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Standard Results
Full Results
NADH dehydrogenase subunit H (chloroplast) [Lysimachia fortunei]
Protein Classification
NADH dehydrogenase subunit 7 ( domain architecture ID 10000011 )
NADH dehydrogenase subunit 7, also called NAD(P)H-quinone oxidoreductase subunit H, is a component of NDH that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain
List of domain hits
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 900.99
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 1 MT L PATRKDLMIVNMGPHHPSMHGVLRLI L TLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V PATRKDLMIVNMGPHHPSMHGVLRLI V TLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 81 ITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 161 GG I AADLP H GWIDKCLDFCDYFL RE VAEYQKLITRNPIFLERVEGVGI VSE EEAINWGLSGPMLRASG L QWDLRKVDHYE 240
Cdd:CHL00017 161 GG V AADLP Y GWIDKCLDFCDYFL TG VAEYQKLITRNPIFLERVEGVGI IGG EEAINWGLSGPMLRASG I QWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 241 CYDEFDWEVQWQKEGDSLARYLVRI S EMTESIKIIQQALEGIPGGPYENLE T RRF AEVRNP EWNDF D YRFISKKPSPTFE 320
Cdd:CHL00017 241 CYDEFDWEVQWQKEGDSLARYLVRI G EMTESIKIIQQALEGIPGGPYENLE A RRF DREKDS EWNDF E YRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2453164054 321 LSKQELYVRVEAPKGELGIF M IGD QN VFPWRWKIRPPGF V NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIF L IGD DS VFPWRWKIRPPGF I NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 900.99
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 1 MT L PATRKDLMIVNMGPHHPSMHGVLRLI L TLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V PATRKDLMIVNMGPHHPSMHGVLRLI V TLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 81 ITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 161 GG I AADLP H GWIDKCLDFCDYFL RE VAEYQKLITRNPIFLERVEGVGI VSE EEAINWGLSGPMLRASG L QWDLRKVDHYE 240
Cdd:CHL00017 161 GG V AADLP Y GWIDKCLDFCDYFL TG VAEYQKLITRNPIFLERVEGVGI IGG EEAINWGLSGPMLRASG I QWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 241 CYDEFDWEVQWQKEGDSLARYLVRI S EMTESIKIIQQALEGIPGGPYENLE T RRF AEVRNP EWNDF D YRFISKKPSPTFE 320
Cdd:CHL00017 241 CYDEFDWEVQWQKEGDSLARYLVRI G EMTESIKIIQQALEGIPGGPYENLE A RRF DREKDS EWNDF E YRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2453164054 321 LSKQELYVRVEAPKGELGIF M IGD QN VFPWRWKIRPPGF V NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIF L IGD DS VFPWRWKIRPPGF I NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 592.43
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 7 RKDL M IV NMGP H HPS M HGVLRL I L T LDGE D V I D CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V N A P 86
Cdd:COG0649 3 ETEE M VL NMGP Q HPS T HGVLRL V L E LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V L A V 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 87 E Q L GN I Q VP K RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HNYFRIGG IAA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HNYFRIGG VRR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 167 LP H G WID K CLD F C DYF LREVA EY QK L I T R N P IF LE R VE GVG IV S E E E AI NW G LS GP M LRASG LQW DLRK VDH Y EC YDE F D 246
Cdd:COG0649 163 LP D G FLE K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK GVG VL S A E D AI AL G VT GP V LRASG VDY DLRK DEP Y SG YDE L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 247 WE V QWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L EGI P G GP Y e NLETRRF A EVRNP E WNDFDYRF I S -- K KPSPT F ELSKQ 324
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP V - MAKDPKI A PPPKE E MKTSMEAL I H hf K LVTEG F KVPAG 321
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2453164054 325 E L Y VR VE A P K GELG IFMIG D QNVF P W R W KIR P P G F V NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 322 E V Y AA VE S P R GELG FYLVS D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
1.06e-159
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 454.11
E-value: 1.06e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 9 DL MI V N M GP H HPS M HGVLRLIL T LDGE D V IDCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVN A P E Q 88
Cdd:TIGR01962 1 EF MI L N L GP Q HPS T HGVLRLIL E LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCL A V E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 89 L GN I Q VP K RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHN YFRIGG I A A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSA YFRIGG V A L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 169 HG W IDKCLD F CDY F LREVAE Y QK L ITR N P I FLE R VE GVG I VS EEE A IN WGL S GPMLR A SG LQ WD L RK VDH YE C YDE F D WE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ GVG V VS AKD A LD WGL T GPMLR G SG ID WD I RK SEP YE G YDE Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 249 V QWQKE GD SLA RYL V R IS EM T ESIKII Q Q A LE GI P G GP Y enletrrfa EVR NP E wndfd YRFIS K KPSP T -------- F E 320
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I --------- KAD NP K ----- LAPPP K ERML T smealihh F K 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 321 L SKQ ------- E L YV RV E A PKGELG IFM I G D QNVF P W R W KIR P P G F VN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 307 L VTE gfrvpag E V YV PI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
1.55e-142
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 406.00
E-value: 1.55e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H N YFR I GG I A A DLP H G WID K CLD F C DYF LREVA EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H S YFR P GG V A R DLP E G FLE K IRE F L DYF PKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 205 GVG IV S E E E A INW G LS GPMLRASG LQ WDLRK VDH Y EC YDE F D WE V QWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 GVG VL S A E D A LAL G VT GPMLRASG VP WDLRK DEP Y SG YDE L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 285 GP YEN l ETRRF A EVRNP E ---- WNDFDYR F is K KPSPT F ELSKQ E L YV R VEAPKGELG IFMIG D QNVF P W R W KIR P P G F V 360
Cdd:pfam00346 161 GP VMA - DDPKI A LPPKE E mkts MEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG FYLVS D GGTK P Y R V KIR A P S F A 237
250 260 270
....*....|....*....|....*....|...
gi 2453164054 361 NLQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 238 NLQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 900.99
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 1 MT L PATRKDLMIVNMGPHHPSMHGVLRLI L TLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V PATRKDLMIVNMGPHHPSMHGVLRLI V TLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 81 ITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 161 GG I AADLP H GWIDKCLDFCDYFL RE VAEYQKLITRNPIFLERVEGVGI VSE EEAINWGLSGPMLRASG L QWDLRKVDHYE 240
Cdd:CHL00017 161 GG V AADLP Y GWIDKCLDFCDYFL TG VAEYQKLITRNPIFLERVEGVGI IGG EEAINWGLSGPMLRASG I QWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 241 CYDEFDWEVQWQKEGDSLARYLVRI S EMTESIKIIQQALEGIPGGPYENLE T RRF AEVRNP EWNDF D YRFISKKPSPTFE 320
Cdd:CHL00017 241 CYDEFDWEVQWQKEGDSLARYLVRI G EMTESIKIIQQALEGIPGGPYENLE A RRF DREKDS EWNDF E YRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2453164054 321 LSKQELYVRVEAPKGELGIF M IGD QN VFPWRWKIRPPGF V NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIF L IGD DS VFPWRWKIRPPGF I NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
1-393
0e+00
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 750.03
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 1 M TLPA TR KDL M IV N M GPHHPSMHGVLRLI L TLDGEDV I DCEP IL GYLHRGMEKIAENRT IIQ Y L PYV T RWDY L A T MF T EA 80
Cdd:PRK07415 1 M AQLE TR TEP M VL N F GPHHPSMHGVLRLI V TLDGEDV V DCEP VI GYLHRGMEKIAENRT NVM Y V PYV S RWDY A A G MF N EA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 81 ITVNAPE Q L G NI Q VPKRASYIRVIMLEL S RIA S HLLWLGPF M AD I GAQTPFFYIFRERE L IYDL F EAATG M R MM - H NYFR 159
Cdd:PRK07415 81 ITVNAPE K L A NI P VPKRASYIRVIMLEL N RIA N HLLWLGPF L AD V GAQTPFFYIFRERE M IYDL W EAATG Q R LI n N NYFR 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 160 IGG I AADLP H GW ID KCLDFCDYF LREVA EY Q KLIT R NPIF LE R V EG V G IV S E EEAINWGLSGPMLRASG LQ WDLRKVDHY 239
Cdd:PRK07415 161 IGG V AADLP Y GW LE KCLDFCDYF GPKID EY E KLIT N NPIF RR R I EG L G TI S R EEAINWGLSGPMLRASG VK WDLRKVDHY 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 240 ECYD E FDW E V Q W QK EGD S LARY L VRI S EM T ES I KII Q QA LE GIPGGPYENLE TR R F AE VRNP EWN D FDY RFIS KK PS PTF 319
Cdd:PRK07415 241 ECYD D FDW D V A W ET EGD C LARY R VRI E EM R ES V KII R QA CK GIPGGPYENLE AK R M AE GKKS EWN G FDY QYVA KK VA PTF 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2453164054 320 ELSKQ ELYVR V E AP KGELGIF MI G DQN V F PWRWKIR PPG F V NLQILP Q L V K RM K L ADIM T ILGSID I IMG E VDR 393
Cdd:PRK07415 321 KIPNG ELYVR L E SG KGELGIF IQ G NND V T PWRWKIR AAD F N NLQILP H L L K GA K V ADIM A ILGSID V IMG S VDR 394
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 592.43
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 7 RKDL M IV NMGP H HPS M HGVLRL I L T LDGE D V I D CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V N A P 86
Cdd:COG0649 3 ETEE M VL NMGP Q HPS T HGVLRL V L E LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V L A V 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 87 E Q L GN I Q VP K RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HNYFRIGG IAA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HNYFRIGG VRR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 167 LP H G WID K CLD F C DYF LREVA EY QK L I T R N P IF LE R VE GVG IV S E E E AI NW G LS GP M LRASG LQW DLRK VDH Y EC YDE F D 246
Cdd:COG0649 163 LP D G FLE K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK GVG VL S A E D AI AL G VT GP V LRASG VDY DLRK DEP Y SG YDE L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 247 WE V QWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L EGI P G GP Y e NLETRRF A EVRNP E WNDFDYRF I S -- K KPSPT F ELSKQ 324
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP V - MAKDPKI A PPPKE E MKTSMEAL I H hf K LVTEG F KVPAG 321
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2453164054 325 E L Y VR VE A P K GELG IFMIG D QNVF P W R W KIR P P G F V NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 322 E V Y AA VE S P R GELG FYLVS D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
6-393
2.62e-176
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 496.22
E-value: 2.62e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 6 TRKDLMIV N M GP H HP SM HGVLRLIL T LDGE D V IDCE P IL GYLHRG M EK I AE N RT II Q YL PY VT R W DY LAT M FT E AITVN A 85
Cdd:PRK06075 2 AEIRNYTL N F GP Q HP AA HGVLRLIL E LDGE V V VRAD P HI GYLHRG T EK L AE Y RT YL Q AI PY FD R L DY VSP M NN E HAYCL A 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 86 P E Q L GN I Q VP K RA S YIRV IM LEL S RI A SHLLWLG PFMA D I GA Q T P F FYI FRERE LIY DL F EA A TG M RM M H N Y F R I GG IAA 165
Cdd:PRK06075 82 V E K L LG I E VP E RA Q YIRV LF LEL N RI L SHLLWLG THAL D L GA M T V F LWG FRERE KLL DL Y EA V TG A RM H H A Y I R P GG VRR 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 166 DLP H G WIDKCL DF C DYF LREVAE Y QK L I T R N P I FLE R VE GVG I VS E E E A INW G LS GPMLRASG LQ WDLRK VDH YE C YDE F 245
Cdd:PRK06075 162 DLP D G LLEDIR DF L DYF PKRLDD Y ET L L T D N R I WKQ R LV GVG V VS K E R A LAL G FT GPMLRASG VA WDLRK SQP YE V YDE L 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 246 D WE V QWQ K E GD SLA RYLVR IS EM TE S IK II Q Q A L E -- GI P G GP YEN l ETRRF A EVRNP E WNDFDYRF I S -- K KPSPT F EL 321
Cdd:PRK06075 242 D FD V PVG K N GD CYD RYLVR VE EM RQ S LR II E Q C L D rl RP P P GP VMV - DDPKI A PPARL E MKTSMEAL I H hf K LVTEG F RV 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2453164054 322 SKQ E L Y VR VE A PKGE L G IFMIG D QNVF P W R W KIR P P G F VN LQ I L PQLVKRMK LAD IMT I L GS I DI IM GEVDR 393
Cdd:PRK06075 321 PAG E V Y AA VE S PKGE F G VYLVS D GGNK P Y R V KIR A P S F AH LQ A L DEMCRGHM LAD VVA I I GS L DI VF GEVDR 392
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
6-393
8.22e-163
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 461.10
E-value: 8.22e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 6 T R KDL M IV N M GP H HPS M HGV L RL I L TL DGE DVIDCE P IL GYLHRG M EK I AE NRTII Q YL PY VT R W DYL AT M FTEAITVN A 85
Cdd:PRK12322 2 L R TEE M LL N V GP Q HPS T HGV F RL V L KI DGE IIVEAT P VI GYLHRG T EK L AE SLQYT Q II PY TD R M DYL SA M TNNYVYCH A 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 86 P E QLGNIQ VP K RA S Y I RVI ML EL S RIASHL L W L G PFMA DIGA QT PF F Y I FRERE L I YD L FEAAT G M R MMH NY F RIGG IAA 165
Cdd:PRK12322 82 V E TMMGLE VP E RA E Y L RVI AM EL G RIASHL V W W G TYLL DIGA VS PF L Y A FRERE M I IN L LNELC G A R LTF NY M RIGG VKW 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 166 D L P H GWI D K CLD F CD Y FLREV A E Y QK L I T R N P IFL E RV E GVGI V S E EEAI NWG LSG PM LR AS G LQ WDLRK VDH Y EC YD E F 245
Cdd:PRK12322 162 D A P D GWI E K VKE F VP Y MREQL A G Y HD L V T G N E IFL N RV K GVGI Y S A EEAI SYS LSG VN LR CT G VN WDLRK DEP Y SI YD R F 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 246 D WEVQWQKE GD SLA RY LV R IS E MTE S I KII Q QA L E GI P - G GP yenletrrfaevrnpewndfdyrf ISK K PSPTFELS K Q 324
Cdd:PRK12322 242 D FDIPVGSV GD CWD RY VC R MQ E IEQ S L KII E QA V E QF P k E GP ------------------------ VLA K VPKIIKAP K G 297
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2453164054 325 E L YVR V E A P K GE L G IFMIG D QNVF P W R W K I R P P G F V NLQILP Q L V K RMKL A DIMT ILGSIDI IM GEVD R 393
Cdd:PRK12322 298 E A YVR I E S P R GE I G CYIAS D GKKK P Y R L K F R R P S F Y NLQILP K L L K GENI A NLIA ILGSIDI VL GEVD G 366
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
1.06e-159
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 454.11
E-value: 1.06e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 9 DL MI V N M GP H HPS M HGVLRLIL T LDGE D V IDCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVN A P E Q 88
Cdd:TIGR01962 1 EF MI L N L GP Q HPS T HGVLRLIL E LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCL A V E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 89 L GN I Q VP K RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHN YFRIGG I A A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSA YFRIGG V A L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 169 HG W IDKCLD F CDY F LREVAE Y QK L ITR N P I FLE R VE GVG I VS EEE A IN WGL S GPMLR A SG LQ WD L RK VDH YE C YDE F D WE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ GVG V VS AKD A LD WGL T GPMLR G SG ID WD I RK SEP YE G YDE Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 249 V QWQKE GD SLA RYL V R IS EM T ESIKII Q Q A LE GI P G GP Y enletrrfa EVR NP E wndfd YRFIS K KPSP T -------- F E 320
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I --------- KAD NP K ----- LAPPP K ERML T smealihh F K 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 321 L SKQ ------- E L YV RV E A PKGELG IFM I G D QNVF P W R W KIR P P G F VN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 307 L VTE gfrvpag E V YV PI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
1.55e-142
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 406.00
E-value: 1.55e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H N YFR I GG I A A DLP H G WID K CLD F C DYF LREVA EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H S YFR P GG V A R DLP E G FLE K IRE F L DYF PKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 205 GVG IV S E E E A INW G LS GPMLRASG LQ WDLRK VDH Y EC YDE F D WE V QWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 GVG VL S A E D A LAL G VT GPMLRASG VP WDLRK DEP Y SG YDE L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 285 GP YEN l ETRRF A EVRNP E ---- WNDFDYR F is K KPSPT F ELSKQ E L YV R VEAPKGELG IFMIG D QNVF P W R W KIR P P G F V 360
Cdd:pfam00346 161 GP VMA - DDPKI A LPPKE E mkts MEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG FYLVS D GGTK P Y R V KIR A P S F A 237
250 260 270
....*....|....*....|....*....|...
gi 2453164054 361 NLQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 238 NLQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
8-393
3.21e-134
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 402.62
E-value: 3.21e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 8 KDLM I V N M GP H HP SM HG VL R LI L T LDGE DVI D CEPIL GY L HRG M EKI A E NRTII Q YL PY VT R W DYLA TMFTEAIT VN AP E 87
Cdd:PRK13292 402 EETL I L N L GP Q HP GT HG II R FV L K LDGE EIV D MDSDI GY H HRG A EKI G E RQHWN Q FI PY TD R I DYLA GVQNNLAY VN SV E 481
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 88 Q L GN I Q VP K RA S YIRV IML EL S RIA S HL L WLG P F M AD I GA Q TP F FY I F RE RE L I Y D LF E AA TG M RM MHNY FRIGG I A A DL 167
Cdd:PRK13292 482 T L CG I E VP D RA I YIRV MLS EL F RIA N HL V WLG T F A AD V GA M TP V FY T F TD RE K I F D IV E MI TG G RM HPAW FRIGG V A E DL 561
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 168 P H GW IDKCLD F CDY F LREVA EY QK L I T R NPIF LE R VE GVG IVSEE EA IN WG L SGP M LRA S GL Q WDLRK VDH Y EC YD E FD W 247
Cdd:PRK13292 562 P E GW KEAVEA F LRW F PGRLK EY ED L L T G NPIF KA R LK GVG VITRD EA VE WG I SGP N LRA C GL A WDLRK KMP Y GG YD R FD F 641
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 248 EV QWQKE GD SL ARYLVR IS EM TE S IK I IQ QA LE G I PGG PYENLET R RFAEVRNPEWN D FD --- YR F ISKKPS P T fe LS K Q 324
Cdd:PRK13292 642 EV PTAEG GD CY ARYLVR ME EM RQ S LR I VR QA AA G M PGG RWISDDY R YVLPQKRDTLK D IE sli HH F VNVTRG P A -- PP K G 719
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2453164054 325 E L Y VRV EAPKGE L G I F MIG D QNVFPW R WK IR P P G F VNL Q I LP Q L VKRMKL AD IMT I L GSID IIMGEV DR 393
Cdd:PRK13292 720 E C Y AAI EAPKGE N G Y F VVS D GLNIAY R MR IR T P S F PHI Q A LP L L SRGWLV AD FLA I I GSID FVLADL DR 788
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
9-393
6.51e-122
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 364.63
E-value: 6.51e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 9 D L M IV N M GP H HPS M HG VL R LI L T LDGE DVI DC E P IL GY L HRG M EK IA E NRTIIQ Y L PY VT R W DYL ATMFT E AIT V N A P E Q 88
Cdd:PRK11742 190 D F M FL N L GP N HPS A HG AF R IV L Q LDGE EIV DC V P DI GY H HRG A EK MG E RQSWHS Y I PY TD R I DYL GGCMN E MPY V L A V E K 269
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 89 L GN I Q VP K R ASY IRV IML EL S RI A SHLL WL G P F MA D I GA Q TP F F YI F RE R EL IYD LF EA A TG M RM MHNY FRIGG I A A DLP 168
Cdd:PRK11742 270 L AG I T VP D R VNV IRV MLS EL F RI N SHLL YI G T F IQ D V GA M TP V F FA F TD R QK IYD VI EA I TG F RM HPAW FRIGG V A H DLP 349
