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Conserved domains on  [gi|2201815842|dbj|BDB06834|]
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NADH dehydrogenase subunit 2, partial [Oryzias profundicola]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-294 2.95e-162

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 455.80  E-value: 2.95e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   1 LAWMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLPLSLLTIALFLKIG 80
Cdd:MTH00135   28 LAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIG 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  81 LAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVIPDMPALLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHLG 160
Cdd:MTH00135  108 LAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLG 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 161 WMIIVVQFSPNLTALTLLLYIIMTTSVFLLFKILKTTNMNKLAISWSKIPTVTALTPLILLSLGGLPPLSGFIPKWFIIQ 240
Cdd:MTH00135  188 WMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQ 267

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2201815842 241 ELTKQELGVIATLAALSALLSLFFYLRICFSLTLTSSPSNILGSMSWRLTNKQN 294
Cdd:MTH00135  268 ELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQL 321
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-294 2.95e-162

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 455.80  E-value: 2.95e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   1 LAWMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLPLSLLTIALFLKIG 80
Cdd:MTH00135   28 LAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIG 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  81 LAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVIPDMPALLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHLG 160
Cdd:MTH00135  108 LAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLG 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 161 WMIIVVQFSPNLTALTLLLYIIMTTSVFLLFKILKTTNMNKLAISWSKIPTVTALTPLILLSLGGLPPLSGFIPKWFIIQ 240
Cdd:MTH00135  188 WMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQ 267

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2201815842 241 ELTKQELGVIATLAALSALLSLFFYLRICFSLTLTSSPSNILGSMSWRLTNKQN 294
Cdd:MTH00135  268 ELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQL 321
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-240 5.37e-17

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 79.66  E-value: 5.37e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   1 LAWMGLEMNTLAILPLMA-QHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTG-----------QWGIHHITHPLPL 68
Cdd:pfam00361   6 LMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSGLLLLF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  69 SLLTIALFLKIGLAPVHAWMPEVLQGLDLTTGLIM-STWQKLAPFALIVQVIPDMPA------LLIGLGILSMLVGGWGG 141
Cdd:pfam00361  86 LLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLLGSLAA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 142 LNHTQLRKILAYSSIAHLGWMIIVV----QFSPNLTALTLLLYIIMTTSVFLLFKIL-----KTTNMNKLAISWSKIPTV 212
Cdd:pfam00361 166 LVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAKTMPIL 245

                         250       260
                  ....*....|....*....|....*...
gi 2201815842 213 TALTPLILLSLGGLPPLSGFIPKWFIIQ 240
Cdd:pfam00361 246 ALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-268 4.38e-16

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 78.62  E-value: 4.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   4 MGLEMNTLAILPLMA-QHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLP------------LSL 70
Cdd:COG1007   129 LGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAALAagganspllllgLVL 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  71 LTIALFLKIGLAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVI--------PDMPALLIGLGILSMLVGGWGGL 142
Cdd:COG1007   209 VLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLveafpglaADWQLLLAVLAVLSMTVGNLAAL 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 143 NHTQLRKILAYSSIAHLGWMIIVV----QFSPNLTALTLLLYIIMTTSVFLLFKILK-----TTNMNKLA-ISWSKIPTV 212
Cdd:COG1007   289 AQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVILLLSrkggeAEEIEDLAgLARRSPLLA 368

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2201815842 213 TALT---------PlillslgglpPLSGFIPKWFIIQELTKQELGVIATLAALSALLSLFFYLRI 268
Cdd:COG1007   369 LAMTifllslagiP----------PTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 5-268 1.63e-13

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 70.75  E-value: 1.63e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   5 GLEMNTLAILPLMA-QHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLP------------LSLL 71
Cdd:TIGR01770 130 GLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSngmlnisllllgIVLI 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  72 TIALFLKIGLAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVI--------PDMPALLIGLGILSMLVGGWGGLN 143
Cdd:TIGR01770 210 LVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyilfgfsEAWQIFLAIIAFLSMLIGNFGALA 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 144 HTQLRKILAYSSIAHLGWMIIVVqFSPNLTA-----LTLLLYIIMTTSVFLLFKILKTTN------MNKLAISWSKIPTV 212
Cdd:TIGR01770 290 QKKVKRLLAYSSISHVGYILIGL-LAGTLEGikavlFYIFIYALMSLGAFGVLSLLRSYKdewieyISDFAGLFKTNPIL 368

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2201815842 213 TALTPLILLSLGGLPPLSGFIPKWFIIQELTKQELGVIATLAALSALLSLFFYLRI 268
Cdd:TIGR01770 369 AILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-294 2.95e-162

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 455.80  E-value: 2.95e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   1 LAWMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLPLSLLTIALFLKIG 80
Cdd:MTH00135   28 LAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIG 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  81 LAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVIPDMPALLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHLG 160
Cdd:MTH00135  108 LAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLG 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 161 WMIIVVQFSPNLTALTLLLYIIMTTSVFLLFKILKTTNMNKLAISWSKIPTVTALTPLILLSLGGLPPLSGFIPKWFIIQ 240
Cdd:MTH00135  188 WMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQ 267

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2201815842 241 ELTKQELGVIATLAALSALLSLFFYLRICFSLTLTSSPSNILGSMSWRLTNKQN 294
Cdd:MTH00135  268 ELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQL 321
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-294 2.63e-120

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 349.60  E-value: 2.63e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   1 LAWMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLPLSLLTIALFLKIG 80
Cdd:MTH00070   28 LAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLG 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  81 LAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVIPDM-PALLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHL 159
Cdd:MTH00070  108 IAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLnSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHL 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 160 GWMIIVVQFSPNLTALTLLLYIIMTTSVFLLFKILKTTNMNKLAISWSKIPTVTALTPLILLSLGGLPPLSGFIPKWFII 239
Cdd:MTH00070  188 GWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLIL 267

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2201815842 240 QELTKQELGVIATLAALSALLSLFFYLRICFSLTLTSSPSNILGSMSWRLTNKQN 294
Cdd:MTH00070  268 QELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTN 322
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-294 4.12e-107

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 315.99  E-value: 4.12e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   1 LAWMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLPLSLLTIALFLKIG 80
Cdd:MTH00112   28 MAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLG 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  81 LAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVIPDM-PALLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHL 159
Cdd:MTH00112  108 LAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLnPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHL 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 160 GWMIIVVQFSPNLTALTLLLYIIMTTSVFLLFKILKTTNMNKLAISWSKIPTVTALTPLILLSLGGLPPLSGFIPKWFII 239
Cdd:MTH00112  188 GWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLIL 267

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2201815842 240 QELTKQELGVIATLAALSALLSLFFYLRICFSLTLTSSPSNILGSMSWRLTNKQN 294
Cdd:MTH00112  268 QELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKN 322
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-291 1.76e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 284.05  E-value: 1.76e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   1 LAWMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLPLSLLTIALFLKIG 80
Cdd:MTH00105   28 LAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLG 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  81 LAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVIPDM-PALLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHL 159
Cdd:MTH00105  108 LAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSInPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHM 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 160 GWMIIVVQFSPNLTALTLLLYIIMTTSVFLLFKILKTTNMNKLAISWSKIPTVTALTPLILLSLGGLPPLSGFIPKWFII 239
Cdd:MTH00105  188 GWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMII 267

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2201815842 240 QELTKQELGVIATLAALSALLSLFFYLRICFSLTLTSSPSNILGSMSWRLTN 291
Cdd:MTH00105  268 QELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFEN 319
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-294 2.36e-88

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 268.38  E-value: 2.36e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   1 LAWMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLPLSLLTIALFLKIG 80
Cdd:MTH00200   28 LIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLG 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  81 LAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVIPDM-PALLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHL 159
Cdd:MTH00200  108 LAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALnSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHL 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 160 GWMIIVVQFSPNLTALTLLLYIIMTTSVFLLFKILKTTNMNKLAISWSKIPTVTALTPLILLSLGGLPPLSGFIPKWFII 239
Cdd:MTH00200  188 GWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLIL 267

