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Conserved domains on  [gi|75992479|dbj|BAE45129|]
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Numb-like [Rattus norvegicus]

Protein Classification

numb family protein( domain architecture ID 10101010)

numb family protein similar to protein numb, a membrane associated adaptor protein that is required in determination of cell fate during sensory organ formation in embryos

Gene Ontology:  GO:0050767|GO:0005515
PubMed:  15567406|8987385|10610414

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTB_Numb cd01268
Numb Phosphotyrosine-binding (PTB) domain; Numb is a membrane associated adaptor protein which ...
 64-198 2.22e-101

Numb Phosphotyrosine-binding (PTB) domain; Numb is a membrane associated adaptor protein which plays critical roles in cell fate determination. Numb proteins are involved in control of asymmetric cell division and cell fate choice, endocytosis, cell adhesion, cell migration, ubiquitination of specific substrates and a number of signaling pathways (Notch, Hedgehog, p53). Mutations in Numb plays a critical role in disease (cancer). Numb has an N-terminal PTB domain and a C-terminal NumbF domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.


:

Pssm-ID: 241298  Cd Length: 135  Bit Score: 303.84  E-value: 2.22e-101
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  64 HQWQADEDAVRKGTCSFPVRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQTIEK 143
Cdd:cd01268   1 HQWQADEEAVRSGTCSFPVKYLGCVEVGESRGMQVCEEALKKLKASRKKPVRAVLWVSGDGLRVVDEKTKGLIVDQTIEK 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 75992479 144 VSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCAFAACLER 198
Cdd:cd01268  81 VSFCAPDRNHERAFSYICRDGTTRRWMCHCFLAVKDSGERLSHAVGCAFAACLER 135
NumbF pfam06311
NUMB domain; This presumed domain is found in the Numb family of proteins adjacent to the PTB ...
 286-370 1.04e-39

NUMB domain; This presumed domain is found in the Numb family of proteins adjacent to the PTB domain..


:

Pssm-ID: 461874  Cd Length: 95  Bit Score: 140.30  E-value: 1.04e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   286 AAAIPRRHAPLEQLVRQGSFRGFPALSQKNSPFKRQLSLRLNELPSTLQRRTDF-----------QVKGTVPEMEPPGTg 354
Cdd:pfam06311   1 PFAIERPHAPLSMLQRQGSFRGFPQLSQKNSPFKRQLSLRLNELPSNLQRKRSFslepsdpplktPVSNPIPEISPSSE- 79

                          90
                  ....*....|....*.
gi 75992479   355 DSDGISALCTQISSSF 370
Cdd:pfam06311  80 QADSISAMCQQISSGL 95
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 262-603 1.09e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   262 SPTPATTSPGEKGEAGTPVAAGTTAAAIPRRHAPLEQLVRQGSfrgfpaLSQKNSPFKRQlslRLNELPSTLQRRTDF-Q 340
Cdd:PHA03247 2630 SPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR------AAQASSPPQRP---RRRAARPTVGSLTSLaD 2700

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   341 VKGTVPEMEPPGTGDSDGISALCTQISSSFASAGAPV-PGPPSATTGTSAWGEPSVPAATAFQPGHKR---------TPS 410
Cdd:PHA03247 2701 PPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAaPAPPAVPAGPATPGGPARPARPPTTAGPPApappaapaaGPP 2780

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   411 EAERWLEEVSQVAKAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQATSVPPMPTMAPTLQPfsAPVGPFDTAAAQVAVFLP 490
Cdd:PHA03247 2781 RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPP--PPPGPPPPSLPLGGSVAP 2858

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   491 --PTHMQPPFVPAYPGLGYPPMPRVPVVGITPSQMVANAFCSAAQLQPQPATLLGKAGAFPPPTAPSAPGGQARPRPNGa 568
Cdd:PHA03247 2859 ggDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP- 2937

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 75992479   569 pwppepapAPAPELDPFEAQWAALEGKPAVEKPSN 603
Cdd:PHA03247 2938 --------RPQPPLAPTTDPAGAGEPSGAVPQPWL 2964
 
Name Accession Description Interval E-value
PTB_Numb cd01268
Numb Phosphotyrosine-binding (PTB) domain; Numb is a membrane associated adaptor protein which ...
 64-198 2.22e-101

Numb Phosphotyrosine-binding (PTB) domain; Numb is a membrane associated adaptor protein which plays critical roles in cell fate determination. Numb proteins are involved in control of asymmetric cell division and cell fate choice, endocytosis, cell adhesion, cell migration, ubiquitination of specific substrates and a number of signaling pathways (Notch, Hedgehog, p53). Mutations in Numb plays a critical role in disease (cancer). Numb has an N-terminal PTB domain and a C-terminal NumbF domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.


Pssm-ID: 241298  Cd Length: 135  Bit Score: 303.84  E-value: 2.22e-101
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  64 HQWQADEDAVRKGTCSFPVRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQTIEK 143
Cdd:cd01268   1 HQWQADEEAVRSGTCSFPVKYLGCVEVGESRGMQVCEEALKKLKASRKKPVRAVLWVSGDGLRVVDEKTKGLIVDQTIEK 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 75992479 144 VSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCAFAACLER 198
Cdd:cd01268  81 VSFCAPDRNHERAFSYICRDGTTRRWMCHCFLAVKDSGERLSHAVGCAFAACLER 135
NumbF pfam06311
NUMB domain; This presumed domain is found in the Numb family of proteins adjacent to the PTB ...
 286-370 1.04e-39

NUMB domain; This presumed domain is found in the Numb family of proteins adjacent to the PTB domain..


Pssm-ID: 461874  Cd Length: 95  Bit Score: 140.30  E-value: 1.04e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   286 AAAIPRRHAPLEQLVRQGSFRGFPALSQKNSPFKRQLSLRLNELPSTLQRRTDF-----------QVKGTVPEMEPPGTg 354
Cdd:pfam06311   1 PFAIERPHAPLSMLQRQGSFRGFPQLSQKNSPFKRQLSLRLNELPSNLQRKRSFslepsdpplktPVSNPIPEISPSSE- 79

                          90
                  ....*....|....*.
gi 75992479   355 DSDGISALCTQISSSF 370
Cdd:pfam06311  80 QADSISAMCQQISSGL 95
PID pfam00640
Phosphotyrosine interaction domain (PTB/PID);
80-195 3.25e-35

Phosphotyrosine interaction domain (PTB/PID);


Pssm-ID: 395515  Cd Length: 133  Bit Score: 129.41  E-value: 3.25e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479    80 FPVRYLGHVEVEESR------GMHVCEDAVKKLKAMGRKS-----------VKSVLWVSADGLRVVDDKTKDLLVDQTIE 142
Cdd:pfam00640   1 FAVRYLGSVEVPEERapdkntRMQQAREAIRRVKAAKINKirglsgetgpgTKVDLFISTDGLKLLNPDTQELIHDHPLV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 75992479   143 KVSFCAP-DRNLDKAFSYICRDGTTRRWICHCFLAlKDSGERLSHAVGCAFAAC 195
Cdd:pfam00640  81 SISFCADgDPDLMRYFAYIARDKATNKFACHVFES-EDGAQDIAQSIGQAFALA 133
PTB smart00462
Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain; PTB/PI domain ...
 77-205 6.18e-34

Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain; PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.


Pssm-ID: 214675  Cd Length: 134  Bit Score: 125.89  E-value: 6.18e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479     77 TCSFPVRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVK----SVLWVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRN 152
Cdd:smart00462   3 GVSFRVKYLGSVEVPEARGLQVVQEAIRKLRAAQGSEKKepqkVILSISSRGVKLIDEDTKAVLHEHPLRRISFCAVGPD 82

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 75992479    153 LDKAFSYICRDGTTRRWICHCFLALKDSGErLSHAVGCAFAACLERKQRREKE 205
Cdd:smart00462  83 DLDVFGYIARDPGSSRFACHVFRCEKAAED-IALAIGQAFQLAYELKLKARSE 134
PHA03247 PHA03247
large tegument protein UL36; Provisional
 262-603 1.09e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   262 SPTPATTSPGEKGEAGTPVAAGTTAAAIPRRHAPLEQLVRQGSfrgfpaLSQKNSPFKRQlslRLNELPSTLQRRTDF-Q 340
Cdd:PHA03247 2630 SPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR------AAQASSPPQRP---RRRAARPTVGSLTSLaD 2700

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   341 VKGTVPEMEPPGTGDSDGISALCTQISSSFASAGAPV-PGPPSATTGTSAWGEPSVPAATAFQPGHKR---------TPS 410
Cdd:PHA03247 2701 PPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAaPAPPAVPAGPATPGGPARPARPPTTAGPPApappaapaaGPP 2780

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   411 EAERWLEEVSQVAKAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQATSVPPMPTMAPTLQPfsAPVGPFDTAAAQVAVFLP 490
Cdd:PHA03247 2781 RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPP--PPPGPPPPSLPLGGSVAP 2858

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   491 --PTHMQPPFVPAYPGLGYPPMPRVPVVGITPSQMVANAFCSAAQLQPQPATLLGKAGAFPPPTAPSAPGGQARPRPNGa 568
Cdd:PHA03247 2859 ggDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP- 2937

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 75992479   569 pwppepapAPAPELDPFEAQWAALEGKPAVEKPSN 603
Cdd:PHA03247 2938 --------RPQPPLAPTTDPAGAGEPSGAVPQPWL 2964
 
Name Accession Description Interval E-value
PTB_Numb cd01268
Numb Phosphotyrosine-binding (PTB) domain; Numb is a membrane associated adaptor protein which ...
 64-198 2.22e-101

Numb Phosphotyrosine-binding (PTB) domain; Numb is a membrane associated adaptor protein which plays critical roles in cell fate determination. Numb proteins are involved in control of asymmetric cell division and cell fate choice, endocytosis, cell adhesion, cell migration, ubiquitination of specific substrates and a number of signaling pathways (Notch, Hedgehog, p53). Mutations in Numb plays a critical role in disease (cancer). Numb has an N-terminal PTB domain and a C-terminal NumbF domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.


Pssm-ID: 241298  Cd Length: 135  Bit Score: 303.84  E-value: 2.22e-101
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  64 HQWQADEDAVRKGTCSFPVRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQTIEK 143
Cdd:cd01268   1 HQWQADEEAVRSGTCSFPVKYLGCVEVGESRGMQVCEEALKKLKASRKKPVRAVLWVSGDGLRVVDEKTKGLIVDQTIEK 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 75992479 144 VSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCAFAACLER 198
Cdd:cd01268  81 VSFCAPDRNHERAFSYICRDGTTRRWMCHCFLAVKDSGERLSHAVGCAFAACLER 135
NumbF pfam06311
NUMB domain; This presumed domain is found in the Numb family of proteins adjacent to the PTB ...
 286-370 1.04e-39

NUMB domain; This presumed domain is found in the Numb family of proteins adjacent to the PTB domain..


Pssm-ID: 461874  Cd Length: 95  Bit Score: 140.30  E-value: 1.04e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   286 AAAIPRRHAPLEQLVRQGSFRGFPALSQKNSPFKRQLSLRLNELPSTLQRRTDF-----------QVKGTVPEMEPPGTg 354
Cdd:pfam06311   1 PFAIERPHAPLSMLQRQGSFRGFPQLSQKNSPFKRQLSLRLNELPSNLQRKRSFslepsdpplktPVSNPIPEISPSSE- 79

                          90
                  ....*....|....*.
gi 75992479   355 DSDGISALCTQISSSF 370
Cdd:pfam06311  80 QADSISAMCQQISSGL 95
PID pfam00640
Phosphotyrosine interaction domain (PTB/PID);
80-195 3.25e-35

Phosphotyrosine interaction domain (PTB/PID);


Pssm-ID: 395515  Cd Length: 133  Bit Score: 129.41  E-value: 3.25e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479    80 FPVRYLGHVEVEESR------GMHVCEDAVKKLKAMGRKS-----------VKSVLWVSADGLRVVDDKTKDLLVDQTIE 142
Cdd:pfam00640   1 FAVRYLGSVEVPEERapdkntRMQQAREAIRRVKAAKINKirglsgetgpgTKVDLFISTDGLKLLNPDTQELIHDHPLV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 75992479   143 KVSFCAP-DRNLDKAFSYICRDGTTRRWICHCFLAlKDSGERLSHAVGCAFAAC 195
Cdd:pfam00640  81 SISFCADgDPDLMRYFAYIARDKATNKFACHVFES-EDGAQDIAQSIGQAFALA 133
PTB smart00462
Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain; PTB/PI domain ...
 77-205 6.18e-34

Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain; PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.


Pssm-ID: 214675  Cd Length: 134  Bit Score: 125.89  E-value: 6.18e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479     77 TCSFPVRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVK----SVLWVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRN 152
Cdd:smart00462   3 GVSFRVKYLGSVEVPEARGLQVVQEAIRKLRAAQGSEKKepqkVILSISSRGVKLIDEDTKAVLHEHPLRRISFCAVGPD 82

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 75992479    153 LDKAFSYICRDGTTRRWICHCFLALKDSGErLSHAVGCAFAACLERKQRREKE 205
Cdd:smart00462  83 DLDVFGYIARDPGSSRFACHVFRCEKAAED-IALAIGQAFQLAYELKLKARSE 134
PTB cd00934
Phosphotyrosine-binding (PTB) PH-like fold; PTB domains have a common PH-like fold and are ...
 78-192 4.88e-26

Phosphotyrosine-binding (PTB) PH-like fold; PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to bind peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains.


Pssm-ID: 269911  Cd Length: 120  Bit Score: 102.97  E-value: 4.88e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  78 CSFPVRYLGHVEVEESRGMHVCEDAVKKLKAM----GRKSVKSVLWVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRNL 153
Cdd:cd00934   1 ASFQVKYLGSVEVGSSRGVDVVEEALKALAAAlkssKRKPGPVLLEVSSKGVKLLDLDTKELLLRHPLHRISYCGRDPDN 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 75992479 154 DKAFSYICRDGTTRRWICHCFLALKDS-GERLSHAVGCAF 192
Cdd:cd00934  81 PNVFAFIAGEEGGSGFRCHVFQCEDEEeAEEILQAIGQAF 120
PTB_TK_HMTK cd13161
Tyrosine-specific kinase/HM-motif TK (TM/HMTK) Phosphotyrosine-binding (PTB) PH-like fold; TK ...
 80-197 1.14e-25

Tyrosine-specific kinase/HM-motif TK (TM/HMTK) Phosphotyrosine-binding (PTB) PH-like fold; TK kinases catalyzes the transfer of the terminal phosphate of ATP to a specific tyrosine residue on its target protein. TK kinases play significant roles in development and cell division. Tyrosine-protein kinases can be divided into two subfamilies: receptor tyrosine kinases, which have an intracellular tyrosine kinase domain, a transmembrane domain and an extracellular ligand-binding domain; and non-receptor (cytoplasmic) tyrosine kinases, which are soluble, cytoplasmic kinases. In HMTK the conserved His-Arg-Asp sequence within the catalytic loop is replaced by a His-Met sequence. TM/HMTK have are 2-3 N-terminal PTB domains. PTB domains in TKs are thought to function analogously to the membrane targeting (PH, myristoylation) and pTyr binding (SH2) domains of Src subgroup kinases. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.


Pssm-ID: 269983  Cd Length: 120  Bit Score: 101.94  E-value: 1.14e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  80 FPVRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFSY 159
Cdd:cd13161   4 FEAKYLGSVPVKEPKGNDVVMAAVKRLKDLKLKPKPVVLVVSSEGIRVVERLTGEVLTNVPIKDISFVTVDPKDKKLFAF 83

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 75992479 160 ICRDGTTRRWICHCFLaLKDSGERLSHAVGCAFAACLE 197
Cdd:cd13161  84 ISHDPRLGRITCHVFR-CKRGAQEICDTIAEAFKAAAE 120
PTB_CED-6 cd01273
Cell death protein 6 homolog (CED-6/GULP1) Phosphotyrosine-binding (PTB) domain; CED6 (also ...
 71-192 1.58e-20

Cell death protein 6 homolog (CED-6/GULP1) Phosphotyrosine-binding (PTB) domain; CED6 (also known as GULP1: engulfment adaptor PTB domain containing 1) is an adaptor protein involved in the specific recognition and engulfment of apoptotic cells. CED6 has been shown to interact with the cytoplasmic tail of another protein involved in the engulfment of apoptotic cells, CED1. CED6 has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.


Pssm-ID: 269971  Cd Length: 144  Bit Score: 88.10  E-value: 1.58e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  71 DAVRKGTCSFPVRYLGHVEVEESRGMHVCEDAVKKL-------KAMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQTIEK 143
Cdd:cd01273   5 EALIKGHVAYLVKFLGCTEVEQPKGTEVVKEAIRKLkfarqlkKSEGAKLPKVELQISIDGVKIQDPKTKVIMHQFPLHR 84

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 75992479 144 VSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKdSGERLSHAVGCAF 192
Cdd:cd01273  85 ISFCADDKTDKRIFSFIAKDSESEKHLCFVFDSEK-LAEEITLTIGQAF 132
PTB_LDLRAP-mammal-like cd13159
Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins ...
 79-192 2.00e-17

Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold; The null mutations in the LDL receptor adaptor protein 1 (LDLRAP1) gene, which serves as an adaptor for LDLR endocytosis in the liver, causes autosomal recessive hypercholesterolemia (ARH). LDLRAP1 contains a single PTB domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd contains mammals, insects, and sponges.


Pssm-ID: 269981  Cd Length: 123  Bit Score: 78.53  E-value: 2.00e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  79 SFPVRYLGHVEVEESRGMHVCEDAVKK----LKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRNLD 154
Cdd:cd13159   4 TFYLKYLGSTLVEKPKGEGATAEAVKTiiamAKASGKKLQKVTLTVSPKGIKVTDSATNETILEVSIYRISYCTADANHD 83

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 75992479 155 KAFSYICRDGTTRRWICHCFLALKDS-GERLSHAVGCAF 192
Cdd:cd13159  84 KVFAFIATNQDNEKLECHAFLCAKRKmAQAVTLTVAQAF 122
PTB_Dab cd01215
Disabled (Dab) Phosphotyrosine-binding domain; Dab is a cystosolic adaptor protein, which ...
 82-161 2.50e-13

Disabled (Dab) Phosphotyrosine-binding domain; Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.


Pssm-ID: 269926  Cd Length: 147  Bit Score: 67.66  E-value: 2.50e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  82 VRY----LGHVEVEESRGMHVCEDAVKKLK----AMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRNL 153
Cdd:cd01215  16 VRFkaklIGIDEVPAARGDKMCQDAMMKLKgavkAAGEHKQRIWLNISLEGIKILDEKTGALLHHHPVHKISFIARDTTD 95


                ....*...
gi 75992479 154 DKAFSYIC 161
Cdd:cd01215  96 NRAFGYVC 103
PTB_Anks cd01274
Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family ...
 65-178 1.45e-12

Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain; Both AIDA-1b (AbetaPP intracellular domain-associated protein 1b) and Odin (also known as ankyrin repeat and sterile alpha motif domain-containing 1A; ANKS1A) belong to the Anks protein family. Both of these family members interacts with the EphA8 receptor. Ank members consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain which is crucial for interaction with the juxtamembrane (JM) region of EphA8. PTB domains are classified into three groups, namely, phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains of which the Anks PTB is a member. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.


Pssm-ID: 269972  Cd Length: 146  Bit Score: 65.38  E-value: 1.45e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  65 QWQADEDAVRKGTCSFPVRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVKS---VLWVSADGLRVVDDKTKDLLVDQTI 141
Cdd:cd01274   2 QWRHSPEKLITGSVNYEAHYLGSTEIKELRGTESTKKAIQKLKKSTREMKKIptiILSISYKGVKFIDATTKNLICEHEI 81

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 75992479 142 EKVSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALK 178
Cdd:cd01274  82 RNISCACQDPEDLNTFAYITKDLKTDHHYCHVFCVLT 118
PTB pfam08416
Phosphotyrosine-binding domain; The phosphotyrosine-binding domain (PTB, also ...
 81-202 9.50e-08

Phosphotyrosine-binding domain; The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) in the protein tensin tends to be found at the C-terminus. Tensin is a multi-domain protein that binds to actin filaments and functions as a focal-adhesion molecule (focal adhesions are regions of plasma membrane through which cells attach to the extracellular matrix). Human tensin has actin-binding sites, an SH2 (pfam00017) domain and a region similar to the tumour suppressor PTEN. The PTB domain interacts with the cytoplasmic tails of beta integrin by binding to an NPXY motif.


Pssm-ID: 429984  Cd Length: 131  Bit Score: 51.19  E-value: 9.50e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479    81 PVRYLGHVEVEESRGMHVCEDAVKKLK---AMGRKSVKSVLW-VSADGLRVVDDKTKDLLVDQTIEKVSFCA---PDRNL 153
Cdd:pfam08416   3 RVEHLTTFELDSLTGLQAVEDAIRKLQlldAQGRVWTQEMLLqVSDQGITLTDNETKEELESYPLDSISHCQavlNDGRY 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 75992479   154 DKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCAFAACLERKQRR 202
Cdd:pfam08416  83 NSILALVCQEPGQSKPDVHLFQCDELGAELIAEDIESALSDVRLGKPKK 131
PHA03247 PHA03247
large tegument protein UL36; Provisional
 262-603 1.09e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   262 SPTPATTSPGEKGEAGTPVAAGTTAAAIPRRHAPLEQLVRQGSfrgfpaLSQKNSPFKRQlslRLNELPSTLQRRTDF-Q 340
Cdd:PHA03247 2630 SPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR------AAQASSPPQRP---RRRAARPTVGSLTSLaD 2700

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   341 VKGTVPEMEPPGTGDSDGISALCTQISSSFASAGAPV-PGPPSATTGTSAWGEPSVPAATAFQPGHKR---------TPS 410
Cdd:PHA03247 2701 PPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAaPAPPAVPAGPATPGGPARPARPPTTAGPPApappaapaaGPP 2780

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   411 EAERWLEEVSQVAKAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQATSVPPMPTMAPTLQPfsAPVGPFDTAAAQVAVFLP 490
Cdd:PHA03247 2781 RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPP--PPPGPPPPSLPLGGSVAP 2858

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479   491 --PTHMQPPFVPAYPGLGYPPMPRVPVVGITPSQMVANAFCSAAQLQPQPATLLGKAGAFPPPTAPSAPGGQARPRPNGa 568
Cdd:PHA03247 2859 ggDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP- 2937

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 75992479   569 pwppepapAPAPELDPFEAQWAALEGKPAVEKPSN 603
Cdd:PHA03247 2938 --------RPQPPLAPTTDPAGAGEPSGAVPQPWL 2964
PTB_LDLRAP_insect-like cd13160
Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in insects and similar proteins ...
 79-175 6.79e-05

Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in insects and similar proteins Phosphotyrosine-binding (PTB) PH-like fold; The null mutations in the LDL receptor adaptor protein 1 (LDLRAP1) gene, which serves as an adaptor for LDLR endocytosis in the liver, causes autosomal recessive hypercholesterolemia (ARH). LDLRAP1 contains a single PTB domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd contains insects, ticks, sea urchins, and nematodes.


Pssm-ID: 269982  Cd Length: 125  Bit Score: 42.71  E-value: 6.79e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  79 SFPVRYLGHVEVEESRGMHVCE----DAVKKLKAmgRKSVKSV-LWVSADGLRVVD-----DKTKDLLVdqTIEKVSFCA 148
Cdd:cd13160   2 VFTVKYLGRMPARGLWGIKHTRkplvDALKNLPK--GKTLPKTkLEVSSDGVKLEElrggfGSSKTVFF--PIHTISYGV 77

                        90       100       110
                ....*....|....*....|....*....|
gi 75992479 149 PDRNLDKAFSYICR-DGTTRR--WICHCFL 175
Cdd:cd13160  78 QDLVHTRVFSMIVVgEQDSSNhpFECHAFV 107
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
379-592 1.02e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.25  E-value: 1.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  379 GPPSATTGTSAWGEPSVPAATAFQPGHKRTPSEAerwleevsqvAKAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQATSV 458
Cdd:PRK12323 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAP----------AAAPAAAAAARAVAAAPARRSPAPEALAAARQASAR 442

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  459 PPMPTMAPTLQPFSAPVGPFDTAAAQ-----VAVFLPPTHMQPPFVPAYPGLGYPPMPRVP--VVGITPSQMVANAFCSA 531
Cdd:PRK12323 443 GPGGAPAPAPAPAAAPAAAARPAAAGprpvaAAAAAAPARAAPAAAPAPADDDPPPWEELPpeFASPAPAQPDAAPAGWV 522

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 75992479  532 AQLQPQPATLLGKAGAFPPPTAPSAPGGQARPRPNGAPWPPEPAPAPAPELDP-FEAQWAAL 592
Cdd:PRK12323 523 AESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDmFDGDWPAL 584
PTB_CAPON-like cd01270
Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein (CAPON) ...
 70-205 1.28e-04

Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein (CAPON) Phosphotyrosine-binding (PTB) domain; CAPON (also known as Nitric oxide synthase 1 adaptor protein, NOS1AP, encodes a cytosolic protein that binds to the signaling molecule, neuronal NOS (nNOS). It contains a N-terminal PTB domain that binds to the small monomeric G protein, Dexras1 and a C-terminal PDZ-binding domain that mediates interactions with nNOS. Included in this cd are C. elegan proteins dystrobrevin, DYB-1, which controls neurotransmitter release and muscle Ca(2+) transients by localizing BK channels and DYstrophin-like phenotype and CAPON related,DYC-1, which is functionally related to dystrophin homolog, DYS-1. Mutations in the dystrophin gene causes Duchenne muscular dystrophy. DYS-1 shares sequence similarity, including key motifs, with their mammalian counterparts. These CAPON-like proteins all have a single PTB domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.


Pssm-ID: 269968  Cd Length: 179  Bit Score: 43.04  E-value: 1.28e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  70 EDAVRKGTCsFPVRYLGHVEVEE--SRGMHVCedAVKKL----KAMGRKSVKSVLWVSADGLRVV-----------DDKT 132
Cdd:cd01270  22 EEAFQHGIT-FQAKYIGSLEVPRpsSRVEIVA--AMRRIryefKAKNIKKKKVTITVSVDGVKVVlrkkkkkkgwtWDES 98

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 75992479 133 KDLLVDQTIEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCFLA-LKDSGERLSHAVGCAFAACLERKQRREKE 205
Cdd:cd01270  99 KLLLMQHPIYRIFYVSHDSQDLKIFSYIARDGSSNVFKCNVFKSkKKSQAMRIVRTIGQAFEVCHKLSLQHMQG 172
PTB1_Fe65 cd01272
Fe65 N-terminal Phosphotyrosine-binding (PTB) domain; The neuronal adaptor protein Fe65 is ...
 79-174 1.39e-04

Fe65 N-terminal Phosphotyrosine-binding (PTB) domain; The neuronal adaptor protein Fe65 is involved in brain development, Alzheimer disease amyloid precursor protein (APP) signaling, and proteolytic processing of APP. It contains three protein-protein interaction domains, one WW domain, and a unique tandem array of phosphotyrosine-binding (PTB) domains. The N-terminal PTB domain was shown to interact with a variety of proteins, including the low density lipoprotein receptor-related protein (LRP-1), the ApoEr2 receptor, and the histone acetyltransferase Tip60. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.


Pssm-ID: 269970  Cd Length: 138  Bit Score: 42.29  E-value: 1.39e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  79 SFPVRYLGHVEVEE--------SRGMHVCedaVKKLkAMGRKSVKSVLWVSADG-----------LRVVDDKTKDLLVDQ 139
Cdd:cd01272   3 RFAVRSLGWVEMAEedltpgksSVAVNNC---IRQL-SYGRNDIRDTVGRWGEGkdmlmvldddtLKLVDPDDRSVLHSQ 78

                        90       100       110
                ....*....|....*....|....*....|....*
gi 75992479 140 TIEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCF 174
Cdd:cd01272  79 PIHSIRVWGVGRDNGRDFAYVARDKDTRVLKCHVF 113
PTB_APPL cd13158
Adaptor protein containing PH domain, PTB domain, and Leucine zipper motif (APPL; also called ...
 80-191 1.46e-04

Adaptor protein containing PH domain, PTB domain, and Leucine zipper motif (APPL; also called DCC-interacting protein (DIP)-13alpha) Phosphotyrosine-binding (PTB) domain; APPL interacts with oncoprotein serine/threonine kinase AKT2, tumor suppressor protein DCC (deleted in colorectal cancer), Rab5, GIPC (GAIP-interacting protein, C terminus), human follicle-stimulating hormone receptor (FSHR), and the adiponectin receptors AdipoR1 and AdipoR2. There are two isoforms of human APPL: APPL1 and APPL2, which share about 50% sequence identity. APPL has a BAR and a PH domain near its N terminus, and the two domains are thought to function as a unit (BAR-PH domain). C-terminal to this is a PTB domain. Lipid binding assays show that the BAR, PH, and PTB domains can bind phospholipids. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains.


Pssm-ID: 269980  Cd Length: 135  Bit Score: 41.95  E-value: 1.46e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  80 FPVRYLGHVEVEESRGMHVCEDAVKKLKAmGR------KSVKSVLWVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRNL 153
Cdd:cd13158  13 FIVRFLGSMEVKSDRTSEVIYEAMRQVLA-ARaihnifRMTESHLLVTSDCLRLIDPQTQVTRARFPLADVVQFAAHQEN 91

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 75992479 154 DKAFSYICR----DGTTRRWICHCFLAlKDSGERLSHAVGCA 191
Cdd:cd13158  92 KRLFGFVVRtpegDGEEPSFSCYVFES-NTEGEKICDAIALA 132
PTB_Shc cd01209
Shc-like phosphotyrosine-binding (PTB) domain; Shc is a substrate for receptor tyrosine ...
 66-174 1.95e-03

Shc-like phosphotyrosine-binding (PTB) domain; Shc is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. Shc contains an PTB domain followed by an SH2 domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Shc-like subgroup.


