|....*...
gi 1863066539 173 LNA*KGSSNSYAIK*KDE 190
Cdd:cd14867   159 INAAKGSSNSYAIKKKDE 176
 
Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 13-190 5.14e-130

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 362.26  E-value: 5.14e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  13 KLFGRWSCYDVQVSDMSLQDYISVKekYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAF 92
Cdd:cd14867     1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  93 EILHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADEL 172
Cdd:cd14867    79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                         170
                  ....*....|....*...
gi 1863066539 173 LNA*KGSSNSYAIK*KDE 190
Cdd:cd14867   159 INAAKGSSNSYAIKKKDE 176
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 11-190 5.45e-119

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 334.81  E-value: 5.45e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  11 EIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKH 90
Cdd:PTZ00091    5 EPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  91 AFEILHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 170
Cdd:PTZ00091   85 AFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLAD 164

                         170       180
                  ....*....|....*....|
gi 1863066539 171 ELLNA*KGSSNSYAIK*KDE 190
Cdd:PTZ00091  165 EIINASKESSNSYAIKKKDE 184
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 11-190 2.72e-103

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 294.75  E-value: 2.72e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  11 EIKLFGRWSCYDVQVSDMSLQDYISVKEKYakyLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKH 90
Cdd:TIGR01028   1 EIKVFGKWSTEEVEVKDPSLKDYINLEPIY---VPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  91 AFEILHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 170
Cdd:TIGR01028  78 AFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAE 157

                         170       180
                  ....*....|....*....|
gi 1863066539 171 ELLNA*KGSSNSYAIK*KDE 190
Cdd:TIGR01028 158 EIILAANGDSKSYAIKKKEE 177
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 59-190 4.38e-52

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 163.32  E-value: 4.38e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  59 AQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAFEILHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSP 138
Cdd:pfam00177   1 YNSPLVEKLINRLMRDG----KKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRP 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1863066539 139 LRRVNQAIWLLCTGAReaaFRNIKTIAECVADELLNA*KGSsnSYAIK*KDE 190
Cdd:pfam00177  77 ERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANGR--GAAVKKKEE 123
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 58-190 2.64e-14

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 67.01  E-value: 2.64e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  58 KAQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAFEILHLLTGENPLQVLVTAIINSGPR-E-DSTRIGraGTVRRQAVD 135
Cdd:COG0049    17 KYNSVLVTKFINKIMLDG----KKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLvEvKSRRVG--GATYQVPVE 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1863066539 136 VSPLRRVNQAI-WLLcTGAREaafRNIKTIAECVADELLNA*KGSSNsyAIK*KDE 190
Cdd:COG0049    91 VRPERRQALAMrWII-DAARK---RKEKTMAERLANELLDASNNRGA--AVKKRED 140
 
Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 13-190 5.14e-130

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 362.26  E-value: 5.14e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  13 KLFGRWSCYDVQVSDMSLQDYISVKekYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAF 92
Cdd:cd14867     1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  93 EILHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADEL 172
Cdd:cd14867    79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                         170
                  ....*....|....*...
gi 1863066539 173 LNA*KGSSNSYAIK*KDE 190
Cdd:cd14867   159 INAAKGSSNSYAIKKKDE 176
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 11-190 5.45e-119

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 334.81  E-value: 5.45e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  11 EIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKH 90
Cdd:PTZ00091    5 EPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  91 AFEILHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 170
Cdd:PTZ00091   85 AFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLAD 164

                         170       180
                  ....*....|....*....|
gi 1863066539 171 ELLNA*KGSSNSYAIK*KDE 190
Cdd:PTZ00091  165 EIINASKESSNSYAIKKKDE 184
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 11-190 2.72e-103

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 294.75  E-value: 2.72e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  11 EIKLFGRWSCYDVQVSDMSLQDYISVKEKYakyLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKH 90
Cdd:TIGR01028   1 EIKVFGKWSTEEVEVKDPSLKDYINLEPIY---VPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  91 AFEILHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 170
Cdd:TIGR01028  78 AFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAE 157

                         170       180
                  ....*....|....*....|
gi 1863066539 171 ELLNA*KGSSNSYAIK*KDE 190
Cdd:TIGR01028 158 EIILAANGDSKSYAIKKKEE 177
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 2-190 1.87e-86

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 252.51  E-value: 1.87e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539   2 PLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYakyLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKK 81
Cdd:PRK04027    1 PESEEAEPMEIKLFGKWDVEEVEVRDPSLKRYINLTPVL---VPHTGGRHAKKQFGKAEVPIVERLINKLMRTERNTGKK 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  82 LMAVRIVKHAFEILHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNI 161
Cdd:PRK04027   78 QKAYNIVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASFKNK 157

                         170       180
                  ....*....|....*....|....*....
gi 1863066539 162 KTIAECVADELLNA*KGSSNSYAIK*KDE 190
Cdd:PRK04027  158 KSIEEALAEEIIAAANNDPKSYAVRKKEE 186
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 59-190 4.38e-52

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 163.32  E-value: 4.38e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  59 AQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAFEILHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSP 138
Cdd:pfam00177   1 YNSPLVEKLINRLMRDG----KKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRP 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1863066539 139 LRRVNQAIWLLCTGAReaaFRNIKTIAECVADELLNA*KGSsnSYAIK*KDE 190
Cdd:pfam00177  77 ERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANGR--GAAVKKKEE 123
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 58-190 2.64e-14

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 67.01  E-value: 2.64e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  58 KAQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAFEILHLLTGENPLQVLVTAIINSGPR-E-DSTRIGraGTVRRQAVD 135
Cdd:COG0049    17 KYNSVLVTKFINKIMLDG----KKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLvEvKSRRVG--GATYQVPVE 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1863066539 136 VSPLRRVNQAI-WLLcTGAREaafRNIKTIAECVADELLNA*KGSSNsyAIK*KDE 190
Cdd:COG0049    91 VRPERRQALAMrWII-DAARK---RKEKTMAERLANELLDASNNRGA--AVKKRED 140
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 63-190 1.28e-13

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 65.13  E-value: 1.28e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  63 IVERLTNSLMMHGrnngKKLMAVRIVKHAFEILHLLTGENPLQVLVTAIINSGPRED--STRIGraGTVRRQAVDVSPLR 140
Cdd:PRK05302   22 LVTKFINKLMLDG----KKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEvkSRRVG--GATYQVPVEVRPER 95

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1863066539 141 RVNQAI-WLLcTGAREaafRNIKTIAECVADELLNA*KGssNSYAIK*KDE 190
Cdd:PRK05302   96 RQALAMrWLV-EAARK---RGEKTMAERLANELLDAANN--RGAAVKKRED 140
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 66-190 4.95e-12

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 60.75  E-value: 4.95e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  66 RLTNSLMMHGRNNGKKLMAVRIVKHAFEILHLLTGENPLQVLVTAIINSGPRED--STRIGraGTVRRQAVDVSPLRRVN 143
Cdd:cd14871    13 RLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEvkARRVG--GSTYQVPVEVRSERGTA 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1863066539 144 QAI-WLLcTGAREaafRNIKTIAECVADELLNA*KGSSNsyAIK*KDE 190
Cdd:cd14871    91 LAIrWLL-KASRK---RSGRSMASKLANEIIDAAKNTGN--AIRKKEE 132
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 62-190 3.24e-11

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 58.74  E-value: 3.24e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  62 PIVERLTNSLMMHGrnngKKLMAVRIVKHAFEILHLLTGENPLQVLVTAIINSGP--REDSTRigRAGTVRRQAVdvsPL 139
Cdd:cd14868    23 PLLEQLTNLIMKHG----KKAKAQRIVSRALLHIHTLTRADPLPLLRQAIDSAAPlvKIKSQK--KGAKNVQVPV---PL 93

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1863066539 140 R---RVNQAI-WLLctgarEAA-FRNIKTIAECVADELLNA*KGSSNsyAIK*KDE 190
Cdd:cd14868    94 NerqRRRKAIkWIL-----EASdKRPGKSFSERLAEEIIAVVEGTSS--ALEKKEQ 142
rps7 CHL00053
ribosomal protein S7
 52-190 7.23e-11

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 57.59  E-value: 7.23e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863066539  52 AHKRFRKAQcPIVE-RLTNSLMMHGRNNGKKLMAVRIVKHAFEILHLLTGENPLQVLVTAIINSGPRED--STRIGraGT 128
Cdd:CHL00053    7 AKKRTAKPD-PIYRnRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEvkARRVG--GS 83

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1863066539 129 VRRQAVDVSPLRRVNQAI-WLLcTGAREAAFRNiktIAECVADELLNA*KGSSNsyAIK*KDE 190
Cdd:CHL00053   84 TYQVPIEIGSTRGKALAIrWLL-KASRKRSGRN---MAFKLSSELVDAAKGSGN--AIRKKEE 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH