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Conserved domains on  [gi|22163992|dbj|BAC07287|]
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nitrogenase, partial [Rhodopseudomonas sp. HMD88]

Protein Classification

P-loop NTPase family protein( domain architecture ID 1562424)

P-loop NTPase (nucleoside triphosphate hydrolase) family protein contains two conserved sequence signatures, the Walker A motif (the P-loop proper) and Walker B motif which bind, respectively, the beta and gamma phosphate moieties of the bound nucleotide (typically ATP or GTP), and a Mg(2+) cation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NifH/CfbC super family cl43394
Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport ...
 1-154 1.96e-109

Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport and metabolism, Inorganic ion transport and metabolism];


The actual alignment was detected with superfamily member COG1348:

Pssm-ID: 440959  Cd Length: 276  Bit Score: 312.11  E-value: 1.96e-109
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992   1 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGsvEDLELEDVMKVGYKGI 80
Cdd:COG1348   4 QIAIYGKGGIGKSTTSSNLSAALAEMGKKVMQIGCDPKADSTRLLLGGKRIPTVLDTLREKG--EDVELEDIVFEGFGGV 81

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22163992  81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAYE-DVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:COG1348  82 KCVEAGGPEPGVGCAGRGIITAIELLEELGAYEeDLDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGEFMAL 156
 
Name Accession Description Interval E-value
NifH/CfbC COG1348
Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport ...
 1-154 1.96e-109

Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440959  Cd Length: 276  Bit Score: 312.11  E-value: 1.96e-109
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992   1 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGsvEDLELEDVMKVGYKGI 80
Cdd:COG1348   4 QIAIYGKGGIGKSTTSSNLSAALAEMGKKVMQIGCDPKADSTRLLLGGKRIPTVLDTLREKG--EDVELEDIVFEGFGGV 81

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22163992  81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAYE-DVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:COG1348  82 KCVEAGGPEPGVGCAGRGIITAIELLEELGAYEeDLDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGEFMAL 156
NifH cd02040
nitrogenase component II NifH; NifH gene encodes component II (iron protein) of nitrogenase. ...
 1-154 1.73e-101

nitrogenase component II NifH; NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.


Pssm-ID: 349759  Cd Length: 265  Bit Score: 291.72  E-value: 1.73e-101
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992   1 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGsvEDLELEDVMKVGYKGI 80
Cdd:cd02040   2 QIAIYGKGGIGKSTTASNLSAALAEMGKKVLHVGCDPKADSTRLLLGGKAIPTVLDTLREKG--EVEELEDVIKEGFNGI 79

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22163992  81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAY-EDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:cd02040  80 KCVESGGPEPGVGCAGRGIITAINLLEELGAYeEDLDVVFYDVLGDVVCGGFAMPIREGYADEVYIVTSGEMMAL 154
nifH TIGR01287
nitrogenase iron protein; This model describes nitrogenase (EC 1.18.6.1) iron protein, also ...
 1-154 3.04e-100

nitrogenase iron protein; This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. [Central intermediary metabolism, Nitrogen fixation]


Pssm-ID: 273538  Cd Length: 275  Bit Score: 288.90  E-value: 3.04e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992     1 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGSvEDLELEDVMKVGYKGI 80
Cdd:TIGR01287   2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGA-EDLELEDVIKEGFGGI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22163992    81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAY-EDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:TIGR01287  81 RCVESGGPEPGVGCAGRGVITAINLLEELGAYeDDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAL 155
Fer4_NifH pfam00142
4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family;
1-154 1.19e-96

4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family;


Pssm-ID: 395090  Cd Length: 271  Bit Score: 279.71  E-value: 1.19e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992     1 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGSVEDLELEDVMKVGYKGI 80
Cdd:pfam00142   2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLVVGCDPKADSTRLLLGGKLQPTVLDTAREKGYVEDVEVEDVVYKGYGGV 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22163992    81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAYEDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:pfam00142  82 KCVESGGPEPGVGCAGRGVITAINLLEELGAYDDLDFVLYDVLGDVVCGGFAMPIREGKAQEIYIVTSNEMMAL 155
F430_CfbC NF033200
Ni-sirohydrochlorin a,c-diamide reductive cyclase ATP-dependent reductase subunit; This family, ...
 1-154 7.20e-80

Ni-sirohydrochlorin a,c-diamide reductive cyclase ATP-dependent reductase subunit; This family, very closely related to the nitrogenase iron protein, was identified as a subunit involved in biosynthesis of coenzyme F430 in archaeal methanogens and archaeal anaerobic methanotrophs.


