NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|84366541|dbj|BAE67699|]
View 

hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018]

Protein Classification

phage N-6-adenine-methyltransferase( domain architecture ID 1903956)

phage N-6-adenine-methyltransferase utilizes the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor to catalyze the methylation of adenine in DNA

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Dam super family cl42425
DNA-adenine methylase [Replication, recombination and repair];
2-80 1.81e-16

DNA-adenine methylase [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG0338:

Pssm-ID: 440107  Cd Length: 265  Bit Score: 71.38  E-value: 1.81e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84366541   2 FYLDPPYWQTE------GYGVE-FPWEQYERLASMVRTL-QGKAVISINDHPDIRRVFACLDLVPLQLGYTIGSPGDRER 73
Cdd:COG0338 178 VYLDPPYYPLSrtslftSYGKGgFTDEDHERLADLLKELrGGKVLLSNSDTPLIRELYKGFRIEEVEAKRSINSNGSKRG 257


                ....*..
gi 84366541  74 MFGELII 80
Cdd:COG0338 258 KVKELLI 264
 
Name Accession Description Interval E-value
Dam COG0338
DNA-adenine methylase [Replication, recombination and repair];
2-80 1.81e-16

DNA-adenine methylase [Replication, recombination and repair];


Pssm-ID: 440107  Cd Length: 265  Bit Score: 71.38  E-value: 1.81e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84366541   2 FYLDPPYWQTE------GYGVE-FPWEQYERLASMVRTL-QGKAVISINDHPDIRRVFACLDLVPLQLGYTIGSPGDRER 73
Cdd:COG0338 178 VYLDPPYYPLSrtslftSYGKGgFTDEDHERLADLLKELrGGKVLLSNSDTPLIRELYKGFRIEEVEAKRSINSNGSKRG 257


                ....*..
gi 84366541  74 MFGELII 80
Cdd:COG0338 258 KVKELLI 264
 
Name Accession Description Interval E-value
Dam COG0338
DNA-adenine methylase [Replication, recombination and repair];
2-80 1.81e-16

DNA-adenine methylase [Replication, recombination and repair];


Pssm-ID: 440107  Cd Length: 265  Bit Score: 71.38  E-value: 1.81e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84366541   2 FYLDPPYWQTE------GYGVE-FPWEQYERLASMVRTL-QGKAVISINDHPDIRRVFACLDLVPLQLGYTIGSPGDRER 73
Cdd:COG0338 178 VYLDPPYYPLSrtslftSYGKGgFTDEDHERLADLLKELrGGKVLLSNSDTPLIRELYKGFRIEEVEAKRSINSNGSKRG 257


                ....*..
gi 84366541  74 MFGELII 80
Cdd:COG0338 258 KVKELLI 264
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH