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Conserved domains on  [gi|189053170|dbj|BAG34792|]
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unnamed protein product [Homo sapiens]

Protein Classification

NDUFAF4 family protein( domain architecture ID 10536070)

NDUFAF4 family protein similar to mammalian NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4 (NDUFAF4) that is involved in the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UPF0240 pfam06784
Uncharacterized protein family (UPF0240);
1-167 5.12e-72

Uncharacterized protein family (UPF0240);


:

Pssm-ID: 462009  Cd Length: 171  Bit Score: 214.48  E-value: 5.12e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189053170    1 MGA---LVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEKLLSFLKDVYVDSKDPVs 77
Cdd:pfam06784   1 MGAvvsRVTRPIRNFNVENRAHRVISKEKPKPAPKHPSTQKDLERVLSEHPEIKEELNRKDEQLLSRLKDVYVTSHDPV- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189053170   78 slqvkaAETCQEPK---EFRLPKDHH------FDMINIKSIPKGKISIVEALTLLNNHKLFPETWTAEKIMQEYQLEQKD 148
Cdd:pfam06784  80 ------ADPEQEIKqssERRLPKNRSkvedfeFGYLEPETVPKGKITLRQALELLSNHQTDPQKWTAEKIAQEYKLEEKD 153

                         170
                  ....*....|....*....
gi 189053170  149 VNSLLKYFVTFEVEIfPPE 167
Cdd:pfam06784 154 VKNLLKYFKPFEVYI-PEK 171
 
Name Accession Description Interval E-value
UPF0240 pfam06784
Uncharacterized protein family (UPF0240);
1-167 5.12e-72

Uncharacterized protein family (UPF0240);


Pssm-ID: 462009  Cd Length: 171  Bit Score: 214.48  E-value: 5.12e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189053170    1 MGA---LVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEKLLSFLKDVYVDSKDPVs 77
Cdd:pfam06784   1 MGAvvsRVTRPIRNFNVENRAHRVISKEKPKPAPKHPSTQKDLERVLSEHPEIKEELNRKDEQLLSRLKDVYVTSHDPV- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189053170   78 slqvkaAETCQEPK---EFRLPKDHH------FDMINIKSIPKGKISIVEALTLLNNHKLFPETWTAEKIMQEYQLEQKD 148
Cdd:pfam06784  80 ------ADPEQEIKqssERRLPKNRSkvedfeFGYLEPETVPKGKITLRQALELLSNHQTDPQKWTAEKIAQEYKLEEKD 153

                         170
                  ....*....|....*....
gi 189053170  149 VNSLLKYFVTFEVEIfPPE 167
Cdd:pfam06784 154 VKNLLKYFKPFEVYI-PEK 171
 
Name Accession Description Interval E-value
UPF0240 pfam06784
Uncharacterized protein family (UPF0240);
1-167 5.12e-72

Uncharacterized protein family (UPF0240);


Pssm-ID: 462009  Cd Length: 171  Bit Score: 214.48  E-value: 5.12e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189053170    1 MGA---LVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEKLLSFLKDVYVDSKDPVs 77
Cdd:pfam06784   1 MGAvvsRVTRPIRNFNVENRAHRVISKEKPKPAPKHPSTQKDLERVLSEHPEIKEELNRKDEQLLSRLKDVYVTSHDPV- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189053170   78 slqvkaAETCQEPK---EFRLPKDHH------FDMINIKSIPKGKISIVEALTLLNNHKLFPETWTAEKIMQEYQLEQKD 148
Cdd:pfam06784  80 ------ADPEQEIKqssERRLPKNRSkvedfeFGYLEPETVPKGKITLRQALELLSNHQTDPQKWTAEKIAQEYKLEEKD 153

                         170
                  ....*....|....*....
gi 189053170  149 VNSLLKYFVTFEVEIfPPE 167
Cdd:pfam06784 154 VKNLLKYFKPFEVYI-PEK 171
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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