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2201815842 240 QELTKQELGVIATLAALSALLSLFFYLRICFSLTLTSSPSNILGSMSWRLTNKQN 294
Cdd:MTH00200  268 QELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSN 322
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-294 2.17e-75

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 235.21  E-value: 2.17e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   3 WMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLPLSLLTIALFLKIGLA 82
Cdd:MTH00041   30 WLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLA 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  83 PVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVIPDMPA-LLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHLGW 161
Cdd:MTH00041  110 PCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSnILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGW 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 162 MIIVVQFSPNLTALTLLLYIIMTTSVFLLFKILKTTNMNKLAISWSKIPTVTALTPLILLSLGGLPPLSGFIPKWFIIQE 241
Cdd:MTH00041  190 IIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLYC 269

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2201815842 242 LTKQELGVIATLAALSALLSLFFYLRICFSLTLTSSPSNILGSMSWRLTNKQN 294
Cdd:MTH00041  270 LIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNIT 322
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-280 1.59e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 157.29  E-value: 1.59e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   2 AWMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGqwgihhITHPLPLSLLTIALFLKIGL 81
Cdd:MTH00160   30 AWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM------LFNNISSMLINSSLLLKLGA 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  82 APVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVIPDMpaLLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHLGW 161
Cdd:MTH00160  104 APFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN--FIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGW 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 162 MIIVVQFSPNLTALTLLLYIIMTTSVFLLFKILKTTNMNKLAISWSKIPTVTALTPLILLSLGGLPPLSGFIPKWFIIQE 241
Cdd:MTH00160  182 MLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQL 261

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2201815842 242 LTKQELGVIATLAALSALLSLFFYLRICFSLTLTSSPSN 280
Cdd:MTH00160  262 LISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKN 300
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 3-277 5.47e-37

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 134.91  E-value: 5.47e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   3 WMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAATILFAsstnawMTGQWGIHHITHPLPLSLLTIALFLKIGLA 82
Cdd:MTH00011   32 WMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG------MTMMWSFPSLLKNITALMLLVSLMLKLGMA 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  83 PVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVIPDMP-ALLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHLGW 161
Cdd:MTH00011  106 PCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNIlPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGW 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 162 MIIVVQFSPNLTALTLLLYIIMTTSVFLLFKILKTTNMNKLAISWSKIPTVTALTPLILLSLGGLPPLSGFIPKWFIIQE 241
Cdd:MTH00011  186 MTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIET 265

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2201815842 242 LTKQELGVIATLAALSALLSLFFYLRICFSLTLTSS 277
Cdd:MTH00011  266 LTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSP 301
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 3-287 3.96e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 132.70  E-value: 3.96e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   3 WMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIhhithplpLSLLTIALFLKIGLA 82
Cdd:MTH00144   30 WVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS--------MSLLLLGLCLKLGLF 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  83 PVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVI--PDMPALLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHLG 160
Cdd:MTH00144  102 PFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlYWLAYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTG 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 161 WMIIVVQFSPNLTALTLLLYIIMTTSVFLLFkILKTTNMNKLAISWSKIPTVTALTPLILLSLGGLPPLSGFIPKWFIIQ 240
Cdd:MTH00144  182 WMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLI 260

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2201815842 241 ELTKQELGVIATLAALSALLSLFFYLRICFSLTLTSSPSNILGSMSW 287
Cdd:MTH00144  261 SSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-271 4.06e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 113.61  E-value: 4.06e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   1 LAWMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHIthplplsLLTIALFLKIG 80
Cdd:MTH00197   22 LVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLSVV-------LVILGLLLKLG 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  81 LAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFaLIVQVIPDMPALLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHLG 160
Cdd:MTH00197   95 AFPFHFWVPSVMESLSWFNCFLLATWQKLAPL-LILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTG 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 161 WMIIVVQFSPNLTALTLLLYIIMTtsvFLLFKILKTTNMNKLAISWSKIPTVTALTPLILLSLGGLP---PLSGFIPKWF 237
Cdd:MTH00197  174 WMLMSLVYSPSIFMLYYLIYFVIM---FMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGglpPLSGFFLKWL 250

                         250       260       270
                  ....*....|....*....|....*....|....
gi 2201815842 238 IIQELTKQELGVIATLAALSALLSLFFYLRICFS 271
Cdd:MTH00197  251 ILTSLLSSNISLITFMLILSTCFSLYYYLSLAYK 284
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 3-196 6.29e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 88.93  E-value: 6.29e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   3 WMGLEMNTLAILPLMAQHHHP-RAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHI-------------THPLPL 68
Cdd:MTH00196   19 YLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYInlvlnsgqsfssvSVPIGY 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  69 SLLTIALFLKIGLAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVIPDMPALLIGlGILSMLVGGWGGLNHTQLR 148
Cdd:MTH00196   99 LLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIG-GLFSLFVGAIGALNQTKIK 177

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2201815842 149 KILAYSSIAHLGWMIIVVQF----SPNLTALTLLLYIIMTTSVFLLFKILKT 196
Cdd:MTH00196  178 RLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFSIILALNV 229
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 3-197 1.48e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 82.76  E-value: 1.48e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   3 WMGLEMNTLAILPLMA-QHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLPLS----LLTIALFL 77
Cdd:MTH00199  123 YLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSILTGDvgkiLITISLLF 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  78 KIGLAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVIPDMPALLIgLGILSMLVGGWGGLNHTQLRKILAYSSIA 157
Cdd:MTH00199  203 KLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLI-CAVLSIIYGAIGALNQTKIKRLLAYSGIG 281

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2201815842 158 HLGWMIIVVQF----SPNLTALTLLLYIIMTTSVFLLFKILKTT 197
Cdd:MTH00199  282 HMGFILFGVAIgsfeSIQASLIYMIIYVIMSICSFSIILSLKLT 325
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-240 5.37e-17

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 79.66  E-value: 5.37e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   1 LAWMGLEMNTLAILPLMA-QHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTG-----------QWGIHHITHPLPL 68
Cdd:pfam00361   6 LMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSGLLLLF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  69 SLLTIALFLKIGLAPVHAWMPEVLQGLDLTTGLIM-STWQKLAPFALIVQVIPDMPA------LLIGLGILSMLVGGWGG 141
Cdd:pfam00361  86 LLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLLGSLAA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 142 LNHTQLRKILAYSSIAHLGWMIIVV----QFSPNLTALTLLLYIIMTTSVFLLFKIL-----KTTNMNKLAISWSKIPTV 212
Cdd:pfam00361 166 LVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAKTMPIL 245

                         250       260
                  ....*....|....*....|....*...
gi 2201815842 213 TALTPLILLSLGGLPPLSGFIPKWFIIQ 240
Cdd:pfam00361 246 ALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
4-268 1.92e-16

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 79.48  E-value: 1.92e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   4 MGLEMNTLAILPLMAQH-HHPRAVEATTKYFLIQSAAAATILF--------ASSTN----AWMTGQWGIHHITHPLPLSL 70
Cdd:PRK05777  130 LGLELLSLPLYALAALRrDRRRSLEAAIKYFVLGALASGFLLYgmsllygaTGSLSfagiAKALADGSGNSLLLLFGLVF 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  71 LTIALFLKIGLAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVI--------PDMPALLIGLGILSMLVGGWGGL 142
Cdd:PRK05777  210 LLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLvvafgglsEDWQQVLAIIAIASMLVGNLAAL 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 143 NHTQLRKILAYSSIAHLGWMIIVV----QFSPNLTALTLLLYIIMTTSVFLLFKILK-----TTNMNKLA-ISWSKiPTV 212
Cdd:PRK05777  290 SQTNIKRLLAYSSIAHAGYLLVGLaagtAEGYSAVLFYLLAYLFMTLGAFGVISLLRrkggeAESISDFAgLSKRS-PLL 368

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2201815842 213 TALTPLILLSLGGLPPLSGFIPKWFIIQELTKQELGVIATLAALSALLSLFFYLRI 268
Cdd:PRK05777  369 AAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-268 4.38e-16

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 78.62  E-value: 4.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   4 MGLEMNTLAILPLMA-QHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLP------------LSL 70
Cdd:COG1007   129 LGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAALAagganspllllgLVL 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  71 LTIALFLKIGLAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVI--------PDMPALLIGLGILSMLVGGWGGL 142
Cdd:COG1007   209 VLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLveafpglaADWQLLLAVLAVLSMTVGNLAAL 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 143 NHTQLRKILAYSSIAHLGWMIIVV----QFSPNLTALTLLLYIIMTTSVFLLFKILK-----TTNMNKLA-ISWSKIPTV 212
Cdd:COG1007   289 AQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVILLLSrkggeAEEIEDLAgLARRSPLLA 368

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2201815842 213 TALT---------PlillslgglpPLSGFIPKWFIIQELTKQELGVIATLAALSALLSLFFYLRI 268
Cdd:COG1007   369 LAMTifllslagiP----------PTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 5-268 1.63e-13

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 70.75  E-value: 1.63e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   5 GLEMNTLAILPLMA-QHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLP------------LSLL 71
Cdd:TIGR01770 130 GLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSngmlnisllllgIVLI 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  72 TIALFLKIGLAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVI--------PDMPALLIGLGILSMLVGGWGGLN 143
Cdd:TIGR01770 210 LVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyilfgfsEAWQIFLAIIAFLSMLIGNFGALA 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 144 HTQLRKILAYSSIAHLGWMIIVVqFSPNLTA-----LTLLLYIIMTTSVFLLFKILKTTN------MNKLAISWSKIPTV 212
Cdd:TIGR01770 290 QKKVKRLLAYSSISHVGYILIGL-LAGTLEGikavlFYIFIYALMSLGAFGVLSLLRSYKdewieyISDFAGLFKTNPIL 368

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2201815842 213 TALTPLILLSLGGLPPLSGFIPKWFIIQELTKQELGVIATLAALSALLSLFFYLRI 268
Cdd:TIGR01770 369 AILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 3-251 5.34e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 69.02  E-value: 5.34e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   3 WMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLP----------LSLLT 72
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAeldpglllaaFALLL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  73 IALFLKIGLAPVHAWMPE-----------VLQGLDLTTGL--IMSTWQKLAPfaliVQVIPDMPALLIGLGILSMLVGGW 139
Cdd:COG0651   213 VGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFG----ADPALFLGTLLLVLGLLTMLVGAL 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 140 GGLNHTQLRKILAYSSIAHLGWMIIVVQFSPNLTALTLLLYII----MTTSVFL----LFKILKTTNMNKLAISWSKIPT 211
Cdd:COG0651   289 GALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLaagaIERATGTRDLDKLGGLGKRMPL 368

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 2201815842 212 VTALTPLILLSLGGLPPLSGFIPKWFIIQELTKQELGVIA 251
Cdd:COG0651   369 TAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLA 408
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-166 1.81e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 64.88  E-value: 1.81e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   3 WMGLEMNTLAILPLMAQHHHPRAV---------EATTKYFLIQSAAAATILFASSTNAWMTGQWG--------------I 59
Cdd:MTH00198  214 YLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNEGmlgtilsatlettnI 293

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  60 HHITHPLPLSLLTIALFLKIGLAPVHAWMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVIPdMPALLIGLGILSMLVGGW 139
Cdd:MTH00198  294 ELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVI-TSKLLLSVAIISLVVGAF 372

                         170       180
                  ....*....|....*....|....*..
gi 2201815842 140 GGLNHTQLRKILAYSSIAHLGWMIIVV 166
Cdd:MTH00198  373 GALNQTRIKRLLAYSGIGHIGFILIGV 399
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
23-164 4.40e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 60.45  E-value: 4.40e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  23 PRAVEATTKYFLIQSAAAATILFASS---------TNAWMTGQWGIHHITHPLPLSLL----TIALflKIGLAPVHAWMP 89
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYGSSllyglsggsTQLSAIALALITSPSLGLALALVfviaGIAF--KISAVPFHQWTP 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  90 EVLQGLDLTTGLIMSTWQKLAPFAL----IVQVIPDMP----ALLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHLGW 161
Cdd:PRK02504  235 DVYEGSPTPVVAFLSVGSKAAGFALairlLVTAFPSFDeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGF 314


                  ...
gi 2201815842 162 MII 164
Cdd:PRK02504  315 VMI 317
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-176 4.58e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 54.11  E-value: 4.58e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   6 LEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHITHPLP--------LSLLTIALFL 77
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAenptvvtaFGFVLLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  78 KIGLAPVHAWMPEVLQGL-DLTTGLIMSTWQKLAPFALI--------VQVIPDMPA--LLIGLGILSMLVGGWGGLNHTQ 146
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAApPVVTALLSGLVTKVAVYALIriyftvfgGDFRFALGLgwLLAVLALLSMLVGSLAALGQDD 294

                         170       180       190
                  ....*....|....*....|....*....|
gi 2201815842 147 LRKILAYSSIAHLGWMIIVVQFSpNLTALT 176
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALL-TPLALA 323
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 62-216 3.78e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.48  E-value: 3.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  62 ITHPLPLS---LLTIALFL----KIGLAPVHAWMPEV-LQGLDLTTGLIMSTWQKLAPFALIVQVIPDMPA-------LL 126
Cdd:TIGR01972 193 LNLPLPFGvqtWLFLAFFIafavKVPLFPLHTWLPDAhVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDaslyfapVL 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 127 IGLGILSMLVGGWGGLNHTQLRKILAYSSIAHLGWMIIVVqFSPNLTALT-----LLLYIIMTTSVFLLFKIL----KTT 197
Cdd:TIGR01972 273 AALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGI-FSFNELGISgavfqMISHGLITAALFLLVGVLyeraHTR 351

                         170
                  ....*....|....*....
gi 2201815842 198 NMNKLAISWSKIPTVTALT 216
Cdd:TIGR01972 352 DIAKYGGLANKMPVLAAFF 370
ndhB CHL00049
NADH dehydrogenase subunit 2
 24-164 6.04e-07

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 50.77  E-value: 6.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  24 RAVEATTKYFLIQSAAAATILFASStnaWMTGQWG----IHHITHPL-------------PLSLLTIALFLKIGLAPVHA 86
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGFS---WLYGLSGgeieLQEIVNGLintqmynspgisiALIFITVGIGFKLSLAPFHQ 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  87 WMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVI--------PDMPALLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAH 158
Cdd:CHL00049  236 WTPDVYEGSPTPVVAFLSVTSKVAASALATRIFdipfyfssNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQ 315


                  ....*.
gi 2201815842 159 LGWMII 164
Cdd:CHL00049  316 IGYVII 321
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 1-168 1.17e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 49.93  E-value: 1.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   1 LAWMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAAAA-----TILFASSTNAWMTG-----QW-GIHHITHPLPLS 69
Cdd:PRK06458  132 LMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAfalfgTILVYANAATVMGDgemaiLWtELLKHASLLDPT 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  70 LLTIA-LFL------KIGLAPVHAWMPE-----------VLQGLDLTTGLimstWQKLAPFALIVQVIPDMPA--LLIGL 129
Cdd:PRK06458  212 LMKLAfVFLligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVAL----YAVLRYYILIDAAIGSDFPgrLLLIF 287

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2201815842 130 GILSMLVGGWGGLNHTQLRKILAYSSIAHLGwmIIVVQF 168
Cdd:PRK06458  288 GLLSVLVAAFFLLRQRDIKRLFAYSSIEHMG--LIAFAL 324
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 22-216 1.85e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 46.23  E-value: 1.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  22 HPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWG---IHHITHPLPLS-------LLTIALFLKIGLAPVHAWMPEV 91
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTfdiAELAAAPLPLTaqlllflAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  92 LQ-----GLDLTTGLIMstwqKLAPFALIVQVIPDMPA-------LLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHL 159
Cdd:COG1008   236 HVeaptaGSVLLAGVLL----KMGGYGLLRFALPLFPEasayfapLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHM 311

