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Conserved domains on  [gi|84368603|dbj|BAE69761|]
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GumN protein [Xanthomonas oryzae pv. oryzae MAFF 311018]

Protein Classification

TraB/GumN family protein( domain architecture ID 12999763)

TraB/GumN family protein similar to GumN, a poorly characterized protein that is part of the large gum cluster of pathogenicity factors of the plant pathogen Xanthomonas

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GumN cd14788
poorly characterized family of proteins related to gumN pathogenicity factor of Xanthomonas; ...
41-326 4.52e-138

poorly characterized family of proteins related to gumN pathogenicity factor of Xanthomonas; GumN, a poorly characterized protein, is part of the large gum cluster of pathogenicity factors of the plant pathogen Xanthomonas. Except for GumN, the gum cluster is conserved, and proteins of this operon are involved in the production of xanthan, an extracellular polysaccharide that promotes plant disease. Xanthomonas campestri is responsible for 'black rot' disease in certain crop plants. GumN has sequence similarity to the Tiki/TraB protease family, but lacks the typical conserved residues of the active site.


:

Pssm-ID: 350613  Cd Length: 286  Bit Score: 392.37  E-value: 4.52e-138
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603  41 LWKVSKGEHVLWILGTQSPLRKRLQWQSTEVETSIGQSQQVLMAPSIALDVGMGVFGRLTLLPSAMKAMKNEDGRELREV 120
Cdd:cd14788   1 LWKVSKGDHVLWVLGTLSPLPKKMEWRSDEVERALAGSQEVLLPPGVSVKAGVGFFGRLLLLPSLLGARKNPDGATLADV 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603 121 LPPDLYARWSVAKARYLGSDQGVERKRPMLAAGELYQAALKRAGLTRAPVIWSVVERAAKRAGIKPTPTVLDHKIADPRQ 200
Cdd:cd14788  81 LPPDLYARWEALKARYIGRDDGVERWRPIFAALELYSAALKKAGLTSGGGVTPVVEKLAKKHGVKVTPVGVELRIDDPRA 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603 201 ALKEFRAGGMNDIECFRRILVTVERDLPTMVERANAWSVGDLEVLRQLPHQDRQAACMSAVASSGAAKTRGIDDLERRMR 280
Cdd:cd14788 161 ALKEFKKSPLDDLACLAATLDRLEADLDAMRARANAWAVGDVAALRALPRADQRCACLDALTNAGLARKPGLADLPERVR 240
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*.
gi 84368603 281 DHWLSIATAALQRNRSTFAVLSISRLTAPDGYLARLQVPGYEVEAP 326
Cdd:cd14788 241 AAWLAAAEAALATNGVTFAVLPLRDLLAPDGVLARLRARGYTVEAP 286
 
Name Accession Description Interval E-value
GumN cd14788
poorly characterized family of proteins related to gumN pathogenicity factor of Xanthomonas; ...
41-326 4.52e-138

poorly characterized family of proteins related to gumN pathogenicity factor of Xanthomonas; GumN, a poorly characterized protein, is part of the large gum cluster of pathogenicity factors of the plant pathogen Xanthomonas. Except for GumN, the gum cluster is conserved, and proteins of this operon are involved in the production of xanthan, an extracellular polysaccharide that promotes plant disease. Xanthomonas campestri is responsible for 'black rot' disease in certain crop plants. GumN has sequence similarity to the Tiki/TraB protease family, but lacks the typical conserved residues of the active site.


Pssm-ID: 350613  Cd Length: 286  Bit Score: 392.37  E-value: 4.52e-138
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603  41 LWKVSKGEHVLWILGTQSPLRKRLQWQSTEVETSIGQSQQVLMAPSIALDVGMGVFGRLTLLPSAMKAMKNEDGRELREV 120
Cdd:cd14788   1 LWKVSKGDHVLWVLGTLSPLPKKMEWRSDEVERALAGSQEVLLPPGVSVKAGVGFFGRLLLLPSLLGARKNPDGATLADV 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603 121 LPPDLYARWSVAKARYLGSDQGVERKRPMLAAGELYQAALKRAGLTRAPVIWSVVERAAKRAGIKPTPTVLDHKIADPRQ 200
Cdd:cd14788  81 LPPDLYARWEALKARYIGRDDGVERWRPIFAALELYSAALKKAGLTSGGGVTPVVEKLAKKHGVKVTPVGVELRIDDPRA 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603 201 ALKEFRAGGMNDIECFRRILVTVERDLPTMVERANAWSVGDLEVLRQLPHQDRQAACMSAVASSGAAKTRGIDDLERRMR 280
Cdd:cd14788 161 ALKEFKKSPLDDLACLAATLDRLEADLDAMRARANAWAVGDVAALRALPRADQRCACLDALTNAGLARKPGLADLPERVR 240
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*.
gi 84368603 281 DHWLSIATAALQRNRSTFAVLSISRLTAPDGYLARLQVPGYEVEAP 326
Cdd:cd14788 241 AAWLAAAEAALATNGVTFAVLPLRDLLAPDGVLARLRARGYTVEAP 286
TraB COG3735
Uncharacterized conserved protein YbaP, TraB family [Function unknown];
29-326 9.69e-46

Uncharacterized conserved protein YbaP, TraB family [Function unknown];


Pssm-ID: 442949  Cd Length: 293  Bit Score: 157.05  E-value: 9.69e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603  29 AMVVRGVQPGPGLWKVSKGEHVLWILGTQSPLRKRLQWQSTEVETSIGQSQQVLMAPSIALDVGMGvfgrltlLPSAMKA 108
Cdd:COG3735  19 AAAAAAAQAGPLLWKVSKGGKTSYLFGTIHVLDPRDYPLPPAVEEALAAADTLVLELDPDDPDALA-------LQALMKL 91
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603 109 MKNEDGRELREVLPPDLYARWSVAKARYLGSDQGVERKRPMLAAGELYQAALKRAGLTRAPVIWSVVERAAKRAGiKPTp 188
Cdd:COG3735  92 MLLPDGKTLSDLLSPEEYARLEALLAALGLPLAALARLKPWFAALLLSLAALQKAGLDPETGVDMYLLKLAKAAG-KPV- 169
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603 189 tvldHKIADPRQALKEFRAGGMND-IECFRRILVTVERDLPTMVERANAWSVGDLEVLRQLPHQDrqaacmsavassgaa 267
Cdd:COG3735 170 ----VGLETVEEQLALLDSLPEEEqAEMLRETLDELEKGEAQLETLVDAWRAGDLAALEALLRED--------------- 230
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 84368603 268 kTRGIDDLERRMRD----HWLSIATAALQRNRSTFAVLSISRLTAPDGYLARLQVPGYEVEAP 326
Cdd:COG3735 231 -MAAYPEFYEALLDdrnrNWAPRIEALLKEPGTVFVAVGALHLPGEDGVLALLRARGYTVERV 292
TraB_PrgY_gumN pfam01963
TraB/PrgY/gumN family; This entry includes Tiki1/2 from humans, TraB/PrgY from the gut flora ...
41-325 5.44e-29

TraB/PrgY/gumN family; This entry includes Tiki1/2 from humans, TraB/PrgY from the gut flora Enterococcusfaecalis and gumN from the plant pathogen Xanthomonas. Tiki1 is homologous to TraB/PrgY. They have a pair of widely spaced GX2H motifs and a conserved glutamate. From the structural study, this group of proteins have been identified as an ancient metalloprotease clan with a common protein architecture (cobbled from the folds of the EreA/ChaN/PMT group) that mediates proteolytic activities. Tiki1 is a membrane-associated protease that inhibits Wnt via the cleavage of its amino terminus, diminishing Wnt's binding to receptors. TraB/PrgY is an inhibitor peptide that may act as a protease to inactivate the mating pheromone.


Pssm-ID: 426534  Cd Length: 262  Bit Score: 112.06  E-value: 5.44e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603    41 LWKVSKGEHVLWILGTQSPLRKRLQWQSTEVETSIGQSQQVlmapsiALDVGMGVFGRLTLLPSAMKAMKNEDGRELREV 120
Cdd:pfam01963   2 LWKISKGGTTVYLLGTIHVLPPSVYPLPPAIEEALEAADTV------VVELDLSRYTDPATQAALPKLGLLPDGKTLSDL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603   121 LPPDLYARWSVAKARYLGSDQGVERKRPMLAAGELYQAAL--KRAGLTRAPVIwSVVERAAKRAGIkptPTVLDHKIADP 198
Cdd:pfam01963  76 LSPELYARLQKALAKRGLPLAALDRMKPWLAALLLSLAELakQKAGLDPDLVD-RYLAKTAKRAGK---PVGGLETVEEQ 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603   199 RQALKEFRAGgmnDIECFRRILVTVERDLPTMVERANAWSVGDLEVLRQLPHQDRQAACMsavassgaaktrgIDDLERR 278
Cdd:pfam01963 152 LALLSLPDEE---QLEMLEETLDELEKGEDLLETLVEAWAEGDLEALELEAELKEAYPEL-------------YEVLLDE 215
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 84368603   279 MRDHWLSIATAALQRNRSTFAVLSISRLTAPDGYLARLQVPGYEVEA 325
Cdd:pfam01963 216 RNRYWAEKIEALLKEGGTVFVAVGAGHLPGEDGVLALLRKKGYTVER 262
 
Name Accession Description Interval E-value
GumN cd14788
poorly characterized family of proteins related to gumN pathogenicity factor of Xanthomonas; ...
41-326 4.52e-138

poorly characterized family of proteins related to gumN pathogenicity factor of Xanthomonas; GumN, a poorly characterized protein, is part of the large gum cluster of pathogenicity factors of the plant pathogen Xanthomonas. Except for GumN, the gum cluster is conserved, and proteins of this operon are involved in the production of xanthan, an extracellular polysaccharide that promotes plant disease. Xanthomonas campestri is responsible for 'black rot' disease in certain crop plants. GumN has sequence similarity to the Tiki/TraB protease family, but lacks the typical conserved residues of the active site.


Pssm-ID: 350613  Cd Length: 286  Bit Score: 392.37  E-value: 4.52e-138
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603  41 LWKVSKGEHVLWILGTQSPLRKRLQWQSTEVETSIGQSQQVLMAPSIALDVGMGVFGRLTLLPSAMKAMKNEDGRELREV 120
Cdd:cd14788   1 LWKVSKGDHVLWVLGTLSPLPKKMEWRSDEVERALAGSQEVLLPPGVSVKAGVGFFGRLLLLPSLLGARKNPDGATLADV 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603 121 LPPDLYARWSVAKARYLGSDQGVERKRPMLAAGELYQAALKRAGLTRAPVIWSVVERAAKRAGIKPTPTVLDHKIADPRQ 200
Cdd:cd14788  81 LPPDLYARWEALKARYIGRDDGVERWRPIFAALELYSAALKKAGLTSGGGVTPVVEKLAKKHGVKVTPVGVELRIDDPRA 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603 201 ALKEFRAGGMNDIECFRRILVTVERDLPTMVERANAWSVGDLEVLRQLPHQDRQAACMSAVASSGAAKTRGIDDLERRMR 280
Cdd:cd14788 161 ALKEFKKSPLDDLACLAATLDRLEADLDAMRARANAWAVGDVAALRALPRADQRCACLDALTNAGLARKPGLADLPERVR 240
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*.
gi 84368603 281 DHWLSIATAALQRNRSTFAVLSISRLTAPDGYLARLQVPGYEVEAP 326
Cdd:cd14788 241 AAWLAAAEAALATNGVTFAVLPLRDLLAPDGVLARLRARGYTVEAP 286
TraB COG3735
Uncharacterized conserved protein YbaP, TraB family [Function unknown];
29-326 9.69e-46

Uncharacterized conserved protein YbaP, TraB family [Function unknown];


Pssm-ID: 442949  Cd Length: 293  Bit Score: 157.05  E-value: 9.69e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603  29 AMVVRGVQPGPGLWKVSKGEHVLWILGTQSPLRKRLQWQSTEVETSIGQSQQVLMAPSIALDVGMGvfgrltlLPSAMKA 108
Cdd:COG3735  19 AAAAAAAQAGPLLWKVSKGGKTSYLFGTIHVLDPRDYPLPPAVEEALAAADTLVLELDPDDPDALA-------LQALMKL 91
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603 109 MKNEDGRELREVLPPDLYARWSVAKARYLGSDQGVERKRPMLAAGELYQAALKRAGLTRAPVIWSVVERAAKRAGiKPTp 188
Cdd:COG3735  92 MLLPDGKTLSDLLSPEEYARLEALLAALGLPLAALARLKPWFAALLLSLAALQKAGLDPETGVDMYLLKLAKAAG-KPV- 169
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603 189 tvldHKIADPRQALKEFRAGGMND-IECFRRILVTVERDLPTMVERANAWSVGDLEVLRQLPHQDrqaacmsavassgaa 267
Cdd:COG3735 170 ----VGLETVEEQLALLDSLPEEEqAEMLRETLDELEKGEAQLETLVDAWRAGDLAALEALLRED--------------- 230
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 84368603 268 kTRGIDDLERRMRD----HWLSIATAALQRNRSTFAVLSISRLTAPDGYLARLQVPGYEVEAP 326
Cdd:COG3735 231 -MAAYPEFYEALLDdrnrNWAPRIEALLKEPGTVFVAVGALHLPGEDGVLALLRARGYTVERV 292
TraB_PrgY_gumN pfam01963
TraB/PrgY/gumN family; This entry includes Tiki1/2 from humans, TraB/PrgY from the gut flora ...
41-325 5.44e-29

TraB/PrgY/gumN family; This entry includes Tiki1/2 from humans, TraB/PrgY from the gut flora Enterococcusfaecalis and gumN from the plant pathogen Xanthomonas. Tiki1 is homologous to TraB/PrgY. They have a pair of widely spaced GX2H motifs and a conserved glutamate. From the structural study, this group of proteins have been identified as an ancient metalloprotease clan with a common protein architecture (cobbled from the folds of the EreA/ChaN/PMT group) that mediates proteolytic activities. Tiki1 is a membrane-associated protease that inhibits Wnt via the cleavage of its amino terminus, diminishing Wnt's binding to receptors. TraB/PrgY is an inhibitor peptide that may act as a protease to inactivate the mating pheromone.


Pssm-ID: 426534  Cd Length: 262  Bit Score: 112.06  E-value: 5.44e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603    41 LWKVSKGEHVLWILGTQSPLRKRLQWQSTEVETSIGQSQQVlmapsiALDVGMGVFGRLTLLPSAMKAMKNEDGRELREV 120
Cdd:pfam01963   2 LWKISKGGTTVYLLGTIHVLPPSVYPLPPAIEEALEAADTV------VVELDLSRYTDPATQAALPKLGLLPDGKTLSDL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603   121 LPPDLYARWSVAKARYLGSDQGVERKRPMLAAGELYQAAL--KRAGLTRAPVIwSVVERAAKRAGIkptPTVLDHKIADP 198
Cdd:pfam01963  76 LSPELYARLQKALAKRGLPLAALDRMKPWLAALLLSLAELakQKAGLDPDLVD-RYLAKTAKRAGK---PVGGLETVEEQ 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603   199 RQALKEFRAGgmnDIECFRRILVTVERDLPTMVERANAWSVGDLEVLRQLPHQDRQAACMsavassgaaktrgIDDLERR 278
Cdd:pfam01963 152 LALLSLPDEE---QLEMLEETLDELEKGEDLLETLVEAWAEGDLEALELEAELKEAYPEL-------------YEVLLDE 215
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 84368603   279 MRDHWLSIATAALQRNRSTFAVLSISRLTAPDGYLARLQVPGYEVEA 325
Cdd:pfam01963 216 RNRYWAEKIEALLKEGGTVFVAVGAGHLPGEDGVLALLRKKGYTVER 262
Tiki_TraB-like cd14787
diverse proteins related to the Tiki and TraB protease domains; The extracellular domain of ...
51-146 1.10e-16

diverse proteins related to the Tiki and TraB protease domains; The extracellular domain of Tiki family proteins shares homology with bacterial TraB/PrgY proteins which are known for their roles in the inhibition of mating pheromones. Tiki and TraB/PrgY proteins share limited sequence identity, but their predicted secondary structures reveal that several catalytic residues are anchored in a similar manner, consistent with a common evolutionary origin. Tiki domains are related to the erythromycin esterase, gumN plant pathogens, RtxA toxins, and Campylobacter Jejuni heme-binding, ChaN-like proteins. Tiki is a membrane-associated metalloprotease (MEROPS family M96) that inhibits Wnt via the cleavage of its amino terminus, diminishing Wnt's binding to receptors. Wnt is essential in animal development and homeostasis. In Xenopus, Tiki is critical in head development. In human cells, Tiki inhibits Wnt-signaling, which is important in embryogenesis, homeostasis, and regeneration. Deregulation of Wnt contributes to birth defects, cancer and various diseases. TraB/PrgY protein has been identified in gut bacterium Enterococcus faecalis, but its function has not been well characterized. Plasmid-borne TraB has been implicated in the regulation of pheromone sensitivity and specificity. Based on homology to Tiki activity, it has been proposed that TraB acts as a metalloprotease in the inactivation of mating pheromone. Pasteurella multicida toxin has structural and sequence similarity to the Tiki/TraB family of proteases. However, unlike related multidomain toxins in this family, they do not exhibit conservation of the typical active site residues.


Pssm-ID: 350612  Cd Length: 127  Bit Score: 75.19  E-value: 1.10e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603  51 LWILGTQSPLRKRLQWQSTEVETSIGQ-SQQVLMAPSIALDVGMGVFGRLTLLPSAMKAMKNEDGRELREVLPPDLYARW 129
Cdd:cd14787   1 GVLLGTSHKSPKVKDFQADNVKELIGQgSTIVALEDLLTVQAELSQFLKGSKMPKALEAMLFNLTKVDYDVLFRDLLKSA 80
                        90
                ....*....|....*..
gi 84368603 130 SVAKARYLGSDQGVERK 146
Cdd:cd14787  81 KDNKARYNIRDRGIDHS 97
Tiki cd14789
Tiki homology domain antagonizes Wnt function via cleavage of amino-terminal residues; Tiki is ...
41-323 9.80e-13

Tiki homology domain antagonizes Wnt function via cleavage of amino-terminal residues; Tiki is a membrane-associated metalloprotease that inhibits Wnt via the cleavage of its amino terminus, diminishing Wnt's binding to receptors. Wnt is essential in animal development and homeostasis. In xenopus, tiki is critical in head development. In human cells, TIKI inhibits Wnt-signaling, which is important in embryogenesis, homeostasis, and regeneration. Deregulation of WNT contributes to birth defects, cancer and various diseases. TIKI homology domains are part of the TraB family and are related to the Erythromycin esterase, GumN plant pathogens, RtxA toxins, and Campylobacter Jejuni heme-binding, Chan-like proteins. TraB/PrgY are identified in gut bacterium Enterococcus faecalis, but its function has not been well characterized. Plasmid-borne, TraB has been implicated in the regulation of pheromone sensitivity and specificity. Based on homology to TIKI activity, it has been proposed that TraB acts as a metalloprotease in the inactivation of mating pheromone. The TIKI/TraB family has 2 conserved GxxH motifs and conserved glutamate and arginine residues that may be catalytic.


Pssm-ID: 350614  Cd Length: 259  Bit Score: 66.94  E-value: 9.80e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603  41 LWKVSKGEHVLWILGTQSPLRKRLQWQSTEVETSIGQSQQVLM-APSIALDvgmgvfgrlTLLPSAMKAMKNEDGRELRE 119
Cdd:cd14789   1 LWKISKGGLTSYLFGTIHVGDPDVYPLPPAVEQALAASDALVLeLDLTDPA---------ALAALQAAMALPPDGKTLKD 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603 120 VLPPDLYARWSVAKARYLGSDQGVERKRPMLAAGELYQAALKRAGLTRAPVIWSVVERAAKRAGiKPTptvldHKIADPR 199
Cdd:cd14789  72 LLSPEDYARLKAALAELGLPLAALDKLKPWLLALTLSQLQLQKLGYDPEYGVDLYLAQRAKAAG-KPV-----LGLETVE 145
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84368603 200 QALKEFRAGGMNDIECF-RRILVTVERDLPTMVERANAWSVGDLEVLRQLPHQDRQAAcmsavassgaaktrgIDDLERR 278
Cdd:cd14789 146 EQLDLLDSLPEEEQLALlRSTLDELEEAEAELETLIEAWKAGDLDALEELLDESMKED---------------DPELYER 210
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*....
gi 84368603 279 M---RDH-WLSIATAALQRNRSTFAVLSISRLTAPDGYLARLQVPGYEV 323
Cdd:cd14789 211 LlvdRNRnWAPKIEALLKKGGTVFVAVGAGHLVGEDGLLALLRKKGYTV 259
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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