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Conserved domains on  [gi|345135304|dbj|BAK64913|]
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TPR repeat protein [Sphingobium sp. SYK-6]

Protein Classification

aspartyl/asparaginyl beta-hydroxylase domain-containing protein( domain architecture ID 10523946)

aspartyl/asparaginyl beta-hydroxylase domain-containing protein is an iron (II)/2-oxoglutarate-dependent oxygenase which catalyzes an oxidative reaction in one of a wide range of metabolic processes; belongs to the cupin superfamily

CATH:  2.60.120.10
Gene Ontology:  GO:0046872
PubMed:  14697267|19478949
SCOP:  3001825

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LpxO2 COG3555
Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily [Posttranslational modification, ...
 212-418 2.94e-77

Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 442776  Cd Length: 220  Bit Score: 239.01  E-value: 2.94e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304 212 YPFLPADEFFDREHFPWMAALEAQTNVIREELLGIIADPgDALRPYIRLDEGSpqskwTPLDRSLDWGACFLWEYGAPNA 291
Cdd:COG3555    3 FSGLPTTPFFDRAQFPWLAELEANWPTIRAELLALLAEI-EALPPYHDISFDQ-----ANIFFDRGWKRFYLYWYGERHP 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304 292 PVLERCPATAEALRAIPRAdipgrgPTAFFSLLRPRKRIPPHTGVTNTRTIVHLPLVVP--PGCAFRVGGETRPWRVGEA 369
Cdd:COG3555   77 SNCALCPKTAALLEQIPGV------KAAMFSILPPGKHIPPHRGPYNGRLRYHLGLIVPndDRCRIRVDGETYSWREGEA 150

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 345135304 370 FAFDDTIEHEAWNDSDALRAVLIFDVWNPHLSLEERdVIARYFRAADAS 418
Cdd:COG3555  151 VLFDDTYEHEAWNDTDETRVVLFCDVWRPMLSPWER-AVNRLFAAILMR 198
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 8-172 6.51e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 77.46  E-value: 6.51e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   8 QLLAQAMQAARRGDGAAQLafLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLM 87
Cdd:COG2956   80 LELAQDYLKAGLLDRAEEL--LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQ 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  88 GDDEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWHAVLQLAAGTAQIAPELrpvldqarAWIAREQARVG 167
Cdd:COG2956  158 GDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL--------AELYEKLGDPE 229


                 ....*
gi 345135304 168 EAVAA 172
Cdd:COG2956  230 EALEL 234
 
Name Accession Description Interval E-value
LpxO2 COG3555
Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily [Posttranslational modification, ...
 212-418 2.94e-77

Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442776  Cd Length: 220  Bit Score: 239.01  E-value: 2.94e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304 212 YPFLPADEFFDREHFPWMAALEAQTNVIREELLGIIADPgDALRPYIRLDEGSpqskwTPLDRSLDWGACFLWEYGAPNA 291
Cdd:COG3555    3 FSGLPTTPFFDRAQFPWLAELEANWPTIRAELLALLAEI-EALPPYHDISFDQ-----ANIFFDRGWKRFYLYWYGERHP 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304 292 PVLERCPATAEALRAIPRAdipgrgPTAFFSLLRPRKRIPPHTGVTNTRTIVHLPLVVP--PGCAFRVGGETRPWRVGEA 369
Cdd:COG3555   77 SNCALCPKTAALLEQIPGV------KAAMFSILPPGKHIPPHRGPYNGRLRYHLGLIVPndDRCRIRVDGETYSWREGEA 150

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 345135304 370 FAFDDTIEHEAWNDSDALRAVLIFDVWNPHLSLEERdVIARYFRAADAS 418
Cdd:COG3555  151 VLFDDTYEHEAWNDTDETRVVLFCDVWRPMLSPWER-AVNRLFAAILMR 198
Asp_Arg_Hydrox pfam05118
Aspartyl/Asparaginyl beta-hydroxylase; Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases ...
 233-398 1.46e-48

Aspartyl/Asparaginyl beta-hydroxylase; Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyze oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalysing oxidation of a free alpha-amino acid. The structure of proline 3-hydroxylase contains the conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. This family represent the arginine, asparagine and proline hydroxylases. The aspartyl/asparaginyl beta-hydroxylase (EC:1.14.11.16) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins.


Pssm-ID: 461552  Cd Length: 157  Bit Score: 162.82  E-value: 1.46e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  233 EAQTNVIREELLGIIADPGDALRPyirLDEGSPQskwtplDRSLDWGACFLWEYGAPNAPVLERCPATAEALRAIPRADI 312
Cdd:pfam05118   1 EANWQVIRDELLALLKQEEGLPPY---EEEALDD------FGDIGWKTFYLYAYGARLPENCALCPKTAALLEQPGVKAS 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  313 PGRGPTAFFSLLRPRKRIPPHTGVTNTRTIVHLPLVVPPGCAFRVGGETRPWRVGEAFAFDDTIEHEAWNDSDALRAVLI 392
Cdd:pfam05118  72 GCPRGQAMFSRLQPGTHIPPHRGPTNGRLRCHLGLVVPPGCRIRVGGETRTWREGECLLFDDSFEHEAWNETDEPRVVLL 151


                  ....*.
gi 345135304  393 FDVWNP 398
Cdd:pfam05118 152 VDVWRP 157
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 8-172 6.51e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 77.46  E-value: 6.51e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   8 QLLAQAMQAARRGDGAAQLafLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLM 87
Cdd:COG2956   80 LELAQDYLKAGLLDRAEEL--LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQ 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  88 GDDEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWHAVLQLAAGTAQIAPELrpvldqarAWIAREQARVG 167
Cdd:COG2956  158 GDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL--------AELYEKLGDPE 229


                 ....*
gi 345135304 168 EAVAA 172
Cdd:COG2956  230 EALEL 234
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 13-130 6.91e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 54.70  E-value: 6.91e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   13 AMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMGDDEG 92
Cdd:TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 345135304   93 ERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQA 130
Cdd:TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA 453
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 5-186 2.18e-06

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 50.08  E-value: 2.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304    5 QTEQLLAQAMQAARRGDGAAQLAFLDRACATaPRDPLVLNSRGmlhLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQ 84
Cdd:PRK11447  572 QSDQVLETANRLRDSGKEAEAEALLRQQPPS-TRIDLTLADWA---QQRGDYAAARAAYQRVLTREPGNADARLGLIEVD 647

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   85 RLMGDDEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWhavlqlaagtAQIAPEL-RPVLDQARAWIAREQ 163
Cdd:PRK11447  648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF----------NRLIPQAkSQPPSMESALVLRDA 717

                         170       180
                  ....*....|....*....|...
gi 345135304  164 ARVgeaVAAATDPYIAPLSQRDA 186
Cdd:PRK11447  718 ARF---EAQTGQPQQALETYKDA 737
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 7-81 1.96e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 46.08  E-value: 1.96e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 345135304   7 EQLLAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTA-PALWMNLA 81
Cdd:cd24142    1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLG 76
Coatomer_E pfam04733
Coatomer epsilon subunit; This family represents the epsilon subunit of the coatomer complex, ...
 2-99 9.75e-03

Coatomer epsilon subunit; This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.


Pssm-ID: 398419 [Multi-domain]  Cd Length: 288  Bit Score: 37.84  E-value: 9.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304    2 SDRQTEQLLAQAMQAARRGDGAAQLAFL--DRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMN 79
Cdd:pfam04733 159 DEDATLTQLANAWVKLAVGGEKIQDAYYifQEFSEKYDSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLIN 238

                          90       100
                  ....*....|....*....|.
gi 345135304   80 LAKAQRLMG-DDEGERKSLEQ 99
Cdd:pfam04733 239 LVVCALHLGkPAEVSNRNLSQ 259
 
Name Accession Description Interval E-value
LpxO2 COG3555
Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily [Posttranslational modification, ...
 212-418 2.94e-77

Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442776  Cd Length: 220  Bit Score: 239.01  E-value: 2.94e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304 212 YPFLPADEFFDREHFPWMAALEAQTNVIREELLGIIADPgDALRPYIRLDEGSpqskwTPLDRSLDWGACFLWEYGAPNA 291
Cdd:COG3555    3 FSGLPTTPFFDRAQFPWLAELEANWPTIRAELLALLAEI-EALPPYHDISFDQ-----ANIFFDRGWKRFYLYWYGERHP 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304 292 PVLERCPATAEALRAIPRAdipgrgPTAFFSLLRPRKRIPPHTGVTNTRTIVHLPLVVP--PGCAFRVGGETRPWRVGEA 369
Cdd:COG3555   77 SNCALCPKTAALLEQIPGV------KAAMFSILPPGKHIPPHRGPYNGRLRYHLGLIVPndDRCRIRVDGETYSWREGEA 150

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 345135304 370 FAFDDTIEHEAWNDSDALRAVLIFDVWNPHLSLEERdVIARYFRAADAS 418
Cdd:COG3555  151 VLFDDTYEHEAWNDTDETRVVLFCDVWRPMLSPWER-AVNRLFAAILMR 198
Asp_Arg_Hydrox pfam05118
Aspartyl/Asparaginyl beta-hydroxylase; Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases ...
 233-398 1.46e-48

Aspartyl/Asparaginyl beta-hydroxylase; Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyze oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalysing oxidation of a free alpha-amino acid. The structure of proline 3-hydroxylase contains the conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. This family represent the arginine, asparagine and proline hydroxylases. The aspartyl/asparaginyl beta-hydroxylase (EC:1.14.11.16) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins.


Pssm-ID: 461552  Cd Length: 157  Bit Score: 162.82  E-value: 1.46e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  233 EAQTNVIREELLGIIADPGDALRPyirLDEGSPQskwtplDRSLDWGACFLWEYGAPNAPVLERCPATAEALRAIPRADI 312
Cdd:pfam05118   1 EANWQVIRDELLALLKQEEGLPPY---EEEALDD------FGDIGWKTFYLYAYGARLPENCALCPKTAALLEQPGVKAS 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  313 PGRGPTAFFSLLRPRKRIPPHTGVTNTRTIVHLPLVVPPGCAFRVGGETRPWRVGEAFAFDDTIEHEAWNDSDALRAVLI 392
Cdd:pfam05118  72 GCPRGQAMFSRLQPGTHIPPHRGPTNGRLRCHLGLVVPPGCRIRVGGETRTWREGECLLFDDSFEHEAWNETDEPRVVLL 151


                  ....*.
gi 345135304  393 FDVWNP 398
Cdd:pfam05118 152 VDVWRP 157
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 8-172 6.51e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 77.46  E-value: 6.51e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   8 QLLAQAMQAARRGDGAAQLafLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLM 87
Cdd:COG2956   80 LELAQDYLKAGLLDRAEEL--LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQ 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  88 GDDEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWHAVLQLAAGTAQIAPELrpvldqarAWIAREQARVG 167
Cdd:COG2956  158 GDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL--------AELYEKLGDPE 229


                 ....*
gi 345135304 168 EAVAA 172
Cdd:COG2956  230 EALEL 234
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 3-139 2.72e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 72.53  E-value: 2.72e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   3 DRQTEQLLAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAK 82
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 345135304  83 AQRLMGDDEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWHAVLQLAA 139
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
10-203 3.01e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.27  E-value: 3.01e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  10 LAQAMQAARRGDGAaqLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMGD 89
Cdd:COG0457   48 LGLAYLRLGRYEEA--LADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGR 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  90 DEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQAL----QAWHAVLQLAAGTAQIAPELRPVLDQARAWIAREQAR 165
Cdd:COG0457  126 YDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALelleKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 345135304 166 VGEAVAAATDPYIAPLSQRDARRTRAFIDHALGRRRIY 203
Cdd:COG0457  206 ALRKKLAILTLAALAELLLLALALLLALRLAALALYQY 243
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
10-206 3.25e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.88  E-value: 3.25e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  10 LAQAMQAARRGDGAaqLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMGD 89
Cdd:COG0457   14 LGLAYRRLGRYEEA--IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGR 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  90 DEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWHAVLQLAAGTAQIAPELRPVLD-QARAWIAREQARVGE 168
Cdd:COG0457   92 YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEkLGRYEEALELLEKLE 171

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 345135304 169 AVAAATDPYIAPLSQRDARRTRAFIDHALGRRRIYTNE 206
Cdd:COG0457  172 AAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 8-217 5.55e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.79  E-value: 5.55e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   8 QLLAQAMQAARRGDGAaqLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLM 87
Cdd:COG3914   82 ELAALLLQALGRYEEA--LALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  88 GDDEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWHAVLQLAAGTAQIAPELRPVLDQARAWIAREQARVG 167
Cdd:COG3914  160 GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEEL 239

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 345135304 168 EAVAAATDPYIAPLS-QRDARRTRAFIdhaLGRRRIYTNECAGVCYPFLPA 217
Cdd:COG3914  240 LAALARGPSELSPFAlLYLPDDDPAEL---LALARAWAQLVAAAAAPELPP 287
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
37-200 2.42e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.49  E-value: 2.42e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  37 PRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMGDDEGERKSLEQVLSLDRRDFLGQLRMAE 116
Cdd:COG0457    5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304 117 LHQRLGETQQALQAWHAVLqlaagtaQIAPELRPVLDQaRAWIAREQARVGEAVAAATDPYIAPLSQRDARRTRAFIDHA 196
Cdd:COG0457   85 ALQALGRYEEALEDYDKAL-------ELDPDDAEALYN-LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156


                 ....
gi 345135304 197 LGRR 200
Cdd:COG0457  157 LGRY 160
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 24-138 2.50e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.79  E-value: 2.50e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  24 AQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMGDDEGERKSLEQVLSL 103
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 345135304 104 DRRDFLGQLRMAELHQRLGETQQALQAWHAVLQLA 138
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 9-136 1.50e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 61.67  E-value: 1.50e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   9 LLAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMG 88
Cdd:COG2956  147 YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 345135304  89 DDEGERKSLEQVLSLDRRDFLgQLRMAELHQRLGETQQALQAWHAVLQ 136
Cdd:COG2956  227 DPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 10-148 2.62e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.82  E-value: 2.62e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  10 LAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMGD 89
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 345135304  90 DEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWHAVLQLAAGTAQIAPEL 148
Cdd:COG2956   92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL 150
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
10-197 5.62e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.08  E-value: 5.62e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  10 LAQAMQAARRGDGAAQLAFLDRAcATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMGD 89
Cdd:COG4785   44 LALALAAAALAAAALAAERIDRA-LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGD 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  90 DEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWhavlqlaagtaQIAPELRPVLDQARAWIAREQARVGEA 169
Cdd:COG4785  123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADL-----------EKALELDPNDPERALWLYLAERKLDPE 191

                        170       180       190
                 ....*....|....*....|....*....|.
gi 345135304 170 VAAA---TDPYIAPLSQRDARRTRAFIDHAL 197
Cdd:COG4785  192 KALAlllEDWATAYLLQGDTEEARELFKLAL 222
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
9-148 1.76e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.54  E-value: 1.76e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   9 LLAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMG 88
Cdd:COG4785   76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLG 155

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 345135304  89 DDEGERKSLEQVLSLDRRD--FLGQLRMAELHQRLGETQQALQAWHAVLQLAAGTAQIAPEL 148
Cdd:COG4785  156 RYELAIADLEKALELDPNDpeRALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEAREL 217
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 3-104 2.78e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 52.66  E-value: 2.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   3 DRQTEQLLAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAK 82
Cdd:COG5010   51 AKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAA 130

                         90       100
                 ....*....|....*....|..
gi 345135304  83 AQRLMGDDEGERKSLEQVLSLD 104
Cdd:COG5010  131 LLLSLGQDDEAKAALQRALGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
49-143 5.96e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.17  E-value: 5.96e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  49 LHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMGDDEgERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQAL 128
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYD-EAIALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|....*
gi 345135304 129 QAWHAVLQLAAGTAQ 143
Cdd:COG3063   80 AYLERALELDPSALR 94
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 13-130 6.91e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 54.70  E-value: 6.91e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   13 AMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMGDDEG 92
Cdd:TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 345135304   93 ERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQA 130
Cdd:TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA 453
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 4-138 7.12e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.50  E-value: 7.12e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   4 RQTEQLLAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKA 83
Cdd:COG5010   18 TKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALL 97

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 345135304  84 QRLMGDDEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWHAVLQLA 138
Cdd:COG5010   98 YSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 42-173 1.60e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.19  E-value: 1.60e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  42 VLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMGDDEGERKSLEQVLSLDRRDFLGQLRMAELHQRL 121
Cdd:COG4783    6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 345135304 122 GETQQALQAWHAVLQLAAGTAQIAPELrpvldqarAWIAREQARVGEAVAAA 173
Cdd:COG4783   86 GDYDEALALLEKALKLDPEHPEAYLRL--------ARAYRALGRPDEAIAAL 129
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 9-107 1.88e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.62  E-value: 1.88e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   9 LLAQAMQAARRGDGAAQLafLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMG 88
Cdd:COG4235   22 LLGRAYLRLGRYDEALAA--YEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99

                         90
                 ....*....|....*....
gi 345135304  89 DDEGERKSLEQVLSLDRRD 107
Cdd:COG4235  100 DYAEAIAAWQKLLALLPAD 118
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
16-106 7.53e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 7.53e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  16 AARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADmFARAAKEDPTAPALWMNLAKAQRLMGDDEGERK 95
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                         90
                 ....*....|.
gi 345135304  96 SLEQVLSLDRR 106
Cdd:COG3063   81 YLERALELDPS 91
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 5-186 2.18e-06

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 50.08  E-value: 2.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304    5 QTEQLLAQAMQAARRGDGAAQLAFLDRACATaPRDPLVLNSRGmlhLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQ 84
Cdd:PRK11447  572 QSDQVLETANRLRDSGKEAEAEALLRQQPPS-TRIDLTLADWA---QQRGDYAAARAAYQRVLTREPGNADARLGLIEVD 647

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   85 RLMGDDEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWhavlqlaagtAQIAPEL-RPVLDQARAWIAREQ 163
Cdd:PRK11447  648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF----------NRLIPQAkSQPPSMESALVLRDA 717

                         170       180
                  ....*....|....*....|...
gi 345135304  164 ARVgeaVAAATDPYIAPLSQRDA 186
Cdd:PRK11447  718 ARF---EAQTGQPQQALETYKDA 737
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 3-140 3.43e-06

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 48.75  E-value: 3.43e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   3 DRQTEQLLAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALwmnlak 82
Cdd:COG3071  221 KRQWDPRLVRLYGRLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAY------ 294

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 345135304  83 aqrlmgddegerksleqvlsldrrdflgqLRMAELHQRLGETQQALQAWHAVLQLAAG 140
Cdd:COG3071  295 -----------------------------AELARLLEQLGDPEEAAEHYRKALALALG 323
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 7-173 4.40e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.84  E-value: 4.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   7 EQLLAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMN------- 79
Cdd:COG3914    2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALlllaall 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  80 --LAKAQRLMGDDEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWHAVLQLAAGTAQIApelrpvldQARA 157
Cdd:COG3914   82 elAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAY--------LNLG 153

                        170
                 ....*....|....*.
gi 345135304 158 WIAREQARVGEAVAAA 173
Cdd:COG3914  154 EALRRLGRLEEAIAAL 169
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 7-81 1.96e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 46.08  E-value: 1.96e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 345135304   7 EQLLAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTA-PALWMNLA 81
Cdd:cd24142    1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLG 76
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 16-101 2.22e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.00  E-value: 2.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   16 AARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMGDDEGERK 95
Cdd:TIGR02917 813 LYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892


                  ....*.
gi 345135304   96 SLEQVL 101
Cdd:TIGR02917 893 ELDKLL 898
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 8-165 3.19e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 46.23  E-value: 3.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304    8 QLLAQAMQAARRGDGAAQLAflDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALwMNLAKAQRLM 87
Cdd:TIGR02917 673 IGLAQLLLAAKRTESAKKIA--KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLAS 749

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 345135304   88 GDDEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWHAVLQLaagtaqiAPELRPVLDQArAWIAREQAR 165
Cdd:TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK-------APDNAVVLNNL-AWLYLELKD 819
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 14-102 4.23e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.67  E-value: 4.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  14 MQAARRGDGAAQLAFLDRACATAPRDPLVLNSR---GMLHLQRQEYAEAADMFARAAKEDPT---APALWMNLAKAQRLM 87
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALywlGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80

                         90
                 ....*....|....*
gi 345135304  88 GDDEGERKSLEQVLS 102
Cdd:COG1729   81 GDYDKARATLEELIK 95
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 9-183 6.49e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.46  E-value: 6.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304    9 LLAQAMQaaRRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMG 88
Cdd:TIGR02917 572 ALAQYYL--GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMK 649

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   89 DDEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWHAVlqlaagtaQIAPELRPVLDQARAWIAREQARVGE 168
Cdd:TIGR02917 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL--------QKQHPKAALGFELEGDLYLRQKDYPA 721

                         170
                  ....*....|....*.
gi 345135304  169 AVAAATDPY-IAPLSQ 183
Cdd:TIGR02917 722 AIQAYRKALkRAPSSQ 737
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 9-198 2.16e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 2.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304    9 LLAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMG 88
Cdd:TIGR02917 230 LLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   89 DDEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALqawhAVLQLAAGTAQIAPELRPVL----------DQARAW 158
Cdd:TIGR02917 310 NLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI----ATLSPALGLDPDDPAALSLLgeaylalgdfEKAAEY 385

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 345135304  159 IAREQARVGEAVAAATDPYIAPLSQRDARRTRAFIDHALG 198
Cdd:TIGR02917 386 LAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ 425
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 10-128 2.22e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 2.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   10 LAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMGD 89
Cdd:TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN 514

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 345135304   90 DEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQAL 128
Cdd:TIGR02917 515 PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAV 553
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 48-136 4.97e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.59  E-value: 4.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  48 MLHLQRQEYAEAADMFARAAKEDPT---APALWMNLAKAQRLMGDDEGERKSLEQVLSLDRRDFLGQ---LRMAELHQRL 121
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdalLKLGLSYLEL 80

                         90
                 ....*....|....*
gi 345135304 122 GETQQALQAWHAVLQ 136
Cdd:COG1729   81 GDYDKARATLEELIK 95
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
68-144 1.33e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.38  E-value: 1.33e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 345135304  68 KEDPTAPALWMNLAKAQRLMGDDEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWHAVLQLAAGTAQI 144
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 46-158 1.53e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 40.28  E-value: 1.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  46 RGMLHLQRQEYAEAADMFARAAKEDPTAPALWMNLAKAQRLMGDDEGERKSLEQVLSLDRRDFLG-QLRMAELHQRLGET 124
Cdd:COG3071   22 EGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQA 101

                         90       100       110
                 ....*....|....*....|....*....|....
gi 345135304 125 QQALQAWHAVLQLAAGTAQIAPELRPVLDQARAW 158
Cdd:COG3071  102 EQALATLEALRAGAPRHPQVLRLLLQAYRQLGDW 135
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
10-157 2.42e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 39.48  E-value: 2.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304  10 LAQAMQAARRGDGAAQLAfldRACATAPR--DPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPT--APALWMNLAKAQR 85
Cdd:COG4700   95 LADALLELGRYDEAIELY---EEALTGIFadDPHILLGLAQALFELGRYAEALETLEKLIAKNPDfkSSDAHLLYARALE 171

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 345135304  86 LMGDDEGERKSLEQvlsLDRR--DFLGQLRMAELHQRLGETQQALQAWHAVLQLAAG-TAQIAPELRPVLDQARA 157
Cdd:COG4700  172 ALGDLEAAEAELEA---LARRysGPEARYRYAKFLARQGRTAEAKELLEEILDEAKHmPKHYRRLNREWIREAKK 243
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 11-140 2.87e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 40.07  E-value: 2.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   11 AQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPAL--WMNLAKAQRL-- 86
Cdd:PRK11447  274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRdkWESLLKVNRYwl 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   87 ---MGD--------DEGERKsLEQVLSLDRRDF-----LGQLRMAElhqrlGETQQALQAWHAVLQLAAG 140
Cdd:PRK11447  354 liqQGDaalkannlAQAERL-YQQARQVDNTDSyavlgLGDVAMAR-----KDYAAAERYYQQALRMDPG 417
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 4-71 2.95e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 39.97  E-value: 2.95e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 345135304    4 RQTEQLLAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDP 71
Cdd:TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 9-137 3.03e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.07  E-value: 3.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304    9 LLAQAMQAARRGDGAAQLAFLDRACATAPRD--PLVLNSRGMLHLQRQEYAEAADMFARAAKEDPtaPALWMNLAKAQRL 86
Cdd:TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEiePALALAQYYLGKGQLKKALAILNEAADAAPDS--PEAWLMLGRAQLA 613

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 345135304   87 MGDDEGERKSLEQVLSLDRRDFLGQLRMAELHQRLGETQQALQAWHAVLQL 137
Cdd:TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 10-78 3.87e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.29  E-value: 3.87e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 345135304  10 LAQAMQAARRGDGAAQLafLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWM 78
Cdd:COG4235   57 LAEALLAAGDTEEAEEL--LERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 9-104 6.59e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.17  E-value: 6.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304   9 LLAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALwMNLAKAQRLMG 88
Cdd:COG2956  181 LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LALADLLERKE 259

                         90
                 ....*....|....*.
gi 345135304  89 DDEGERKSLEQVLSLD 104
Cdd:COG2956  260 GLEAALALLERQLRRH 275
TPR_hemY_coli TIGR00540
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ...
 3-83 9.07e-03

heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]


Pssm-ID: 273126 [Multi-domain]  Cd Length: 367  Bit Score: 38.04  E-value: 9.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304    3 DRQTEQLLAQAMQAARRGDGAAQLAFLDRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPAlWMNLAK 82
Cdd:TIGR00540 271 KKEWDPELLRLYGRLQPGDPSPLIKRAEKWLKKHPDDALLLLALGRLCLRQQLWGKAQSYLEASLSLAPTEEA-HLELAQ 349


                  .
gi 345135304   83 A 83
Cdd:TIGR00540 350 L 350
Coatomer_E pfam04733
Coatomer epsilon subunit; This family represents the epsilon subunit of the coatomer complex, ...
 2-99 9.75e-03

Coatomer epsilon subunit; This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.


Pssm-ID: 398419 [Multi-domain]  Cd Length: 288  Bit Score: 37.84  E-value: 9.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345135304    2 SDRQTEQLLAQAMQAARRGDGAAQLAFL--DRACATAPRDPLVLNSRGMLHLQRQEYAEAADMFARAAKEDPTAPALWMN 79
Cdd:pfam04733 159 DEDATLTQLANAWVKLAVGGEKIQDAYYifQEFSEKYDSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLIN 238

                          90       100
                  ....*....|....*....|.
gi 345135304   80 LAKAQRLMG-DDEGERKSLEQ 99
Cdd:pfam04733 239 LVVCALHLGkPAEVSNRNLSQ 259
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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