Pssm-ID: 269920  Cd Length: 170  Bit Score: 39.50  E-value: 1.95e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  66 WQADEDAVRKGTCSFPVRYLGHVEVEES-RGM--------------HVCEdAVKKLKAMGRKSVKSVLW----------- 119
Cdd:cd01209   3 WLHPDQLGMGPGVSYPVRYVGCIEVLQSmRSLdfntrtqvtreainRVCE-AVGGAKGAKRKRKSKALSsilgksnlqfa 81

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75992479 120 -------VSADGLRVVDDKTKDLLVDQTIEKVSFCAP-DRNLDKAFSYICRDGTTRRwICHCF 174
Cdd:cd01209  82 gmnisltISTDGLNLVTPDTGQIIANHHMQSISFASGgDPDTYDYVAYVAKDPVNQR-ACHVL 143
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
458-606 2.96e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 2.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  458 VPPMPTMAPTLQPFSAPVGPFDTAAAQVAVFLPPTHMQPPFVPAYPGLGYPPMPRVPVVGITPSQMVAnafcSAAQLQPQ 537
Cdd:PRK12323 390 AAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAA----PAAAARPA 465

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 75992479  538 PATLLGKAGAFPPPTAPSAPGGQARPRPNGAPW----PPEPAPAPAPELDPFEAQW-AALEGKPAVEKPSNPFS 606
Cdd:PRK12323 466 AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPweelPPEFASPAPAQPDAAPAGWvAESIPDPATADPDDAFE 539
PTB_tensin-related cd13157
Tensin-related Phosphotyrosine-binding (PTB) domain; Tensin plays critical roles in renal ...
 79-174 4.05e-03

Tensin-related Phosphotyrosine-binding (PTB) domain; Tensin plays critical roles in renal function, muscle regeneration, and cell migration. It binds to actin filaments and interacts with the cytoplasmic tails of beta-integrin via its PTB domain, allowing tensin to link actin filaments to integrin receptors. Tensin functions as a platform for assembly and disassembly of signaling complexes at focal adhesions by recruiting tyrosine-phosphorylated signaling molecules, and also by providing interaction sites for other proteins. In addition to its PTB domain, it contains a C-terminal SH2 domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains.


Pssm-ID: 269979  Cd Length: 129  Bit Score: 37.75  E-value: 4.05e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  79 SFPVRYLGHVEVEESRGMHVCEDAVKKLKAM---GRKSVKSVLWVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRNlDK 155
Cdd:cd13157   3 SRNAQYIGSFPVSGLDVADRADSVRKQLESLkesGSRGRPVILSVSLSGIKICSEDGKVVLMAHALRRVSYSTCRPA-HA 81

                        90       100
                ....*....|....*....|.
gi 75992479 156 AFSYICRD--GTTRRWICHCF 174
Cdd:cd13157  82 QFAFVARNpgGPTNRQYCHVF 102
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
367-566 6.83e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.45  E-value: 6.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  367 SSSFASAGAPVPGPPSATTGTSAWGEPSVPAATAFQPGHKRTPSEAERWLEEVSQVAKAQQQQQQQQQQQQQQQQQQQQQ 446
Cdd:PRK07003 388 AAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERD 467

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75992479  447 QQQQQQQQATSVPPMPTMAPT-LQPFSAPVGPFDTAAAQVAVFLPPTHMQPPFVPAYPGlgyPPMPRVPVVGITPSQMVA 525
Cdd:PRK07003 468 AQPPADSGSASAPASDAPPDAaFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAA---PPAPEARPPTPAAAAPAA 544

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 75992479  526 NAFCSAAQLQPQPATLL--------GKAGAFPPPTAPSAPGGQARPRPN 566
Cdd:PRK07003 545 RAGGAAAALDVLRNAGMrvssdrgaRAAAAAKPAAAPAAAPKPAAPRVA 593
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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