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Conserved domains on  [gi|84368718|dbj|BAE69876|]
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exodeoxyribonuclease VII small subunit [Xanthomonas oryzae pv. oryzae MAFF 311018]

Protein Classification

exodeoxyribonuclease VII small subunit( domain architecture ID 10011590)

small subunit of exodeoxyribonuclease VII, which degrades single-stranded DNA bidirectionally into nucleoside 5'-phosphates

EC:  3.1.11.6
Gene Ontology:  GO:0008855|GO:0004527|GO:0006308
PubMed:  6284744
SCOP:  4002913

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK00977 PRK00977
exodeoxyribonuclease VII small subunit; Provisional
 9-76 4.07e-22

exodeoxyribonuclease VII small subunit; Provisional


:

Pssm-ID: 179195  Cd Length: 80  Bit Score: 81.49  E-value: 4.07e-22
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 84368718   9 TSPVARFEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRVRLLTDPARPELA 76
Cdd:PRK00977  6 KSKPLSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDEDGKEAS 73
 
Name Accession Description Interval E-value
PRK00977 PRK00977
exodeoxyribonuclease VII small subunit; Provisional
 9-76 4.07e-22

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 179195  Cd Length: 80  Bit Score: 81.49  E-value: 4.07e-22
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 84368718   9 TSPVARFEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRVRLLTDPARPELA 76
Cdd:PRK00977  6 KSKPLSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDEDGKEAS 73
XseB COG1722
Exonuclease VII small subunit [Replication, recombination and repair];
15-81 2.44e-20

Exonuclease VII small subunit [Replication, recombination and repair];


Pssm-ID: 441328  Cd Length: 74  Bit Score: 76.81  E-value: 2.44e-20
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 84368718 15 FEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRVRLLTDPARPELAQAFEP 81
Cdd:COG1722  7 FEEALAELEEIVERLESGELPLEESLALYERGVALAKRCQKKLDEAEQKVEKLLEDEDGELEEPFDP 73
Exonuc_VII_S pfam02609
Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11. ...
 15-65 1.69e-15

Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11.6 This enzyme catalyzes exonucleolytic cleavage in either 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.


Pssm-ID: 460618  Cd Length: 51  Bit Score: 63.56  E-value: 1.69e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 84368718   15 FEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRVR 65
Cdd:pfam02609  1 FEEALAELEEIVEKLESGELSLEESLKLYEEGIKLLKFCEKKLDEAEQKIE 51
xseB TIGR01280
exodeoxyribonuclease VII, small subunit; This protein is the small subunit for ...
 15-67 2.24e-15

exodeoxyribonuclease VII, small subunit; This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides. [DNA metabolism, Degradation of DNA]


Pssm-ID: 273536  Cd Length: 54  Bit Score: 63.60  E-value: 2.24e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 84368718   15 FEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRVRLL 67
Cdd:TIGR01280  2 FEEALAELEEIVEKLESGDLSLEESLKLYEEGIKLLKHCQKKLEEAEQKIEKL 54
 
Name Accession Description Interval E-value
PRK00977 PRK00977
exodeoxyribonuclease VII small subunit; Provisional
 9-76 4.07e-22

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 179195  Cd Length: 80  Bit Score: 81.49  E-value: 4.07e-22
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 84368718   9 TSPVARFEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRVRLLTDPARPELA 76
Cdd:PRK00977  6 KSKPLSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDEDGKEAS 73
XseB COG1722
Exonuclease VII small subunit [Replication, recombination and repair];
15-81 2.44e-20

Exonuclease VII small subunit [Replication, recombination and repair];


Pssm-ID: 441328  Cd Length: 74  Bit Score: 76.81  E-value: 2.44e-20
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 84368718 15 FEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRVRLLTDPARPELAQAFEP 81
Cdd:COG1722  7 FEEALAELEEIVERLESGELPLEESLALYERGVALAKRCQKKLDEAEQKVEKLLEDEDGELEEPFDP 73
Exonuc_VII_S pfam02609
Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11. ...
 15-65 1.69e-15

Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11.6 This enzyme catalyzes exonucleolytic cleavage in either 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.


Pssm-ID: 460618  Cd Length: 51  Bit Score: 63.56  E-value: 1.69e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 84368718   15 FEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRVR 65
Cdd:pfam02609  1 FEEALAELEEIVEKLESGELSLEESLKLYEEGIKLLKFCEKKLDEAEQKIE 51
xseB TIGR01280
exodeoxyribonuclease VII, small subunit; This protein is the small subunit for ...
 15-67 2.24e-15

exodeoxyribonuclease VII, small subunit; This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides. [DNA metabolism, Degradation of DNA]


Pssm-ID: 273536  Cd Length: 54  Bit Score: 63.60  E-value: 2.24e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 84368718   15 FEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRVRLL 67
Cdd:TIGR01280  2 FEEALAELEEIVEKLESGDLSLEESLKLYEEGIKLLKHCQKKLEEAEQKIEKL 54
PRK14069 PRK14069
exodeoxyribonuclease VII small subunit; Provisional
 8-68 3.20e-11

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172559  Cd Length: 95  Bit Score: 54.26  E-value: 3.20e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 84368718   8 ETSPVARFEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRVRLLT 68
Cdd:PRK14069  3 EKKSKISFEDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGILDDAEGKIEALT 63
PRK14066 PRK14066
exodeoxyribonuclease VII small subunit; Provisional
 12-67 1.73e-09

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172556  Cd Length: 75  Bit Score: 49.07  E-value: 1.73e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 84368718  12 VARFEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRVRLL 67
Cdd:PRK14066  3 VEKFETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKLDEAERRVEVL 58
PRK14067 PRK14067
exodeoxyribonuclease VII small subunit; Provisional
 15-69 6.52e-08

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172557  Cd Length: 80  Bit Score: 45.19  E-value: 6.52e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 84368718  15 FEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRVRLLTD 69
Cdd:PRK14067  9 FEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKARNEIRLFTE 63
PRK14070 PRK14070
exodeoxyribonuclease VII small subunit; Provisional
 19-64 2.74e-07

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 184486  Cd Length: 69  Bit Score: 43.47  E-value: 2.74e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 84368718  19 LEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRV 64
Cdd:PRK14070  1 MKELEEIVNRLENEDLPLEESIKLFERGVELYRKCKEILQQNRLKI 46
PRK14068 PRK14068
exodeoxyribonuclease VII small subunit; Provisional
 15-67 3.58e-07

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 184485  Cd Length: 76  Bit Score: 43.32  E-value: 3.58e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 84368718  15 FEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRVRLL 67
Cdd:PRK14068  8 FEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDL 60
PRK14064 PRK14064
exodeoxyribonuclease VII small subunit; Provisional
 15-75 1.41e-06

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172554  Cd Length: 75  Bit Score: 41.74  E-value: 1.41e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 84368718  15 FEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAELRVRLLTDPARPEL 75
Cdd:PRK14064  8 FEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVTDAGEEI 68
PRK14063 PRK14063
exodeoxyribonuclease VII small subunit; Provisional
 15-61 1.14e-04

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 184483  Cd Length: 76  Bit Score: 36.73  E-value: 1.14e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 84368718  15 FEQSLEELEQLVQKMEVGDLSLEQSLTAYERGIGLYRDCQQALEQAE 61
Cdd:PRK14063  7 FEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQ 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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