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Conserved domains on  [gi|19110474|dbj|BAB85785|]
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polygalacturonase-inhibiting protein [Citrus hystrix]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 1000136)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00113 super family cl33413
leucine-rich repeat receptor-like protein kinase; Provisional
 26-301 1.14e-30

leucine-rich repeat receptor-like protein kinase; Provisional


The actual alignment was detected with superfamily member PLN00113:

Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 122.26  E-value: 1.14e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474   26 NPNDKKVLLKFKKALNNPY-VLASWNPKTDCCDWYCVTCDLSTnRINSLTIFAGDLPGQIPSEVGDLPYLETL------M 98
Cdd:PLN00113  27 HAEELELLLSFKSSINDPLkYLSNWNSSADVCLWQGITCNNSS-RVVSIDLSGKNISGKISSAIFRLPYIQTInlsnnqL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474   99 FHKLPS----------------------------------------LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFIS 138
Cdd:PLN00113 106 SGPIPDdifttssslrylnlsnnnftgsiprgsipnletldlsnnmLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  139 QLTNLTFLELSFNNLSGTIPSSLSKLQKLGALHLDRNKLTGSIPESFGTFTgSTPDLYLSHNQLSGKIPASLGSM-DFNT 217
Cdd:PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-SLNHLDLVYNNLTGPIPSSLGNLkNLQY 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  218 IDLSRNKLEGD-ASFLIGLNKTTQrIDVSRNLLEFnlskvEFPE---SLTNLDLNH---NKIFGSIPAQITSLENLGFLN 290
Cdd:PLN00113 265 LFLYQNKLSGPiPPSIFSLQKLIS-LDLSDNSLSG-----EIPElviQLQNLEILHlfsNNFTGKIPVALTSLPRLQVLQ 338

                        330
                 ....*....|.
gi 19110474  291 VSYNRLCGPIP 301
Cdd:PLN00113 339 LWSNKFSGEIP 349
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 26-301 1.14e-30

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 122.26  E-value: 1.14e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474   26 NPNDKKVLLKFKKALNNPY-VLASWNPKTDCCDWYCVTCDLSTnRINSLTIFAGDLPGQIPSEVGDLPYLETL------M 98
Cdd:PLN00113  27 HAEELELLLSFKSSINDPLkYLSNWNSSADVCLWQGITCNNSS-RVVSIDLSGKNISGKISSAIFRLPYIQTInlsnnqL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474   99 FHKLPS----------------------------------------LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFIS 138
Cdd:PLN00113 106 SGPIPDdifttssslrylnlsnnnftgsiprgsipnletldlsnnmLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  139 QLTNLTFLELSFNNLSGTIPSSLSKLQKLGALHLDRNKLTGSIPESFGTFTgSTPDLYLSHNQLSGKIPASLGSM-DFNT 217
Cdd:PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-SLNHLDLVYNNLTGPIPSSLGNLkNLQY 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  218 IDLSRNKLEGD-ASFLIGLNKTTQrIDVSRNLLEFnlskvEFPE---SLTNLDLNH---NKIFGSIPAQITSLENLGFLN 290
Cdd:PLN00113 265 LFLYQNKLSGPiPPSIFSLQKLIS-LDLSDNSLSG-----EIPElviQLQNLEILHlfsNNFTGKIPVALTSLPRLQVLQ 338

                        330
                 ....*....|.
gi 19110474  291 VSYNRLCGPIP 301
Cdd:PLN00113 339 LWSNKFSGEIP 349
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
111-317 4.14e-17

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 81.52  E-value: 4.14e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474 111 PAIAKLKNLKTLRISWTNISgPVPDFISQLTNLTFLELSFNNLSgTIPSSLSKLQKLGALHLDRNKLTgSIPESFGTFTG 190
Cdd:COG4886 130 EELANLTNLKELDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQLT-DLPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTN 206

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474 191 STpDLYLSHNQLSgKIPASLGSMDF-NTIDLSRNKLEgDASFLIGLNKTTqRIDVSRNLLEfNLSKVEFPESLTNLDLNH 269
Cdd:COG4886 207 LE-ELDLSGNQLT-DLPEPLANLTNlETLDLSNNQLT-DLPELGNLTNLE-ELDLSNNQLT-DLPPLANLTNLKTLDLSN 281

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 19110474 270 NKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHN 317
Cdd:COG4886 282 NQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLL 329
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 26-64 4.13e-10

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 54.22  E-value: 4.13e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 19110474    26 NPNDKKVLLKFKKALNNP-YVLASWNPK-TDCCDWYCVTCD 64
Cdd:pfam08263   1 LNDDGQALLAFKSSLNDPpGALSSWNSSsSDPCSWTGVTCD 41
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 26-301 1.14e-30

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 122.26  E-value: 1.14e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474   26 NPNDKKVLLKFKKALNNPY-VLASWNPKTDCCDWYCVTCDLSTnRINSLTIFAGDLPGQIPSEVGDLPYLETL------M 98
Cdd:PLN00113  27 HAEELELLLSFKSSINDPLkYLSNWNSSADVCLWQGITCNNSS-RVVSIDLSGKNISGKISSAIFRLPYIQTInlsnnqL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474   99 FHKLPS----------------------------------------LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFIS 138
Cdd:PLN00113 106 SGPIPDdifttssslrylnlsnnnftgsiprgsipnletldlsnnmLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  139 QLTNLTFLELSFNNLSGTIPSSLSKLQKLGALHLDRNKLTGSIPESFGTFTgSTPDLYLSHNQLSGKIPASLGSM-DFNT 217
Cdd:PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-SLNHLDLVYNNLTGPIPSSLGNLkNLQY 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  218 IDLSRNKLEGD-ASFLIGLNKTTQrIDVSRNLLEFnlskvEFPE---SLTNLDLNH---NKIFGSIPAQITSLENLGFLN 290
Cdd:PLN00113 265 LFLYQNKLSGPiPPSIFSLQKLIS-LDLSDNSLSG-----EIPElviQLQNLEILHlfsNNFTGKIPVALTSLPRLQVLQ 338

                        330
                 ....*....|.
gi 19110474  291 VSYNRLCGPIP 301
Cdd:PLN00113 339 LWSNKFSGEIP 349
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 64-322 1.62e-28

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 116.10  E-value: 1.62e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474   64 DLSTNrinsltifagDLPGQIPSEVGDLPYLETLMFHKlPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNL 143
Cdd:PLN00113 362 DLSTN----------NLTGEIPEGLCSSGNLFKLILFS-NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  144 TFLELSFNNLSGTIPSSLSKLQKLGALHLDRNKLTGSIPESFGTftGSTPDLYLSHNQLSGKIPASLGSM-DFNTIDLSR 222
Cdd:PLN00113 431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLsELMQLKLSE 508

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  223 NKLEGDASFLIGLNKTTQRIDVSRNLL--EFNLSKVEFPeSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPI 300
Cdd:PLN00113 509 NKLSGEIPDELSSCKKLVSLDLSHNQLsgQIPASFSEMP-VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587

                        250       260
                 ....*....|....*....|..
gi 19110474  301 PVGGKLQSFGYTEYFHNRCLCG 322
Cdd:PLN00113 588 PSTGAFLAINASAVAGNIDLCG 609
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 70-301 5.51e-26

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 108.78  E-value: 5.51e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474   70 INSLTIFAGDLPGQIPSEVGDLPYLETLMFHKlPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQL--------- 140
Cdd:PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ-NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLqnleilhlf 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  141 ---------------------------------------TNLTFLELSFNNLSGTIPSSLSKLQKLGALHLDRNKLTGSI 181
Cdd:PLN00113 317 snnftgkipvaltslprlqvlqlwsnkfsgeipknlgkhNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  182 PESFGTfTGSTPDLYLSHNQLSGKIPASLGSMDF-NTIDLSRNKLEGDASFLIGLNKTTQRIDVSRNLLEFNLSKVEFPE 260
Cdd:PLN00113 397 PKSLGA-CRSLRRVRLQDNSFSGELPSEFTKLPLvYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK 475

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 19110474  261 SLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIP 301
Cdd:PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
111-317 4.14e-17

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 81.52  E-value: 4.14e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474 111 PAIAKLKNLKTLRISWTNISgPVPDFISQLTNLTFLELSFNNLSgTIPSSLSKLQKLGALHLDRNKLTgSIPESFGTFTG 190
Cdd:COG4886 130 EELANLTNLKELDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQLT-DLPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTN 206

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474 191 STpDLYLSHNQLSgKIPASLGSMDF-NTIDLSRNKLEgDASFLIGLNKTTqRIDVSRNLLEfNLSKVEFPESLTNLDLNH 269
Cdd:COG4886 207 LE-ELDLSGNQLT-DLPEPLANLTNlETLDLSNNQLT-DLPELGNLTNLE-ELDLSNNQLT-DLPPLANLTNLKTLDLSN 281

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 19110474 270 NKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHN 317
Cdd:COG4886 282 NQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLL 329
PLN03150 PLN03150
hypothetical protein; Provisional
 131-211 3.25e-13

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 70.23  E-value: 3.25e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  131 GPVPDFISQLTNLTFLELSFNNLSGTIPSSLSKLQKLGALHLDRNKLTGSIPESFGTFTgSTPDLYLSHNQLSGKIPASL 210
Cdd:PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT-SLRILNLNGNSLSGRVPAAL 510


                 .
gi 19110474  211 G 211
Cdd:PLN03150 511 G 511
PLN03150 PLN03150
hypothetical protein; Provisional
 105-186 4.15e-12

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 66.76  E-value: 4.15e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  105 LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPSSLSKLQKLGALHLDRNKLTGSIPES 184
Cdd:PLN03150 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509


                 ..
gi 19110474  185 FG 186
Cdd:PLN03150 510 LG 511
PLN03150 PLN03150
hypothetical protein; Provisional
 148-227 5.46e-12

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 66.38  E-value: 5.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  148 LSFNN--LSGTIPSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPdLYLSHNQLSGKIPASLGSM-DFNTIDLSRNK 224
Cdd:PLN03150 423 LGLDNqgLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV-LDLSYNSFNGSIPESLGQLtSLRILNLNGNS 501


                 ...
gi 19110474  225 LEG 227
Cdd:PLN03150 502 LSG 504
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
64-290 6.47e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 63.03  E-value: 6.47e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  64 DLSTNRINSLTIFAGDLPG------------QIPSEVGDLPYLETLmfhklpSLTG----PIQPAIAKLKNLKTLRISWT 127
Cdd:COG4886 142 DLSNNQLTDLPEPLGNLTNlksldlsnnqltDLPEELGNLTNLKEL------DLSNnqitDLPEPLGNLTNLEELDLSGN 215

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474 128 NISgPVPDFISQLTNLTFLELSFNNLSgTIPSsLSKLQKLGALHLDRNKLTgSIPESFGTftGSTPDLYLSHNQLSGKIP 207
Cdd:COG4886 216 QLT-DLPEPLANLTNLETLDLSNNQLT-DLPE-LGNLTNLEELDLSNNQLT-DLPPLANL--TNLKTLDLSNNQLTDLKL 289

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474 208 ASLGSMDFNTIDLSRNKLEGDASFLIGLNKTTQRIDVSRNLLEFNLSKVEFPESLTNLDLNHNKIFGSIPAQITSLENLG 287
Cdd:COG4886 290 KELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTL 369


                ...
gi 19110474 288 FLN 290
Cdd:COG4886 370 GLL 372
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 26-64 4.13e-10

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 54.22  E-value: 4.13e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 19110474    26 NPNDKKVLLKFKKALNNP-YVLASWNPK-TDCCDWYCVTCD 64
Cdd:pfam08263   1 LNDDGQALLAFKSSLNDPpGALSSWNSSsSDPCSWTGVTCD 41
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
64-267 7.55e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 56.48  E-value: 7.55e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474  64 DLSTNRINSLTIFAGDLPG------------QIPSEVGDLPYLETLMFH--KLPSLTGPIqpaiAKLKNLKTLRISWTNI 129
Cdd:COG4886 165 DLSNNQLTDLPEELGNLTNlkeldlsnnqitDLPEPLGNLTNLEELDLSgnQLTDLPEPL----ANLTNLETLDLSNNQL 240

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474 130 SgPVPDfISQLTNLTFLELSFNNLSgTIPSsLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPAS 209
Cdd:COG4886 241 T-DLPE-LGNLTNLEELDLSNNQLT-DLPP-LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLIL 316

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 19110474 210 LGSMDFNTIDLSRNKLEGDASFLIGLNKTTQRIDVSRNLLEFNLSKVEFPESLTNLDL 267
Cdd:COG4886 317 LLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGL 374
PLN03150 PLN03150
hypothetical protein; Provisional
 27-161 9.76e-09

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 56.36  E-value: 9.76e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474   27 PNDKKVLLKFKKALNNPYVLAsWNpkTDCC-----DWYCVTCDLSTNR----INSLTIFAGDLPGQIPSEVGDLPYLETL 97
Cdd:PLN03150 371 LEEVSALQTLKSSLGLPLRFG-WN--GDPCvpqqhPWSGADCQFDSTKgkwfIDGLGLDNQGLRGFIPNDISKLRHLQSI 447

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19110474   98 MFHKlPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPSSL 161
Cdd:PLN03150 448 NLSG-NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
LRR_8 pfam13855
Leucine rich repeat;
141-202 5.80e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.50  E-value: 5.80e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 19110474   141 TNLTFLELSFNNLSGTIPSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPdLYLSHNQL 202
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRY-LDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
118-177 4.04e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 35.19  E-value: 4.04e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474   118 NLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPSSLSKLQKLGALHLDRNKL 177
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
151-296 4.79e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 38.38  E-value: 4.79e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19110474 151 NNLSGTIPSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDAS 230
Cdd:COG4886   1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 19110474 231 FLIGLNKTTQRIDVSRNLLEFNLSKVEFPESLTN---LDLNHNKIfGSIPAQITSLENLGFLNVSYNRL 296
Cdd:COG4886  81 LLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNlesLDLSGNQL-TDLPEELANLTNLKELDLSNNQL 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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