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Conserved domains on  [gi|26343843|dbj|BAC35578|]
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unnamed protein product [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Neural_ProG_Cyt super family cl05864
Neural chondroitin sulphate proteoglycan cytoplasmic domain; This family represents the ...
 222-288 6.74e-41

Neural chondroitin sulphate proteoglycan cytoplasmic domain; This family represents the C-terminal cytoplasmic domain of vertebrate neural chondroitin sulphate proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis. This domain contains a number of potential sites of phosphorylation by protein kinase C.


The actual alignment was detected with superfamily member pfam06567:

Pssm-ID: 461949  Cd Length: 120  Bit Score: 139.50  E-value: 6.74e-41
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 26343843   222 LYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIAEGSHPNVRKFCDTPRVsSPHARALAHYDNIVCQ 288
Cdd:pfam06567   1 LHVLKTENTKLRKTSKYRPPSEQHNDNFSLSTIAEGSHPNVRKLCDTPTN-LPHARALAYYDNIVCQ 66
Chon_Sulph_att super family cl25803
Chondroitin sulphate attachment domain; This family represents the chondroitin sulphate ...
 1-51 2.53e-34

Chondroitin sulphate attachment domain; This family represents the chondroitin sulphate attachment domain of vertebrate neural transmembrane proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis. This domain contains several potential sites of chondroitin sulphate attachment, as well as potential sites of N-linked glycosylation.


The actual alignment was detected with superfamily member pfam06566:

Pssm-ID: 368978 [Multi-domain]  Cd Length: 249  Bit Score: 126.20  E-value: 2.53e-34
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 26343843     1 MGSFPGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDL 51
Cdd:pfam06566 197 LGSFPGSPGTSEHHPDTGGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDL 247
 
Name Accession Description Interval E-value
Neural_ProG_Cyt pfam06567
Neural chondroitin sulphate proteoglycan cytoplasmic domain; This family represents the ...
 222-288 6.74e-41

Neural chondroitin sulphate proteoglycan cytoplasmic domain; This family represents the C-terminal cytoplasmic domain of vertebrate neural chondroitin sulphate proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis. This domain contains a number of potential sites of phosphorylation by protein kinase C.


Pssm-ID: 461949  Cd Length: 120  Bit Score: 139.50  E-value: 6.74e-41
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 26343843   222 LYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIAEGSHPNVRKFCDTPRVsSPHARALAHYDNIVCQ 288
Cdd:pfam06567   1 LHVLKTENTKLRKTSKYRPPSEQHNDNFSLSTIAEGSHPNVRKLCDTPTN-LPHARALAYYDNIVCQ 66
Chon_Sulph_att pfam06566
Chondroitin sulphate attachment domain; This family represents the chondroitin sulphate ...
 1-51 2.53e-34

Chondroitin sulphate attachment domain; This family represents the chondroitin sulphate attachment domain of vertebrate neural transmembrane proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis. This domain contains several potential sites of chondroitin sulphate attachment, as well as potential sites of N-linked glycosylation.


Pssm-ID: 368978 [Multi-domain]  Cd Length: 249  Bit Score: 126.20  E-value: 2.53e-34
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 26343843     1 MGSFPGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDL 51
Cdd:pfam06566 197 LGSFPGSPGTSEHHPDTGGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDL 247
 
Name Accession Description Interval E-value
Neural_ProG_Cyt pfam06567
Neural chondroitin sulphate proteoglycan cytoplasmic domain; This family represents the ...
 222-288 6.74e-41

Neural chondroitin sulphate proteoglycan cytoplasmic domain; This family represents the C-terminal cytoplasmic domain of vertebrate neural chondroitin sulphate proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis. This domain contains a number of potential sites of phosphorylation by protein kinase C.


Pssm-ID: 461949  Cd Length: 120  Bit Score: 139.50  E-value: 6.74e-41
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 26343843   222 LYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIAEGSHPNVRKFCDTPRVsSPHARALAHYDNIVCQ 288
Cdd:pfam06567   1 LHVLKTENTKLRKTSKYRPPSEQHNDNFSLSTIAEGSHPNVRKLCDTPTN-LPHARALAYYDNIVCQ 66
Chon_Sulph_att pfam06566
Chondroitin sulphate attachment domain; This family represents the chondroitin sulphate ...
 1-51 2.53e-34

Chondroitin sulphate attachment domain; This family represents the chondroitin sulphate attachment domain of vertebrate neural transmembrane proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis. This domain contains several potential sites of chondroitin sulphate attachment, as well as potential sites of N-linked glycosylation.


Pssm-ID: 368978 [Multi-domain]  Cd Length: 249  Bit Score: 126.20  E-value: 2.53e-34
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 26343843     1 MGSFPGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDL 51
Cdd:pfam06566 197 LGSFPGSPGTSEHHPDTGGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDL 247
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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