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Conserved domains on  [gi|2447464914|dbj|BDX51351|]
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hypothetical protein N4E_28540 (plasmid) [Enterococcus faecalis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TcpE super family cl15008
TcpE family; This family of proteins includes TcpE a conjugative transposon membrane protein. ...
 1-53 1.67e-14

TcpE family; This family of proteins includes TcpE a conjugative transposon membrane protein.This family of proteins is found in bacteria. Proteins in this family are typically between 122 and 168 amino acids in length.


The actual alignment was detected with superfamily member pfam12648:

Pssm-ID: 432696  Cd Length: 106  Bit Score: 62.33  E-value: 1.67e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2447464914   1 MIEGAF--LKYFGIPVAFTWFMSTKTFDGKKPYGFLKSVIAYALRPKLTYAGKKV 53
Cdd:pfam12648  52 MINGVLnlLLYIGIPVVLTWFASEKKPDGKKMLIFLKDVLRYLFRPKLTNKGKYV 106
 
Name Accession Description Interval E-value
TcpE pfam12648
TcpE family; This family of proteins includes TcpE a conjugative transposon membrane protein. ...
 1-53 1.67e-14

TcpE family; This family of proteins includes TcpE a conjugative transposon membrane protein.This family of proteins is found in bacteria. Proteins in this family are typically between 122 and 168 amino acids in length.


Pssm-ID: 432696  Cd Length: 106  Bit Score: 62.33  E-value: 1.67e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2447464914   1 MIEGAF--LKYFGIPVAFTWFMSTKTFDGKKPYGFLKSVIAYALRPKLTYAGKKV 53
Cdd:pfam12648  52 MINGVLnlLLYIGIPVVLTWFASEKKPDGKKMLIFLKDVLRYLFRPKLTNKGKYV 106
 
Name Accession Description Interval E-value
TcpE pfam12648
TcpE family; This family of proteins includes TcpE a conjugative transposon membrane protein. ...
 1-53 1.67e-14

TcpE family; This family of proteins includes TcpE a conjugative transposon membrane protein.This family of proteins is found in bacteria. Proteins in this family are typically between 122 and 168 amino acids in length.


Pssm-ID: 432696  Cd Length: 106  Bit Score: 62.33  E-value: 1.67e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2447464914   1 MIEGAF--LKYFGIPVAFTWFMSTKTFDGKKPYGFLKSVIAYALRPKLTYAGKKV 53
Cdd:pfam12648  52 MINGVLnlLLYIGIPVVLTWFASEKKPDGKKMLIFLKDVLRYLFRPKLTNKGKYV 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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