Pssm-ID: 380202  Cd Length: 260  Bit Score: 236.70  E-value: 7.20e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992    1 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGsveDLELEDVMKVGYKGI 80
Cdd:NF033200   2 QIAIYGKGGIGKSTTVSNLAAALSEEGKKVMVIGCDPKADSTRTLMGGRRIPTILDLLRENK---NIKEEDVVFEGYGGV 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22163992   81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAY-EDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:NF033200  79 RCVESGGPEPGVGCAGRGIIVAMQLLEKLGAFmEDLDVIIYDVLGDVVCGGFAVPLREGYADEVYIVTSGEYMSL 153
nifH PRK13233
nitrogenase iron protein;
1-154 4.00e-78

nitrogenase iron protein;


Pssm-ID: 183905  Cd Length: 275  Bit Score: 232.79  E-value: 4.00e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992    1 QIAFYGKGGIGKSTTSQNTLAALVEM-GQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGSvEDLELEDVMKVGYKG 79
Cdd:PRK13233   4 KIAIYGKGGIGKSTTTQNTAAAMAYFhDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGE-EKVTPDKVIKTGFKD 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22163992   80 IKCTEAGGPEPGVGCAGRGVITAINFLEENGAY-EDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:PRK13233  83 IRCVESGGPEPGVGCAGRGVITAIDLMEENGAYtDDLDFVFFDVLGDVVCGGFAMPIRDGKAQEVYIVASGEMMAI 158
ArsA_halo NF041417
arsenical pump-driving ATPase, halobacterial type; Members of this family of arsenical ...
 4-39 5.76e-04

arsenical pump-driving ATPase, halobacterial type; Members of this family of arsenical pump-driving ATPase (ArsA) occur typically in Halobacteria (a branch of the archaea), accompanied by homologs of ArsD and by HcsL and HcsS (halo-CC-Star proteins, long and short), two proteins that both end with Cys-Cys-COOH motifs indicative of interaction with heavy metal atoms.


Pssm-ID: 469308 [Multi-domain]  Cd Length: 617  Bit Score: 39.09  E-value: 5.76e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 22163992    4 FYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKA 39
Cdd:NF041417 338 FTGKGGVGKSTIASTTATYLAEEGYETLIVTTDPAS 373
ArsA_halo NF041417
arsenical pump-driving ATPase, halobacterial type; Members of this family of arsenical ...
 2-37 3.73e-03

arsenical pump-driving ATPase, halobacterial type; Members of this family of arsenical pump-driving ATPase (ArsA) occur typically in Halobacteria (a branch of the archaea), accompanied by homologs of ArsD and by HcsL and HcsS (halo-CC-Star proteins, long and short), two proteins that both end with Cys-Cys-COOH motifs indicative of interaction with heavy metal atoms.


Pssm-ID: 469308 [Multi-domain]  Cd Length: 617  Bit Score: 36.78  E-value: 3.73e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 22163992    2 IAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 37
Cdd:NF041417  15 VFFSGKGGVGKSTVSCATAQWLARNGYDTLLVTTDP 50
 
Name Accession Description Interval E-value
NifH/CfbC COG1348
Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport ...
 1-154 1.96e-109

Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440959  Cd Length: 276  Bit Score: 312.11  E-value: 1.96e-109
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992   1 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGsvEDLELEDVMKVGYKGI 80
Cdd:COG1348   4 QIAIYGKGGIGKSTTSSNLSAALAEMGKKVMQIGCDPKADSTRLLLGGKRIPTVLDTLREKG--EDVELEDIVFEGFGGV 81

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22163992  81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAYE-DVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:COG1348  82 KCVEAGGPEPGVGCAGRGIITAIELLEELGAYEeDLDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGEFMAL 156
NifH cd02040
nitrogenase component II NifH; NifH gene encodes component II (iron protein) of nitrogenase. ...
 1-154 1.73e-101

nitrogenase component II NifH; NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.


Pssm-ID: 349759  Cd Length: 265  Bit Score: 291.72  E-value: 1.73e-101
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992   1 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGsvEDLELEDVMKVGYKGI 80
Cdd:cd02040   2 QIAIYGKGGIGKSTTASNLSAALAEMGKKVLHVGCDPKADSTRLLLGGKAIPTVLDTLREKG--EVEELEDVIKEGFNGI 79

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22163992  81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAY-EDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:cd02040  80 KCVESGGPEPGVGCAGRGIITAINLLEELGAYeEDLDVVFYDVLGDVVCGGFAMPIREGYADEVYIVTSGEMMAL 154
nifH TIGR01287
nitrogenase iron protein; This model describes nitrogenase (EC 1.18.6.1) iron protein, also ...
 1-154 3.04e-100

nitrogenase iron protein; This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. [Central intermediary metabolism, Nitrogen fixation]


Pssm-ID: 273538  Cd Length: 275  Bit Score: 288.90  E-value: 3.04e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992     1 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGSvEDLELEDVMKVGYKGI 80
Cdd:TIGR01287   2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGA-EDLELEDVIKEGFGGI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22163992    81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAY-EDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:TIGR01287  81 RCVESGGPEPGVGCAGRGVITAINLLEELGAYeDDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAL 155
Fer4_NifH pfam00142
4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family;
1-154 1.19e-96

4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family;


Pssm-ID: 395090  Cd Length: 271  Bit Score: 279.71  E-value: 1.19e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992     1 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGSVEDLELEDVMKVGYKGI 80
Cdd:pfam00142   2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLVVGCDPKADSTRLLLGGKLQPTVLDTAREKGYVEDVEVEDVVYKGYGGV 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22163992    81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAYEDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:pfam00142  82 KCVESGGPEPGVGCAGRGVITAINLLEELGAYDDLDFVLYDVLGDVVCGGFAMPIREGKAQEIYIVTSNEMMAL 155
F430_CfbC NF033200
Ni-sirohydrochlorin a,c-diamide reductive cyclase ATP-dependent reductase subunit; This family, ...
 1-154 7.20e-80

Ni-sirohydrochlorin a,c-diamide reductive cyclase ATP-dependent reductase subunit; This family, very closely related to the nitrogenase iron protein, was identified as a subunit involved in biosynthesis of coenzyme F430 in archaeal methanogens and archaeal anaerobic methanotrophs.


Pssm-ID: 380202  Cd Length: 260  Bit Score: 236.70  E-value: 7.20e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992    1 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGsveDLELEDVMKVGYKGI 80
Cdd:NF033200   2 QIAIYGKGGIGKSTTVSNLAAALSEEGKKVMVIGCDPKADSTRTLMGGRRIPTILDLLRENK---NIKEEDVVFEGYGGV 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22163992   81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAY-EDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:NF033200  79 RCVESGGPEPGVGCAGRGIIVAMQLLEKLGAFmEDLDVIIYDVLGDVVCGGFAVPLREGYADEVYIVTSGEYMSL 153
nifH PRK13233
nitrogenase iron protein;
1-154 4.00e-78

nitrogenase iron protein;


Pssm-ID: 183905  Cd Length: 275  Bit Score: 232.79  E-value: 4.00e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992    1 QIAFYGKGGIGKSTTSQNTLAALVEM-GQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGSvEDLELEDVMKVGYKG 79
Cdd:PRK13233   4 KIAIYGKGGIGKSTTTQNTAAAMAYFhDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGE-EKVTPDKVIKTGFKD 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22163992   80 IKCTEAGGPEPGVGCAGRGVITAINFLEENGAY-EDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:PRK13233  83 IRCVESGGPEPGVGCAGRGVITAIDLMEENGAYtDDLDFVFFDVLGDVVCGGFAMPIRDGKAQEVYIVASGEMMAI 158
NifH-like cd02117
NifH family; This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) ...
 1-154 7.74e-75

NifH family; This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase, and the BchX subunit of the Chlorophyllide reductase. Members of this family use energy from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for substrate reduction


Pssm-ID: 349761  Cd Length: 266  Bit Score: 224.17  E-value: 7.74e-75
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992   1 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGSVEDLELEDVMKVGYKGI 80
Cdd:cd02117   2 SIVVYGKGGIGKSTTASNLSAALAEGGKKVLHVGCDPKHDSTLLLTGGKVPPTIDEMLTEDGTAEELRREDLLFSGFNGV 81

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22163992  81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAYED-VDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:cd02117  82 DCVEAGGPEPGVGCGGRGIGTMLELLEEHGLLDDdYDVVIFDVLGDVVCGGFAAPLRRGFAQKVVIVVSEELMSL 156
PRK13230 PRK13230
nitrogenase reductase-like protein; Reviewed
 1-154 2.43e-61

nitrogenase reductase-like protein; Reviewed


Pssm-ID: 183903  Cd Length: 279  Bit Score: 190.37  E-value: 2.43e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992    1 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMqDTVLSLAAEAGsVEDLELEDVMKVGYKGI 80
Cdd:PRK13230   3 KFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGEKI-PTVLDVLREKG-IDNLGLEDIIYEGFNGI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22163992   81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAYED--VDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:PRK13230  81 YCVESGGPEPGYGCAGRGVITAIDLLKKLGVFEElgPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAI 156
PRK13231 PRK13231
nitrogenase reductase-like protein; Reviewed
 1-154 3.13e-53

nitrogenase reductase-like protein; Reviewed


Pssm-ID: 183904  Cd Length: 264  Bit Score: 169.21  E-value: 3.13e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992    1 QIAFYGKGGIGKSTTSQNtLAALVEMGQKILIVGCDPKADSTRLILNTKMQdTVLSLAAEAgsvEDLELEDVMKVGYKGI 80
Cdd:PRK13231   4 KIAIYGKGGIGKSTTVSN-MAAAYSNDHRVLVIGCDPKADTTRTLCGKRIP-TVLDTLKDN---RKPELEDIIHEGFNGI 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22163992   81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAY-EDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:PRK13231  79 LCVESGGPEPGVGCAGRGVIVAMNLLENLGVFdEDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSL 153
Bchl-like cd02032
L-subunit of protochlorophyllide reductase; This family of proteins contains BchL and ChlL. ...
 2-146 9.82e-47

L-subunit of protochlorophyllide reductase; This family of proteins contains BchL and ChlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.


Pssm-ID: 349752  Cd Length: 267  Bit Score: 152.45  E-value: 9.82e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992   2 IAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTrLILNTKMQDTVL-SLAAEAGSVEDLELEDVMKVGYKGI 80
Cdd:cd02032   3 IAVYGKGGIGKSTTSSNLSAAFAKRGKKVLQIGCDPKHDST-FTLTGFLIPTVIdVLQSVDFHYEEVWPEDVIFTGYGGV 81

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22163992  81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAYEDVDYVSYDVLGDVVCGGFAMPIreNKAQEIYIV 146
Cdd:cd02032  82 DCVEAGGPPAGTGCGGYVVGETVKLLKELNAFDEYDVILFDVLGDVVCGGFAAPL--NYADYCLIV 145
chlL PRK13185
protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
 2-135 2.24e-46

protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional


Pssm-ID: 237293  Cd Length: 270  Bit Score: 151.65  E-value: 2.24e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992    2 IAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTrLILNTKMQDTVLSLAAEAG-SVEDLELEDVMKVGYKGI 80
Cdd:PRK13185   5 LAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDST-FTLTGKLVPTVIDILEEVDfHSEELRPEDFVYEGYNGV 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 22163992   81 KCTEAGGPEPGVGCAGRGVITAINFLEENGAYEDVDYVSYDVLGDVVCGGFAMPI 135
Cdd:PRK13185  84 DCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGGFAAPL 138
chlL CHL00072
photochlorophyllide reductase subunit L
 1-135 1.85e-38

photochlorophyllide reductase subunit L


Pssm-ID: 177011  Cd Length: 290  Bit Score: 131.78  E-value: 1.85e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992    1 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTrLILNTKMQDTVL-SLAAEAGSVEDLELEDVMKVGYKG 79
Cdd:CHL00072   2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDST-FTLTGFLIPTIIdTLQSKDYHYEDVWPEDVIYKGYGG 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 22163992   80 IKCTEAGGPEPGVGCAGRGVITAINFLEENGAYEDVDYVSYDVLGDVVCGGFAMPI 135
Cdd:CHL00072  81 VDCVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDIILFDVLGDVVCGGFAAPL 136
BchX cd02033
X-subunit of protochlorophyllide reductase; Chlorophyllide reductase converts chlorophylls ...
 2-154 3.84e-34

X-subunit of protochlorophyllide reductase; Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.


Pssm-ID: 349753  Cd Length: 329  Bit Score: 121.86  E-value: 3.84e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22163992   2 IAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAE---AGsvEDLELEDV-MKVGy 77
Cdd:cd02033  34 IAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSTRkklAG--EEVKIGDVcFKRG- 110

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22163992  78 kGIKCTEAGGPEPGVGCAGRGVITAINFLEENGAYE-DVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 154
Cdd:cd02033 111 -GVFAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDwGFDYVLLDFLGDVVCGGFGLPIARDMCQKVIVVGSNDLQSL 187
AAA_31 pfam13614
AAA domain; This family includes a wide variety of AAA domains including some that have lost ...
 2-73 1.06e-08

AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.


Pssm-ID: 433350 [Multi-domain]  Cd Length: 177  Bit Score: 51.43  E-value: 1.06e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22163992     2 IAFYG-KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTR--LILNTKMQDTVLSLAAEAGSVEDLELEDVM 73
Cdd:pfam13614   4 IAIANqKGGVGKTTTSVNLAAALAKKGKKVLLIDLDPQGNATSglGIDKNNVEKTIYELLIGECNIEEAIIKTVI 78
ParAB_family cd02042
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ...
 2-45 3.57e-08

partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.


Pssm-ID: 349760 [Multi-domain]  Cd Length: 130  Bit Score: 49.08  E-value: 3.57e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 22163992   2 IAFYG-KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLI 45
Cdd:cd02042   3 IAVANqKGGVGKTTLAVNLAAALALRGKRVLLIDLDPQGSLTSWL 47
ParA COG1192
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ...
 2-67 5.84e-08

ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440805 [Multi-domain]  Cd Length: 253  Bit Score: 50.24  E-value: 5.84e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22163992   2 IAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRL--ILNTKMQDTVLSLAAEAGSVEDL 67
Cdd:COG1192   4 IAVAnQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQGNLTSGlgLDPDDLDPTLYDLLLDDAPLEDA 72
ArsA_ATPase pfam02374
Anion-transporting ATPase; This Pfam family represents a conserved domain, which is sometimes ...
 2-49 1.65e-05

Anion-transporting ATPase; This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.


Pssm-ID: 396792  Cd Length: 302  Bit Score: 43.11  E-value: 1.65e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 22163992     2 IAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPkADSTRLILNTK 49
Cdd:pfam02374   4 IFFGGKGGVGKTTVSAATAVQLSELGKKVLLISTDP-AHSLSDSFNQK 50
arsen_driv_ArsA TIGR04291
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family ...
 4-37 2.46e-05

arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).


Pssm-ID: 275109 [Multi-domain]  Cd Length: 566  Bit Score: 43.15  E-value: 2.46e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 22163992     4 FYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 37
Cdd:TIGR04291   8 FTGKGGVGKTSIACATAINLADQGKRVLLVSTDP 41
SIMIBI cd01983
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ...
 2-36 4.63e-05

SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.


Pssm-ID: 349751 [Multi-domain]  Cd Length: 107  Bit Score: 40.49  E-value: 4.63e-05
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 22163992   2 IAFYG-KGGIGKSTTSQNTLAALVEMGQKILIVGCD 36
Cdd:cd01983   3 IAVTGgKGGVGKTTLAAALAVALAAKGYKVLLIDLD 38
MinD cd02036
septum site-determining protein MinD; Septum site-determining protein MinD is part of the ...
 6-36 1.83e-04

septum site-determining protein MinD; Septum site-determining protein MinD is part of the operon MinCDE that determines the site of the formation of a septum at mid-cell, an important part of bacterial cell division. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein.


Pssm-ID: 349756 [Multi-domain]  Cd Length: 236  Bit Score: 39.88  E-value: 1.83e-04
                        10        20        30
                ....*....|....*....|....*....|.
gi 22163992   6 GKGGIGKSTTSQNTLAALVEMGQKILIVGCD 36
Cdd:cd02036   8 GKGGVGKTTTTANLGVALAKLGKKVLLIDAD 38
Mrp_NBP35 cd02037
Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically ...
 6-36 4.56e-04

Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically iron-sulfur (FeS) cluster scaffolds that function to assemble nascent FeS clusters for transfer to FeS-requiring enzymes. Members include the eukaryotic nucleotide-binding protein 1 (NUBP1) which is a component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery and the archael [NiFe] hydrogenase maturation protein HypB which is required for nickel insertion into [NiFe] hydrogenase.


Pssm-ID: 349757 [Multi-domain]  Cd Length: 213  Bit Score: 38.64  E-value: 4.56e-04
                        10        20        30
                ....*....|....*....|....*....|.
gi 22163992   6 GKGGIGKSTTSQNTLAALVEMGQKILIVGCD 36
Cdd:cd02037   8 GKGGVGKSTVAVNLALALAKKGYKVGLLDAD 38
CbiA pfam01656
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ...
 6-73 5.32e-04

CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.


Pssm-ID: 426369 [Multi-domain]  Cd Length: 228  Bit Score: 38.87  E-value: 5.32e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22163992     6 GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEaGSVEDLELEDVM 73
Cdd:pfam01656   6 TKGGVGKTTLAANLARALARRGLRVLLIDLDPQSNNSSVEGLEGDIAPALQALAE-GLKGRVNLDPIL 72
ArsA_halo NF041417
arsenical pump-driving ATPase, halobacterial type; Members of this family of arsenical ...
 4-39 5.76e-04

arsenical pump-driving ATPase, halobacterial type; Members of this family of arsenical pump-driving ATPase (ArsA) occur typically in Halobacteria (a branch of the archaea), accompanied by homologs of ArsD and by HcsL and HcsS (halo-CC-Star proteins, long and short), two proteins that both end with Cys-Cys-COOH motifs indicative of interaction with heavy metal atoms.


Pssm-ID: 469308 [Multi-domain]  Cd Length: 617  Bit Score: 39.09  E-value: 5.76e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 22163992    4 FYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKA 39
Cdd:NF041417 338 FTGKGGVGKSTIASTTATYLAEEGYETLIVTTDPAS 373
Mrp COG0489
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ...
 6-36 6.27e-04

Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440255 [Multi-domain]  Cd Length: 289  Bit Score: 38.63  E-value: 6.27e-04
                        10        20        30
                ....*....|....*....|....*....|.
gi 22163992   6 GKGGIGKSTTSQNTLAALVEMGQKILIVGCD 36
Cdd:COG0489 100 GKGGEGKSTVAANLALALAQSGKRVLLIDAD 130
CooC COG3640
CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, ...
 2-37 7.75e-04

CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442857 [Multi-domain]  Cd Length: 249  Bit Score: 38.22  E-value: 7.75e-04
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 22163992   2 IAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 37
Cdd:COG3640   3 IAVAGKGGVGKTTLSALLARYLAEKGKPVLAVDADP 38
PHA02518 PHA02518
ParA-like protein; Provisional
 7-42 7.92e-04

ParA-like protein; Provisional


Pssm-ID: 222854 [Multi-domain]  Cd Length: 211  Bit Score: 38.29  E-value: 7.92e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 22163992    7 KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADST 42
Cdd:PHA02518   9 KGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSST 44
ArsA cd02035
Arsenical pump-driving ATPase ArsA; ArsA ATPase functions as an efflux pump located on the ...
 1-37 8.42e-04

Arsenical pump-driving ATPase ArsA; ArsA ATPase functions as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes, respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.


Pssm-ID: 349755 [Multi-domain]  Cd Length: 250  Bit Score: 38.26  E-value: 8.42e-04
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 22163992   1 QIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 37
Cdd:cd02035   1 RIIFFgGKGGVGKTTIAAATAVRLAEQGKRVLLVSTDP 38
CooC1 cd02034
accessory protein CooC1; The accessory protein CooC1, a nickel-binding ATPase, participates in ...
 2-39 1.38e-03

accessory protein CooC1; The accessory protein CooC1, a nickel-binding ATPase, participates in the incorporation of nickel into the complex active site ([Ni-4Fe-4S]) cluster of Ni,Fe-dependent carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.


