NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|21752065|dbj|BAC04108|]
View 

unnamed protein product [Homo sapiens]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
10-93 2.09e-13

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 71.89  E-value: 2.09e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065  10 LHLQRNALCVIPQDFFQLlPNLTWLDLRYNRIKALPSGIGAHQHLKTLLLERNPIKMLPVELGSVTTLKALNLRHCPLEF 89
Cdd:COG4886 164 LDLSNNQLTDLPEELGNL-TNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTD 242


                ....
gi 21752065  90 PPQL 93
Cdd:COG4886 243 LPEL 246
PTZ00121 super family cl31754
MAEBL; Provisional
 155-434 2.65e-04

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 2.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   155 AQDPKGAVMKEKASflppvEKPDLSELRKSAD----SSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLK 230
Cdd:PTZ00121 1415 AAKKKADEAKKKAE-----EKKKADEAKKKAEeakkADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   231 AalniEKELPKPRHVFRRKTASSRSVLPDLLSPYQM--AIRAKRLEESRAA-ALRELQEKQALMEQQRREKraLQEWRER 307
Cdd:PTZ00121 1490 K----KAEEAKKKADEAKKAAEAKKKADEAKKAEEAkkADEAKKAEEAKKAdEAKKAEEKKKADELKKAEE--LKKAEEK 1563

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   308 AQRMRKRKEELSKLLPPRRSMVASKIPSATdlIDNRKVPLNPPGKMKpsKEKSPQASKEMSALQERNLEEKIKQHVLQMR 387
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAEEAR--IEEVMKLYEEEKKMK--AEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 21752065   388 EQRrfhgqaplEEMRKAAEDLEIATElQDEVLKLKLGLTLNKDRRRA 434
Cdd:PTZ00121 1640 KKE--------AEEKKKAEELKKAEE-ENKIKAAEEAKKAEEDKKKA 1677
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
10-93 2.09e-13

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 71.89  E-value: 2.09e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065  10 LHLQRNALCVIPQDFFQLlPNLTWLDLRYNRIKALPSGIGAHQHLKTLLLERNPIKMLPVELGSVTTLKALNLRHCPLEF 89
Cdd:COG4886 164 LDLSNNQLTDLPEELGNL-TNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTD 242


                ....
gi 21752065  90 PPQL 93
Cdd:COG4886 243 LPEL 246
LRR_8 pfam13855
Leucine rich repeat;
10-64 6.89e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 46.36  E-value: 6.89e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 21752065    10 LHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAH-QHLKTLLLERNPI 64
Cdd:pfam13855   6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGlPSLRYLDLSGNRL 61
PTZ00121 PTZ00121
MAEBL; Provisional
 155-434 2.65e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 2.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   155 AQDPKGAVMKEKASflppvEKPDLSELRKSAD----SSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLK 230
Cdd:PTZ00121 1415 AAKKKADEAKKKAE-----EKKKADEAKKKAEeakkADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   231 AalniEKELPKPRHVFRRKTASSRSVLPDLLSPYQM--AIRAKRLEESRAA-ALRELQEKQALMEQQRREKraLQEWRER 307
Cdd:PTZ00121 1490 K----KAEEAKKKADEAKKAAEAKKKADEAKKAEEAkkADEAKKAEEAKKAdEAKKAEEKKKADELKKAEE--LKKAEEK 1563

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   308 AQRMRKRKEELSKLLPPRRSMVASKIPSATdlIDNRKVPLNPPGKMKpsKEKSPQASKEMSALQERNLEEKIKQHVLQMR 387
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAEEAR--IEEVMKLYEEEKKMK--AEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 21752065   388 EQRrfhgqaplEEMRKAAEDLEIATElQDEVLKLKLGLTLNKDRRRA 434
Cdd:PTZ00121 1640 KKE--------AEEKKKAEELKKAEE-ENKIKAAEEAKKAEEDKKKA 1677
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 268-407 7.35e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 42.03  E-value: 7.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   268 IRAKRLEESRAAALRELQEKQALMEQQRREKRALQEWRERAQRMRKRKEELSKLLPPRRSMVASKipsatDLIDNRKVPL 347
Cdd:pfam17380 435 REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK-----ELEERKQAMI 509

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   348 NPPGKMKPSKEKSPQASKEMSALQERNLEEKIKQHVLQMREQRRFHgqaplEEMRKAAED 407
Cdd:pfam17380 510 EEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQ-----EQMRKATEE 564
LRR smart00370
Leucine-rich repeats, outliers;
28-51 4.73e-03

Leucine-rich repeats, outliers;


Pssm-ID: 197688 [Multi-domain]  Cd Length: 24  Bit Score: 34.25  E-value: 4.73e-03
                           10        20
                   ....*....|....*....|....
gi 21752065     28 LPNLTWLDLRYNRIKALPSGIGAH 51
Cdd:smart00370   1 LPNLRELDLSNNQLSSLPPGAFQG 24
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
10-93 2.09e-13

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 71.89  E-value: 2.09e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065  10 LHLQRNALCVIPQDFFQLlPNLTWLDLRYNRIKALPSGIGAHQHLKTLLLERNPIKMLPVELGSVTTLKALNLRHCPLEF 89
Cdd:COG4886 164 LDLSNNQLTDLPEELGNL-TNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTD 242


                ....
gi 21752065  90 PPQL 93
Cdd:COG4886 243 LPEL 246
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
9-93 2.56e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 68.42  E-value: 2.56e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   9 QLHLQRNALCVIPQDFFQLlPNLTWLDLRYNRIKALPSGIGAHQHLKTLLLERNPIKMLPVELGSVTTLKALNLRHCPL- 87
Cdd:COG4886 117 SLDLSGNQLTDLPEELANL-TNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQIt 195


                ....*.
gi 21752065  88 EFPPQL 93
Cdd:COG4886 196 DLPEPL 201
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
9-93 1.07e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 66.50  E-value: 1.07e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   9 QLHLQRNALCVIPQDFFQLlPNLTWLDLRYNRIKALPSGIGAHQHLKTLLLERNPIKMLPVELGSVTTLKALNLRHCPL- 87
Cdd:COG4886 140 ELDLSNNQLTDLPEPLGNL-TNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLt 218


                ....*.
gi 21752065  88 EFPPQL 93
Cdd:COG4886 219 DLPEPL 224
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
28-88 1.29e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 59.95  E-value: 1.29e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21752065  28 LPNLTWLDLRYNRIKALPSGIGAHQHLKTLLLERNPIKMLPVELGSVTTLKALNLRHCPLE 88
Cdd:COG4886 112 LTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLT 172
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
10-88 8.30e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 57.25  E-value: 8.30e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 21752065  10 LHLQRNALCVIPQDFFQLlPNLTWLDLRYNRIKALPSgIGAHQHLKTLLLERNPIKMLPvELGSVTTLKALNLRHCPLE 88
Cdd:COG4886 210 LDLSGNQLTDLPEPLANL-TNLETLDLSNNQLTDLPE-LGNLTNLEELDLSNNQLTDLP-PLANLTNLKTLDLSNNQLT 285
LRR_8 pfam13855
Leucine rich repeat;
10-64 6.89e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 46.36  E-value: 6.89e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 21752065    10 LHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAH-QHLKTLLLERNPI 64
Cdd:pfam13855   6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGlPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
2-93 4.40e-05

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 45.69  E-value: 4.40e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   2 DINTYNNQLHLQRNALCVIPQDFFQLLPNLTWLDLRYNRikalpsGIGAHQHLKTLLLERNPIKMLPVELGSVTTLKALN 81
Cdd:COG4886  69 LSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE------ELSNLTNLESLDLSGNQLTDLPEELANLTNLKELD 142

                        90
                ....*....|...
gi 21752065  82 LRHCPL-EFPPQL 93
Cdd:COG4886 143 LSNNQLtDLPEPL 155
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
10-70 5.42e-05

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 45.31  E-value: 5.42e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21752065  10 LHLQRNALCVIPQdfFQLLPNLTWLDLRYNRIKALPSgIGAHQHLKTLLLERNPIKMLPVE 70
Cdd:COG4886 233 LDLSNNQLTDLPE--LGNLTNLEELDLSNNQLTDLPP-LANLTNLKTLDLSNNQLTDLKLK 290
LRR_8 pfam13855
Leucine rich repeat;
29-87 1.26e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.82  E-value: 1.26e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21752065    29 PNLTWLDLRYNRIKALPSGIGAH-QHLKTLLLERNPIKML-PVELGSVTTLKALNLRHCPL 87
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGlSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
PTZ00121 PTZ00121
MAEBL; Provisional
 155-434 2.65e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 2.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   155 AQDPKGAVMKEKASflppvEKPDLSELRKSAD----SSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLK 230
Cdd:PTZ00121 1415 AAKKKADEAKKKAE-----EKKKADEAKKKAEeakkADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   231 AalniEKELPKPRHVFRRKTASSRSVLPDLLSPYQM--AIRAKRLEESRAA-ALRELQEKQALMEQQRREKraLQEWRER 307
Cdd:PTZ00121 1490 K----KAEEAKKKADEAKKAAEAKKKADEAKKAEEAkkADEAKKAEEAKKAdEAKKAEEKKKADELKKAEE--LKKAEEK 1563

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   308 AQRMRKRKEELSKLLPPRRSMVASKIPSATdlIDNRKVPLNPPGKMKpsKEKSPQASKEMSALQERNLEEKIKQHVLQMR 387
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAEEAR--IEEVMKLYEEEKKMK--AEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 21752065   388 EQRrfhgqaplEEMRKAAEDLEIATElQDEVLKLKLGLTLNKDRRRA 434
Cdd:PTZ00121 1640 KKE--------AEEKKKAEELKKAEE-ENKIKAAEEAKKAEEDKKKA 1677
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 268-407 7.35e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 42.03  E-value: 7.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   268 IRAKRLEESRAAALRELQEKQALMEQQRREKRALQEWRERAQRMRKRKEELSKLLPPRRSMVASKipsatDLIDNRKVPL 347
Cdd:pfam17380 435 REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK-----ELEERKQAMI 509

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   348 NPPGKMKPSKEKSPQASKEMSALQERNLEEKIKQHVLQMREQRRFHgqaplEEMRKAAED 407
Cdd:pfam17380 510 EEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQ-----EQMRKATEE 564
PTZ00121 PTZ00121
MAEBL; Provisional
 270-415 1.59e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   270 AKRLEESRAAALRELQEKQALMEQQRR--EKRALQEWRE-----RAQRMRKrKEELSKLLPPRRSMVASKIPSATDLIDN 342
Cdd:PTZ00121 1145 ARKAEDAKRVEIARKAEDARKAEEARKaeDAKKAEAARKaeevrKAEELRK-AEDARKAEAARKAEEERKAEEARKAEDA 1223

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 21752065   343 RKVPlnppgKMKPSKEKSPQASKEMSALQERNLEEKIKQHVLQMREQRRFHGQAPLEEMRKA-----AEDLEIATELQ 415
Cdd:PTZ00121 1224 KKAE-----AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAdelkkAEEKKKADEAK 1296
LRR smart00370
Leucine-rich repeats, outliers;
28-51 4.73e-03

Leucine-rich repeats, outliers;


Pssm-ID: 197688 [Multi-domain]  Cd Length: 24  Bit Score: 34.25  E-value: 4.73e-03
                           10        20
                   ....*....|....*....|....
gi 21752065     28 LPNLTWLDLRYNRIKALPSGIGAH 51
Cdd:smart00370   1 LPNLRELDLSNNQLSSLPPGAFQG 24
LRR_TYP smart00369
Leucine-rich repeats, typical (most populated) subfamily;
28-51 4.73e-03

Leucine-rich repeats, typical (most populated) subfamily;


Pssm-ID: 197687 [Multi-domain]  Cd Length: 24  Bit Score: 34.25  E-value: 4.73e-03
                           10        20
                   ....*....|....*....|....
gi 21752065     28 LPNLTWLDLRYNRIKALPSGIGAH 51
Cdd:smart00369   1 LPNLRELDLSNNQLSSLPPGAFQG 24
PTZ00121 PTZ00121
MAEBL; Provisional
 147-422 8.49e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 38.97  E-value: 8.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   147 ASNQGAVNAQDPKGAVMKEKASflppvEKPDLSELRKSadssenwpseEEIRRFWKLRQEIVEHVKADVLGDQllTRELP 226
Cdd:PTZ00121 1266 ARRQAAIKAEEARKADELKKAE-----EKKKADEAKKA----------EEKKKADEAKKKAEEAKKADEAKKK--AEEAK 1328

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   227 PNLKAALNIEKELPKPRHVFRRKTASSRSVLpdllspyqmairAKRLEESRAAALRELQEKQALMEQQRR--EKRALQEW 304
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEA------------EAAEEKAEAAEKKKEEAKKKADAAKKKaeEKKKADEA 1396

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21752065   305 RERAQRMRKRKEELSKLLPPRRSM-VASKIPSATDLIDNRKVPLNPPGKMKPSKEKSPQASKEMSAL---QERNLEEKIK 380
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKAdEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKkkaEEAKKADEAK 1476

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 21752065   381 QHVLQMREQRRFHGQAplEEMRKAAEDLEIATELQDEVLKLK 422
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKA--EEAKKKADEAKKAAEAKKKADEAK 1516
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH