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Conserved domains on  [gi|14028434|dbj|BAB54986|]
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permease of ABC transporter (plasmid) [Mesorhizobium japonicum MAFF 303099]

Protein Classification

ABC transporter permease( domain architecture ID 10003093)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0055085|GO:0140359|GO:0042626|GO:0016020
PubMed:  31571164|27273632|26517919|18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-275 5.06e-66

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


:

Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 207.31  E-value: 5.06e-66
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   1 MPAHRIKINPIVLAAAPGIALLVIFFAIPLANLTVRSLTD--------PEFGLGNYKAVLGSQTYLRVGWRTIWISFLAM 72
Cdd:COG1176   1 MSAALRRRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTrdpyggvvPGFTLENYARLFTDPLYLKVLLRTLWIALLTT 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  73 SGCVLIGTPVAYAIAHSKRRALVVATLAVLgLSFLTSSLIRAFAWMILFGAQGPIVAILNAAGLDVH--TLLATQVAVVV 150
Cdd:COG1176  81 LICLLLGYPIAYFLARAPPRWRNLLLLLVI-LPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEplRLLYTEFAVVI 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 151 GMIHFLLPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGPSEMM 230
Cdd:COG1176 160 GLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLM 239

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*
gi 14028434 231 LGQLIAISISKFGDFGFAAAAGVLLMVITLFLLSAVQWVFRAGQR 275
Cdd:COG1176 240 IGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRL 284
 
Name Accession Description Interval E-value
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-275 5.06e-66

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 207.31  E-value: 5.06e-66
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   1 MPAHRIKINPIVLAAAPGIALLVIFFAIPLANLTVRSLTD--------PEFGLGNYKAVLGSQTYLRVGWRTIWISFLAM 72
Cdd:COG1176   1 MSAALRRRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTrdpyggvvPGFTLENYARLFTDPLYLKVLLRTLWIALLTT 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  73 SGCVLIGTPVAYAIAHSKRRALVVATLAVLgLSFLTSSLIRAFAWMILFGAQGPIVAILNAAGLDVH--TLLATQVAVVV 150
Cdd:COG1176  81 LICLLLGYPIAYFLARAPPRWRNLLLLLVI-LPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEplRLLYTEFAVVI 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 151 GMIHFLLPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGPSEMM 230
Cdd:COG1176 160 GLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLM 239

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*
gi 14028434 231 LGQLIAISISKFGDFGFAAAAGVLLMVITLFLLSAVQWVFRAGQR 275
Cdd:COG1176 240 IGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRL 284
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 43-263 5.88e-20

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 87.05  E-value: 5.88e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   43 FGLGNYkAVLGSQTYLRVGWRTIWISFLAMSGCVLIGTPVAYAIA--HSKRRALVvatLAVLGLSFLTSSLIRAFAWMIL 120
Cdd:PRK09497  48 FTLDNY-TRLLDPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAklPHKVRPLL---LFLLIVPFWTNSLIRIYGLKIF 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  121 FGAQGPIVAILNAAGL--DVHTLLATQVAVVVGMIHFLLPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLA 198
Cdd:PRK09497 124 LSTKGYLNEFLLWLGVidTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLT 203

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 14028434  199 LPSIINAGSLVFVIALGFFITPALLGGPSEMMLGQLIAISISKFGDFGFAAAAGVLLMVITLFLL 263
Cdd:PRK09497 204 MPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKSQFLNIRDWPFGAATSITLTIVMGLML 268
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 19-271 1.40e-10

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 61.23  E-value: 1.40e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434    19 IALLVIFFAIPLANLTVRSLTDPE---FGLGNYKAVLGSQTYLRVGWRTIWISFLAMSGCVLIGTPVAYAIAHS----KR 91
Cdd:TIGR03262  11 ILALLLFLLLPLLALLTKSVYDSDgdfIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSripgKG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434    92 RALVVATLAVLGlsfltSSLIRAFAWMILFGAQGPIVAILNAAGLdvhtllATQVAVVVGMIHFLLPIYALTAFAGFRNM 171
Cdd:TIGR03262  91 AFRLVALLPLLA-----PSLLPAISLIYLFGNQGLLKGLLGGFSI------YGFWGIVIGEVFYTFPHALMILVTALSLA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   172 PFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGPSEMMlgqliAISISKF----GDFGF 247
Cdd:TIGR03262 160 DGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVL-----ATDIYKQvigqQNFPM 234

                         250       260
                  ....*....|....*....|....
gi 14028434   248 AAAAGVLLMVITLFLLSAVQWVFR 271
Cdd:TIGR03262 235 GAVVGVLLLLPALLAFGIDRAIQR 258
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 62-262 1.78e-07

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 50.35  E-value: 1.78e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  62 WRTIWISFLAMSGCVLIGTPVAYAIAhSKRRALVVATLAVLGLSFLTSSLIRAFAWMILFGAQGPIVAILNAAgldvhtl 141
Cdd:cd06261   2 LNTLLLALIATLLALVLGLLLGIILA-RKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLG------- 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 142 latqVAVVVGMIHFLLPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPA 221
Cdd:cd06261  74 ----LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVS 149

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 14028434 222 LLGGPSEMMLGQLIAISISKFGDFGFAAAAGVLLMVITLFL 262
Cdd:cd06261 150 FLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 147-267 1.45e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.60  E-value: 1.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   147 AVVVGMIHFLLPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGP 226
Cdd:pfam00528  54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW 133

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 14028434   227 SEMMLGQLIAISISKFGDFGFAAAAGVLLMVITLFLLSAVQ 267
Cdd:pfam00528 134 PGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQ 174
 
Name Accession Description Interval E-value
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-275 5.06e-66

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 207.31  E-value: 5.06e-66
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   1 MPAHRIKINPIVLAAAPGIALLVIFFAIPLANLTVRSLTD--------PEFGLGNYKAVLGSQTYLRVGWRTIWISFLAM 72
Cdd:COG1176   1 MSAALRRRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTrdpyggvvPGFTLENYARLFTDPLYLKVLLRTLWIALLTT 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  73 SGCVLIGTPVAYAIAHSKRRALVVATLAVLgLSFLTSSLIRAFAWMILFGAQGPIVAILNAAGLDVH--TLLATQVAVVV 150
Cdd:COG1176  81 LICLLLGYPIAYFLARAPPRWRNLLLLLVI-LPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEplRLLYTEFAVVI 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 151 GMIHFLLPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGPSEMM 230
Cdd:COG1176 160 GLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLM 239

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*
gi 14028434 231 LGQLIAISISKFGDFGFAAAAGVLLMVITLFLLSAVQWVFRAGQR 275
Cdd:COG1176 240 IGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRL 284
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-274 5.38e-29

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 114.87  E-value: 5.38e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   1 MPAHRIKINPIVLAAApgIALLVIFFAIPLANLTVRSLTDpefGLGNYKAVLGSQTYLRVGWRTIWISFLAMSGCVLIGT 80
Cdd:COG1178   1 MSTRPRRRPRLLLLLL--ALLLALLVLLPLLALLLRAFTD---GLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGV 75

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  81 PVAYAIAHSK---RRALVVATLavlgLSFLTSSLIRAFAWMILFGAQGPIVAILNAAGLDVHTLLATQVAVVVGMIHFLL 157
Cdd:COG1178  76 PLAWLLARTDfpgRRLLRWLLL----LPLALPPYVVALAWIALFGPNGLLNTLLRALFGLEPPDIYGLGGIILVLVLFNY 151

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 158 PIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGPSEmMLGQLIAI 237
Cdd:COG1178 152 PYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYT-TLTTAIYQ 230

                       250       260       270
                ....*....|....*....|....*....|....*..
gi 14028434 238 SISKFGDFGFAAAAGVLLMVITLFLLSAVQWVFRAGQ 274
Cdd:COG1178 231 AWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRR 267
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 19-276 3.64e-23

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 95.18  E-value: 3.64e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  19 IALLVIFFAIPLANLTVRSLTD--------PEFGLGNYKAVLGSQTYLRVGWRTIWISFLAMSGCVLIGTPVAYAIAHSK 90
Cdd:COG1177  13 LALVLLFLYLPILVLVLYSFNDswfltfppEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYR 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  91 RRALVVATLAVLgLSFLTSSLIRAFAWMILFGAQGpivailnaagldvhtLLATQVAVVVGMIHFLLPIYALTAFAGFRN 170
Cdd:COG1177  93 FRGRRLLLALLL-LPLVVPGIVLGVALLLLFSALG---------------LSGGLWGLILAHVVFTLPFVVLVVLARLQG 156

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 171 MPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGPSEMMLGQLIAISIsKFGDFGFAAA 250
Cdd:COG1177 157 FDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMI-RRGISPEINA 235

                       250       260
                ....*....|....*....|....*.
gi 14028434 251 AGVLLMVITLFLLSAVQWVFRAGQRQ 276
Cdd:COG1177 236 LSTLLILLSLLLLLLAERLRRRGERR 261
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
16-271 3.84e-21

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 90.19  E-value: 3.84e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  16 APGIALLVIFFAIPLANLTVRSLTD-------PEF-GLGNYKAVLGSQTYLRVGWRTIWISFLAMSGCVLIGTPVAYAIa 87
Cdd:COG1175  25 LPALLLLLVFVLYPLLYTLYLSFTDwnllgppPEFvGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLL- 103

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  88 HSKRRALVVATLAVLgLSFLTSSLIRAFAWMILFGAQ-GPIVAILNAAGLDVHTLLATQ----VAVVVGMIHFLLPIYAL 162
Cdd:COG1175 104 NRKLRGRGFFRTLFF-LPWVISPVVVALIWKWLFNPDyGLLNALLGALGLEPINWLGDPslalPAVIIVTVWKGTGFNML 182

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 163 TAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALL--GGP--SEMMLGQLIAIS 238
Cdd:COG1175 183 IFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLtgGGPgnSTTTLVLYIYQT 262

                       250       260       270
                ....*....|....*....|....*....|...
gi 14028434 239 ISKFGDFGFAAAAGVLLMVITLFLLSAVQWVFR 271
Cdd:COG1175 263 AFQQFDFGYASAIAVVLFLIILVLTLLQLRLLR 295
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 43-263 5.88e-20

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 87.05  E-value: 5.88e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   43 FGLGNYkAVLGSQTYLRVGWRTIWISFLAMSGCVLIGTPVAYAIA--HSKRRALVvatLAVLGLSFLTSSLIRAFAWMIL 120
Cdd:PRK09497  48 FTLDNY-TRLLDPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAklPHKVRPLL---LFLLIVPFWTNSLIRIYGLKIF 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  121 FGAQGPIVAILNAAGL--DVHTLLATQVAVVVGMIHFLLPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLA 198
Cdd:PRK09497 124 LSTKGYLNEFLLWLGVidTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLT 203

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 14028434  199 LPSIINAGSLVFVIALGFFITPALLGGPSEMMLGQLIAISISKFGDFGFAAAAGVLLMVITLFLL 263
Cdd:PRK09497 204 MPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKSQFLNIRDWPFGAATSITLTIVMGLML 268
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 45-276 1.14e-19

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 86.69  E-value: 1.14e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   45 LGNYKAVLGSQTYLRVGWRTIWISFLAMSGCVLIGTPVAYAIAHSKRRALVVATLAVLgLSFLTSSLIRAFAWMILFGAQ 124
Cdd:PRK10683  83 LGNFLQLTDDPLYFDAYLQSLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVI-LPSWTSFLIRVYAWMGILKNN 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  125 GPIVAILNAAGLDVH--TLLATQVAVVVGMIHFLLPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSI 202
Cdd:PRK10683 162 GVLNNFLLWLGVIDQplTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGI 241

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 14028434  203 INAGSLVFVIALGFFITPALLGGPSEMMLGQLIAISISKFGDFGFAAAagvLLMVITLFLLSAVQWVFRAGQRQ 276
Cdd:PRK10683 242 IAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQEFFNNRDWPVASA---VAIIMLLLLIVPIMWFHKHQQKS 312
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
13-271 4.05e-19

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 86.75  E-value: 4.05e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  13 LAAAPGIALLVIFFAIPLANLTVRSLT---DPEFGLGNYKAVLGSQTYLRVGWRTIWISFLAMSGCVLIGTPVAYAIAHS 89
Cdd:COG1178 289 LALALCLLLVLLGLLLPLLALLLWSLTkalDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRR 368

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  90 KRRALVVATLAVLgLSFLTSSLIRAFAWMILFGAQGPIVailnaagldvhtLLATQVAVVVGMIHFLLPIYALTAFAGFR 169
Cdd:COG1178 369 RGRLARLLDRLAM-LPYAVPGIVLGLGLLLLFNRPLPLL------------LYGTLAILVLAYVVRFLPFALRSLEAALA 435

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 170 NMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGPSEMMLGQLIAISISKfGDFGFAA 249
Cdd:COG1178 436 QIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASS-GRYGEAA 514

                       250       260
                ....*....|....*....|..
gi 14028434 250 AAGVLLMVITLFLLSAVQWVFR 271
Cdd:COG1178 515 ALALLLVLVSLLPVLLLERLLG 536
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 19-275 6.49e-19

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 83.65  E-value: 6.49e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  19 IALLVIFFAIPLANLTVRSLTdpeFGLGNYKAVLGSQTYLRVGWRTIWISFLAMSGCVLIGTPVAYAIAhskRRALVVAT 98
Cdd:COG0555  17 LLYLSLIVLLPLAALVLKAAG---LGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLV---RYRFPGKR 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  99 L--AVLGLSFLTSSLIRAFAWMILFGAQGPIVAILNAAGLDVhtlLATQVAVVVGMIHFLLPIYALTAFAGFRNMPFDLV 176
Cdd:COG0555  91 LvdALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIKV---AFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELE 167

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 177 VAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGPSEM---MLGQLIAISISKFgDFGFAAAAGV 253
Cdd:COG0555 168 EAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMkteILPLLIYLKLEEG-DYAGATAIAL 246

                       250       260
                ....*....|....*....|..
gi 14028434 254 LLMVITLFLLSAVQWVFRAGQR 275
Cdd:COG0555 247 VLLLISFLLLLLINLLQRRSRR 268
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 2-271 3.00e-18

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 82.36  E-value: 3.00e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434    2 PAHRIKINPIVLAAAPGIALLVIFFAIPLANLTVRSLTDPE-FGLGNYKAVLGSQTYLRVGWRTIWISFLAMSGCVLIGT 80
Cdd:PRK15050  15 AARRRRRLRPLLWLLLPLLVLAPLVVYPLVRVVLQSLTGEHgLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGV 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   81 PVAYAIAHSK-RRALVVATLAVLGLSFltSSLIRAFAWMILFGAQGPI-VAILNAAGLDVHTL--LATQVAVVVGMIHFL 156
Cdd:PRK15050  95 LLALVLAFVPfPGASLVGRFIDTFVAF--PSFLITLAFTFLYGSAGSVnIALQRLFGLEAPPLdfLYSPGGVILAEITFY 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  157 LPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGPSEMMLGQLIA 236
Cdd:PRK15050 173 TPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIY 252

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 14028434  237 ISISKFGDFGFAAAAGVLLMVITLFLLSAVQWVFR 271
Cdd:PRK15050 253 SKAIVDFDYPTACAIAVVNLALSLGLYALYRRVNR 287
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 62-276 3.34e-13

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 67.00  E-value: 3.34e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  62 WRTIWISFLAMSGCVLIGTPVAYAIAHSKRR------ALVVATL----AVLGlsfltssliraFAWMILFGAQGPIVAIL 131
Cdd:COG4149  10 WLSLKVALIATLLLLLLGIPLAWWLARTRFRgkglleALVTLPLvlppTVLG-----------FYLLLLFGRNGPLGQLL 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 132 NAAGLdvHTLLATQVAVVVGMIHFLLPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFV 211
Cdd:COG4149  79 EELFG--ISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFA 156

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 14028434 212 IALG-FFITpallggpseMMLG-------QLIAISISKF---GDFGFAAAAGVLLMVITLFLLSAVQWVFRAGQRQ 276
Cdd:COG4149 157 RALGeFGAT---------LMFAgnipgktQTLPLAIYDAveaGDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-267 9.75e-11

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 60.88  E-value: 9.75e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   2 PAHRIKINPIVLAAApgIALLVIFFAIPLANLTVRSLTDP-------------EFGLGNYKAVLGSQTYLRVGWRTIWIS 68
Cdd:COG0395   6 RRRRRRLGRILLYLL--LILLALLFLFPLYWMVVTSFKPPaeifsgppsllpsEFTLENYRAAFTDGPFGRYLLNSLIVA 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  69 FLAMSGCVLIGTPVAYAIAHSKRRALVVATLAVLGLSFLTSSLIrafawMIlfgaqgPIVAILNAAGldvhtLLATQVAV 148
Cdd:COG0395  84 VVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVL-----LI------PLYLLFRQLG-----LLNTYWGL 147

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 149 VVGMIHFLLPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGPSE 228
Cdd:COG0395 148 ILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPD 227

                       250       260       270       280
                ....*....|....*....|....*....|....*....|.
gi 14028434 229 MM-LGQLIAISISKFG-DFGFAAAAGVLLMVITLFLLSAVQ 267
Cdd:COG0395 228 LRtLPVGLASFQGQYGtDWGLLMAAAVIATLPVLILFLFLQ 268
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 19-271 1.40e-10

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 61.23  E-value: 1.40e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434    19 IALLVIFFAIPLANLTVRSLTDPE---FGLGNYKAVLGSQTYLRVGWRTIWISFLAMSGCVLIGTPVAYAIAHS----KR 91
Cdd:TIGR03262  11 ILALLLFLLLPLLALLTKSVYDSDgdfIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSripgKG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434    92 RALVVATLAVLGlsfltSSLIRAFAWMILFGAQGPIVAILNAAGLdvhtllATQVAVVVGMIHFLLPIYALTAFAGFRNM 171
Cdd:TIGR03262  91 AFRLVALLPLLA-----PSLLPAISLIYLFGNQGLLKGLLGGFSI------YGFWGIVIGEVFYTFPHALMILVTALSLA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   172 PFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGPSEMMlgqliAISISKF----GDFGF 247
Cdd:TIGR03262 160 DGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVL-----ATDIYKQvigqQNFPM 234

                         250       260
                  ....*....|....*....|....
gi 14028434   248 AAAAGVLLMVITLFLLSAVQWVFR 271
Cdd:TIGR03262 235 GAVVGVLLLLPALLAFGIDRAIQR 258
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 21-271 1.26e-08

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 54.22  E-value: 1.26e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   21 LLVIFFAIPLANLTVRSLTDPEFGLGN-------YKAVLGSQTYLRVGWRTIWISFLAMSGCVLIGTPVAYAIA--HSKR 91
Cdd:PRK09500  12 LVYAYLYIPIIILIVNSFNSSRFGINWkgfttkwYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYryRFRG 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   92 RALVVATLAVLGLSFLTSSLIRAFAWMILFGAQgpivailnaagLDVHTLLATQvavvvgmIHFLLPIYALTAFAGFRNM 171
Cdd:PRK09500  92 KKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQ-----------LGFWSLLFAH-------ITFCLPFVVVTVYSRLKGF 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  172 PFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGPSEMMLgQLIAISISKFGDFGFAAAA 251
Cdd:PRK09500 154 DVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEIL-PLKIYSMVKVGVSPEVNAL 232

                        250       260
                 ....*....|....*....|
gi 14028434  252 GVLLMVITLFLLSAVQWVFR 271
Cdd:PRK09500 233 ATILLVLSLVLVILSQLLAR 252
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 62-262 1.78e-07

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 50.35  E-value: 1.78e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  62 WRTIWISFLAMSGCVLIGTPVAYAIAhSKRRALVVATLAVLGLSFLTSSLIRAFAWMILFGAQGPIVAILNAAgldvhtl 141
Cdd:cd06261   2 LNTLLLALIATLLALVLGLLLGIILA-RKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLG------- 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 142 latqVAVVVGMIHFLLPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPA 221
Cdd:cd06261  74 ----LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVS 149

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 14028434 222 LLGGPSEMMLGQLIAISISKFGDFGFAAAAGVLLMVITLFL 262
Cdd:cd06261 150 FLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
75-262 6.24e-07

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 49.71  E-value: 6.24e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   75 CVLIGTPVAYAIAHSKRRALVVATLavLGLSFLTSSLIRAFAWMILFGaqgpivaILNAAGldvhtllatqvaVVVGMIH 154
Cdd:PRK10952 160 CIVIGLPLGIWLARSPRAAKIIRPL--LDAMQTTPAFVYLVPIVMLFG-------IGNVPG------------VVVTIIF 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  155 FLLPIYALTAFaGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALL--GGpsemmLG 232
Cdd:PRK10952 219 ALPPIVRLTIL-GINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIavGG-----LG 292

                        170       180       190
                 ....*....|....*....|....*....|
gi 14028434  233 QLIAISISKFgDFGFAAAAGVLLMVITLFL 262
Cdd:PRK10952 293 QMVLRGIGRL-DMGLATVGGVGIVILAIIL 321
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 147-267 1.45e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.60  E-value: 1.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   147 AVVVGMIHFLLPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGP 226
Cdd:pfam00528  54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW 133

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 14028434   227 SEMMLGQLIAISISKFGDFGFAAAAGVLLMVITLFLLSAVQ 267
Cdd:pfam00528 134 PGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQ 174
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 11-263 4.97e-05

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 43.60  E-value: 4.97e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  11 IVLAAAPGIALLVIFFAI-----PLANLTVRSLTDPEFGLGNYKAVLGSQTYLRVGWRTIWISFLAMSGCVLIGTPVAYA 85
Cdd:COG3833  20 LVLIILAIIALFPILWVVsasfnPGGSLYSSSLIPENFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYA 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  86 IAHSK---RRALVvatlavlgLSFLTSSLIRAFAWMIlfgaqgPIVAILNAAG-LDVHT-LLATQVAVVVGMIHFLLPIY 160
Cdd:COG3833 100 FSRFRfkgRKAGL--------LALLLLQMFPAFLALV------ALYLLLSALGlLNTLLgLILVYLGGAIPFNTWLMKGY 165

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 161 altafagFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGGPSEMM-----LGQLI 235
Cdd:COG3833 166 -------FDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYtlavgLYSFV 238

                       250       260       270
                ....*....|....*....|....*....|.
gi 14028434 236 AISISK-FGDFgfaAAAGVLLM--VITLFLL 263
Cdd:COG3833 239 SDQRNTnWGVF---AAGAVLVAipIVILFLF 266
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 13-269 6.17e-05

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 44.06  E-value: 6.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   13 LAAAPGIALLVIFFAIPLANLTVRSltdpefGLGNYKAVLGSQTYLRVGWRTIWISFLAMSGCVLIGTPVAYAIA--HSK 90
Cdd:PRK09433   4 IPGVLAAALLVALALLALLALWLHA------PGGDWDAVWQDSYLWHVLRFSFWQAFLSALLSVLPAIPLARALYrrRFP 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   91 RRALVvatLAVLGLSFLTSSLIRAFAWMILFGAQGPIVAILNAAGLDVHTLLATQVAVVVGMIHFLLPIYALTAFAGFRN 170
Cdd:PRK09433  78 GRGLL---LRLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLLQALGLEWPFSIYGLQGILLAHVFFNLPLATRLLLQALES 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  171 MPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITP-ALLGGPSEMMLGQLIAISISKFGDFGFAA 249
Cdd:PRK09433 155 IPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLPPVAALIFMLCFTSFATVlTLGGGPKATTIELAIYQALSFDFDLARAA 234

                        250       260
                 ....*....|....*....|
gi 14028434  250 AAGVLLMVITLFLLSAVQWV 269
Cdd:PRK09433 235 LLALLQMVLCLGLVLLSQRL 254
cysT CHL00187
sulfate transport protein; Provisional
 99-225 1.25e-04

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 42.31  E-value: 1.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   99 LAVLGLSFLTSSLIRAFAWMILFGAQGPIVAILNAAGLdvhTLLATQVAVVVGMIHFLLPIYALTAFAGFRNMPFDLVVA 178
Cdd:CHL00187  94 DAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLGI---QIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEA 170

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 14028434  179 AEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITPALLGG 225
Cdd:CHL00187 171 AWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISS 217
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 64-276 2.76e-04

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 41.61  E-value: 2.76e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  64 TIWISFLAMsgcvLIGTPVAYAIA-------HSKRRALVVATLAVL-----------GLSFLTSSLIRAFAWMilfgaqG 125
Cdd:COG0573  82 TLLVSLIAL----LIAVPLGLGIAiflseyaPPRLRRILKPAIELLagipsvvygfwGLFVLVPLLRDLFPWP------P 151

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 126 PIVAILNAAgldvhtllatqvaVVVG-MIhflLPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIIN 204
Cdd:COG0573 152 SGFSLLTAG-------------IVLAiMI---LPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIA 215

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 205 AGSLVFVIALGFFITPALLGGPSEMM----------LGQLIAISI--SKFGDFGFAA--AAGVLLMVITLFLLSAVQWVF 270
Cdd:COG0573 216 AVILGLGRALGETMAVLMVAGNAPQIpfslfdpgrtLTALIALEFgeAPFGSLHYSAlfALGLVLFVITLLVNLLARLIV 295


                ....*.
gi 14028434 271 RAGQRQ 276
Cdd:COG0573 296 RRYREK 301
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 64-274 6.97e-04

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 40.67  E-value: 6.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434    64 TIWISFLAMSGCVLIGTPVAYAIaHSKRRALVVATLAVLGLSFLTSSLIRAFAWMILFGAQGPIVAILNAAGLDVHTLLA 143
Cdd:TIGR01253  52 SFGQAFLSALLSIFFAIFLARAL-FRKPFLGKKALLKLCALTFILPALVAIFGIIGIYGRQGWLATLANLFGLEWQFHIY 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434   144 TQVAVVVGMIHFLLPIYALTAFAGFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGFFITP-AL 222
Cdd:TIGR01253 131 GLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASFATVlSL 210

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 14028434   223 LGGPSEMMLGQLIAISISKFGDFGFAAAAGVLLMVITLFLLSAVQWVFRAGQ 274
Cdd:TIGR01253 211 GGGPQATTIELAIYQAILFDFDLAKAALFALLQFVCCLGLFLLSQRFSKAIA 262
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 62-216 2.67e-03

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 38.11  E-value: 2.67e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434  62 WRTIWISFLAMSGCVLIGTPVAYAIAHSKRRALVVATLAVLGLSFLTSsLIRAFAWMILfgaqgpIVAILNAAGLDVHTL 141
Cdd:COG2011  17 GETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVN-IFRSIPFIIL------LVALIPLTRLIVGTS 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14028434 142 LATQVAVVVgmihflLPIYALTAFA-----GFRNMPFDLVVAAEGLGASRWYALRTVYFPLALPSIINAGSLVFVIALGF 216
Cdd:COG2011  90 IGTTAAIVP------LTIAAIPFFArlvenALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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