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2201815842 160 GWMIIVVqFSPNLTALT--LLLYI---IMTTSVFLLFKIL----KTTNMNKLAISWSKIPTVTALT 216
Cdd:COG1008   312 GFVLLGI-FALNPLGLQgaVLQMVshgLITAALFLLVGVLydrtHTRDIADLGGLAKRMPVLAALF 376
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 263-294 2.81e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 41.09  E-value: 2.81e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2201815842 263 FFYLRICFSLTLTSSPSNILGSMSWRLTNKQN 294
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKN 32
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-166 3.76e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 45.09  E-value: 3.76e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   6 LEMNTLAILPLMAQHHH-PRAVEATTKYFLIQSAAAATILFASstnAWMTGQWGI-------------HHITHPLPLSLL 71
Cdd:PRK08376  150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylavkmsenPTVVAKIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  72 TIALFLKIGLAPVHAWMPEVLQGL--DLTTGLIMSTWQKLAPFALIVQVI-------PDMPALLIGLGILSMLVGGWGGL 142
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAApsSISAMLLVIKQAGLYALARVLFSIygpainlATVGWVIIILGCLTMFVGVAMAV 306

                         170       180
                  ....*....|....*....|....
gi 2201815842 143 NHTQLRKILAYSSIAHLGWMIIVV 166
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMLLGL 330
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 125-166 8.31e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 44.14  E-value: 8.31e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2201815842 125 LLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHLGWMIIVV 166
Cdd:PRK12644  269 TVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 28-164 2.62e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 42.33  E-value: 2.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  28 ATTKYFLIQSAAAATILFASSTNAWMTGQWG-----IHHITHPLPLSLLTIALFL-----KIGLAPVHAWMPE------- 90
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTFTfdlaeLGAKSYPLALELLLYAGFLiafgvKLPIFPLHTWLPDahgeasa 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  91 ----VLQGLDLttglimstwqKLAPFALI---VQVIPDM-----PALLIgLGILSMLVGGWGGLNHTQLRKILAYSSIAH 158
Cdd:PRK12561  218 pvsmILAGVLL----------KMGGYALIrfnVQMLPDAhvyfaPALAI-LGVVNIIYGALNAFAQDNVKRRLAYSSVSH 286


                  ....*.
gi 2201815842 159 LGWMII 164
Cdd:PRK12561  287 MGFVLL 292
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-182 3.83e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 42.05  E-value: 3.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842   1 LAWMGLEMNTLAILPLMAQHHHPRAVEATTKYFLIQSAA------AATILFASSTNAWMTGQWGIHHITHPLPL------ 68
Cdd:PRK08676  126 LFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAAHASLlspsvl 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  69 ----SLLTIALFLKIGLAPVHAWMPEV-LQGLDLTTGLIMSTWQKLAPFALI--------VQVIPDMPALLIGLGILSML 135
Cdd:PRK08676  206 gasfLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILrlsallrqSGAAEQFSNVLIGLGIFSIA 285

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2201815842 136 VGGWGGLNHTQLRKILAYSSIAHLGWMIIVVQFSPNLTALTLLLYII 182
Cdd:PRK08676  286 VAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 125-219 5.32e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 41.68  E-value: 5.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 125 LLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHLGWMIIVVQFSpnltALTLLLYIIMTTSVF--LLF-------KILK 195
Cdd:COG1009   277 VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG----AYVAALFHLLTHAFFkaLLFlgagsviHATG 352

                          90       100
                  ....*....|....*....|....
gi 2201815842 196 TTNMNKLAISWSKIPtVTALTPLI 219
Cdd:COG1009   353 TRDIRKMGGLRKKMP-ITAITFLI 375
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 23-164 1.82e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 39.80  E-value: 1.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  23 PRAVEATTKYFLIQSAAAATILFA----SSTNAWMTGQWGIHHI-THPLPLS---LLTIALFL----KIGLAPVHAWMPE 90
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlNLPLPPGvqyWLFLAFFIafavKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  91 V-LQGLDLTTGLIMSTWQKLAPFALIVQVIPDMPA-------LLIGLGILSMLVGGWGGLNHTQLRKILAYSSIAHLGWM 162
Cdd:PRK05846  237 AhVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDashefapIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFV 316