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 169 H GW i D KC L - D F C D YFLREVA EY Q K LIT RN P I FLE R VE GV GIVSEE EA IN WG LS G PM LRA S G LQW D L RK VDH Y EC Y DE FD W 247
Cdd:PRK11742 350 R GW - D RL L r E F L D WMPKRLD EY E K AAL RN S I LKG R TQ GV AAYNAK EA LE WG VT G AG LRA T G IDF D V RK ARP Y SG Y EN FD F 428
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 248 EV QWQKE GD SLA R YL V RIS EM TE S IK II Q Q A L EGI P G GP Y ---------------- ENL ET -- RR F AE V rnp E W ndfdyr 309
Cdd:PRK11742 429 EV PVGGN GD CYD R VM V KVE EM RQ S LR II E Q C L DNM P E GP F kadhplttpppkertl QHI ET li TH F LQ V --- S W ------ 499
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 310 fiskkp S P T fe LSKQ E LYVRV EA P KG ELGIFMIG D QNVFPW R WK IR P P G F VN LQ IL P QLVKRMKLA D IMTI LGSID II M G 389
Cdd:PRK11742 500 ------ G P V -- MPAN E SFQMI EA T KG INSYYLTS D GSTMSY R TR IR T P S F AH LQ QI P SVIRGSLVS D LIVY LGSID FV M S 571
....
gi 2453164054 390 E VDR 393
Cdd:PRK11742 572 D VDR 575
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
8-385
1.17e-104
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 317.30
E-value: 1.17e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 8 KDLMIVNM GP H H PSMHGVLRLILTLD GE DVI D C E PI LGY L HRG M EK I AE N R TII Q Y L PYVT R ---------- WD Y latmf 77
Cdd:COG3261 120 EGVHEIPV GP V H AGLIEPGHFRFSVE GE RIL D L E IR LGY V HRG I EK L AE G R DYE Q A L YLAE R icgicsvaha LA Y ----- 194
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 78 TE A I tvnap E QLGN I Q VP K RA S Y I RVI M LEL S RI A SHLL W LG PFMA D I G AQ T P F FYIF R E RE LIY DL F EA A TG M R MMHNY 157
Cdd:COG3261 195 CQ A V ----- E KAAG I E VP P RA Q Y L RVI L LEL E RI H SHLL D LG ALAN D V G FE T L F MQCW R L RE RVL DL N EA L TG N R VLRGI 269
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 158 FRI GG IAA DL PHGWIDKC L DFC D YFLR EV A E YQK L ITRN P IF L E R VE G V G IV S E E E A INW G LS GP ML RASG LQW D L R KVD 237
Cdd:COG3261 270 NVP GG VRR DL DPEQLKAI L ERL D ELEE EV K E LVD L FLND P SV L D R LV G T G VL S K E D A RDL G AV GP VA RASG VDR D V R RDH 349
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2453164054 238 H Y EC YDE F D WE V QWQK EGD SL AR Y LVR IS E MT ES IKI I Q QALE GI P G GP yenletrrfae V R N P EWNDFDYRFI skkpsp 317
Cdd:COG3261 350 P Y AA YDE L D FK V VTET EGD VY AR A LVR LE E IF ES LDL I R QALE KL P E GP ----------- I R V P VPGLPPDGEG ------ 412
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2453164054 318 tfelskqel YV RVEAP K GEL GIFMIG D QNVFPW R W KIR P P G F V N LQI L PQLVKRMKL AD IMT I LG S I D 385
Cdd:COG3261 413 --------- LG RVEAP R GEL VHYVRT D GDGRLE R V KIR T P S F A N WPA L ELALRGNIV AD FPL I NK S F D 471
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
