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Conserved domains on  [gi|42407912|dbj|BAD09052|]
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hypothetical protein [Oryza sativa Japonica Group]

Protein Classification

CCT domain-containing protein( domain architecture ID 10533202)

CCT (CONSTANS, CO-like, and TOC1) domain-containing protein similar to Arabidopsis thaliana chloroplast import apparatus 2 (CIA2) that is involved in general chloroplast protein import pathway regulation, including protein import and protein translation efficiencies

Gene Ontology:  GO:0005515

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CCT pfam06203
CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino ...
 255-298 4.49e-13

CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localization signal within the second half of the CCT motif. Toc1 mutants have been identified in this region.


:

Pssm-ID: 461849  Cd Length: 44  Bit Score: 62.52  E-value: 4.49e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 42407912   255 RAEKVRRYKEKRQGRLFAKRIRYEVRRLNAVKRPRLKVTNLSQP 298
Cdd:pfam06203   1 REEALLRYREKRKTRKFDKKIRYESRKALADKRPRVKGRFVKAD 44
 
Name Accession Description Interval E-value
CCT pfam06203
CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino ...
 255-298 4.49e-13

CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localization signal within the second half of the CCT motif. Toc1 mutants have been identified in this region.


Pssm-ID: 461849  Cd Length: 44  Bit Score: 62.52  E-value: 4.49e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 42407912   255 RAEKVRRYKEKRQGRLFAKRIRYEVRRLNAVKRPRLKVTNLSQP 298
Cdd:pfam06203   1 REEALLRYREKRKTRKFDKKIRYESRKALADKRPRVKGRFVKAD 44
 
Name Accession Description Interval E-value
CCT pfam06203
CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino ...
 255-298 4.49e-13

CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localization signal within the second half of the CCT motif. Toc1 mutants have been identified in this region.


Pssm-ID: 461849  Cd Length: 44  Bit Score: 62.52  E-value: 4.49e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 42407912   255 RAEKVRRYKEKRQGRLFAKRIRYEVRRLNAVKRPRLKVTNLSQP 298
Cdd:pfam06203   1 REEALLRYREKRKTRKFDKKIRYESRKALADKRPRVKGRFVKAD 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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