                  ..
gi 2201815842 163 II 164
Cdd:PRK05846  317 TL 318
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 68-272 4.18e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 38.80  E-value: 4.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  68 LSLLTIALFLKIGLAPVHAWMPEV-----------LQGLDLTTG---------LIMSTWQKLAPFALIVQVIpdmpalLI 127
Cdd:PRK12667  226 LALALWAFTIKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALSPI------LI 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 128 GLGILSMLVGGWGGLNHTQLRKILAYSSIAHLGWMIIVVQFSPNLTALTLLLYII----------MTTSVFLlfKILKTT 197
Cdd:PRK12667  300 ILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVFI--HAAGTR 377

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2201815842 198 NMNKLAISWSKIPTVTALTPLILLSLGGLPPLSGFIPKWFIIQELTKQELGVIATLAALSALLSLFFYLRICFSL 272
Cdd:PRK12667  378 DIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSL 452
PRK12650 PRK12650
DUF4040 family protein;
70-216 4.34e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 38.87  E-value: 4.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  70 LLTIALFLKIGLAPVHAWMPEVLQGLD-LTTGLIMSTWQK-----LAPFALIVQVIPDMPALLIGLGILSMLVGGWGGLN 143
Cdd:PRK12650  213 LIAVAAFTKSAQFPFHFWLPEAMAAITpVSAFLHAAAVVKagiylLLRFSPVFHDVAVWNWLLIIVGMITALMGAVFAVQ 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842 144 HTQLRKILAYSSIAHLGWMI--IVVQFSPNLTALTL--LLYIIMTTSVFLLFKILK----TTNMNKLAISWSKIP-TVTA 214
Cdd:PRK12650  293 KTDLKKLTAYSTVSQLGWIVatIGVGTPFALTAAVVhtLAHALFKSSLFMLIGVVDhqagTRDIRRLGSLWRRMPfTFVS 372


                  ..
gi 2201815842 215 LT 216
Cdd:PRK12650  373 VT 374
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 73-202 4.54e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.75  E-value: 4.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  73 IALFLKIGLAPVHAWMPEV-----LQGLDLTTGLIMstwqKLAPFALIVQVIPDMP-------ALLIGLGILSMLVGGWG 140
Cdd:MTH00226  238 LAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLVRLSWPILPlgaqnlaPAVIAMGIVGIVYGSFA 313

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2201815842 141 GLNHTQLRKILAYSSIAHLGWMIIVVqFSPNLTALTLLLYI-----IMTTSVFLLFKILKTTNMNKL 202
Cdd:MTH00226  314 TCRQIDVKRLVAYSSVAHMGLVSITL-VTHDIIGLTGSIFImlahgIVSSLLFILVTILYDRHHTRL 379
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 21-169 5.77e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 38.27  E-value: 5.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  21 HHPRAVEATTKYFLIQSAAAATILFASSTNAWMTGQWGIHHIT---------HPLPLSLLTIALFL-----KIGLAPVHA 86
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILqdselieniKGHPLFLITLILIFigaaaKSAQGPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  87 WMPEVLQGLDLTTGLIMSTWQKLAPFALIVQVIP---DMPALLI---GLGILSMLVGGWGGLNHTQLRKILAYSSIAHLG 160
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPifsGTEAWFIlvsGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315


                  ....*....
gi 2201815842 161 WMIIVVQFS 169
Cdd:PRK12649  316 YLMTMYGYT 324
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
62-175 9.87e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 37.38  E-value: 9.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2201815842  62 ITHPLPLSLLTIALFLKIGLAPVHAWMPEV-LQGLDLTTGLIMSTWQKLAPFALI---VQVIPDM-----PALLIgLGIL 132
Cdd:PRK07363  202 NTQLILLTGLLLGFGIKIPLVPLHTWLPDAyTEASPAVAILLGGVLAKLGTYGLLrfgLQLFPQTwslvaPGLAI-IGTI 280

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2201815842 133 SMLVGGWGGLNHTQLRKILAYSSIAHLGWMIIVVQFSPNLTAL 175
Cdd:PRK07363  281 SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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