Pssm-ID: 349754 [Multi-domain]  Cd Length: 249  Bit Score: 37.68  E-value: 1.38e-03
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 22163992   2 IAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKA 39
Cdd:cd02034   3 IAVAGKGGVGKTTIAALLIRYLAKKGGKVLAVDADPNS 40
FlhG-like cd02038
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ...
 6-36 1.99e-03

MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.


Pssm-ID: 349758 [Multi-domain]  Cd Length: 230  Bit Score: 37.16  E-value: 1.99e-03
                        10        20        30
                ....*....|....*....|....*....|.
gi 22163992   6 GKGGIGKSTTSQNTLAALVEMGQKILIVGCD 36
Cdd:cd02038   8 GKGGVGKTNVSANLALALSKLGKRVLLLDAD 38
ArsA COG0003
Anion-transporting ATPase, ArsA/GET3 family [Inorganic ion transport and metabolism];
2-37 3.09e-03

Anion-transporting ATPase, ArsA/GET3 family [Inorganic ion transport and metabolism];


Pssm-ID: 439774  Cd Length: 299  Bit Score: 36.72  E-value: 3.09e-03
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 22163992   2 IAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 37
Cdd:COG0003   6 IFFTGKGGVGKTTVAAATALALAERGKRTLLVSTDP 41
ArsA_halo NF041417
arsenical pump-driving ATPase, halobacterial type; Members of this family of arsenical ...
 2-37 3.73e-03

arsenical pump-driving ATPase, halobacterial type; Members of this family of arsenical pump-driving ATPase (ArsA) occur typically in Halobacteria (a branch of the archaea), accompanied by homologs of ArsD and by HcsL and HcsS (halo-CC-Star proteins, long and short), two proteins that both end with Cys-Cys-COOH motifs indicative of interaction with heavy metal atoms.


Pssm-ID: 469308 [Multi-domain]  Cd Length: 617  Bit Score: 36.78  E-value: 3.73e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 22163992    2 IAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 37
Cdd:NF041417  15 VFFSGKGGVGKSTVSCATAQWLARNGYDTLLVTTDP 50
ParA pfam10609
NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid ...
 6-30 5.53e-03

NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.


Pssm-ID: 431392 [Multi-domain]  Cd Length: 246  Bit Score: 35.89  E-value: 5.53e-03
                          10        20
                  ....*....|....*....|....*
gi 22163992     6 GKGGIGKSTTSQNTLAALVEMGQKI 30
Cdd:pfam10609  11 GKGGVGKSTVAVNLALALARLGYKV 35
PRK11670 PRK11670
iron-sulfur cluster carrier protein ApbC;
6-36 5.63e-03

iron-sulfur cluster carrier protein ApbC;


Pssm-ID: 183270 [Multi-domain]  Cd Length: 369  Bit Score: 35.79  E-value: 5.63e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 22163992    6 GKGGIGKSTTSQNTLAALVEMGQKILIVGCD 36
Cdd:PRK11670 115 GKGGVGKSSTAVNLALALAAEGAKVGILDAD 145
CpaE COG4963
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ...
 2-73 6.00e-03

Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443989 [Multi-domain]  Cd Length: 358  Bit Score: 35.86  E-value: 6.00e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22163992   2 IAFYG-KGGIGKSTTSQNtLAALV--EMGQKILIVGCDPKADSTRLILNTKMQDTVLSLAAEAGSVEDLELEDVM 73
Cdd:COG4963 105 IAVVGaKGGVGATTLAVN-LAWALarESGRRVLLVDLDLQFGDVALYLDLEPRRGLADALRNPDRLDETLLDRAL 178
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 9-36 8.52e-03

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 34.85  E-value: 8.52e-03
                        10        20
                ....*....|....*....|....*...
gi 22163992   9 GIGKSTTSQNTLAALVEMGQKILIVGCD 36
Cdd:cd05387  30 GEGKSTVAANLAVALAQSGKRVLLIDAD 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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