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Conserved domains on  [gi|12855472|dbj|BAB30347|]
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unnamed protein product [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RNase_P_Rpp14 super family cl00605
Rpp14/Pop5 family; tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule ...
 28-106 2.00e-06

Rpp14/Pop5 family; tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40. This protein is known as Pop5 in eukaryotes.


The actual alignment was detected with superfamily member pfam01900:

Pssm-ID: 469837  Cd Length: 102  Bit Score: 42.88  E-value: 2.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12855472    28 EHGVGLNVAQFKQLLVSALRDLFGEVGAA---LPVDVLTYDEKTLSAILRICSSGLVKLWSSLTLFGAYKSKKCAFRVIQ 104
Cdd:pfam01900  10 PDDTPLSRKSLLKAIRDSVQELFGDFGAGaagPSLQVKYFSPATGTGIIRCRREHYRLVWAALTLITSIGGRPVIFRVLH 89


                  ..
gi 12855472   105 VS 106
Cdd:pfam01900  90 VS 91
 
Name Accession Description Interval E-value
RNase_P_Rpp14 pfam01900
Rpp14/Pop5 family; tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule ...
 28-106 2.00e-06

Rpp14/Pop5 family; tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40. This protein is known as Pop5 in eukaryotes.


Pssm-ID: 460379  Cd Length: 102  Bit Score: 42.88  E-value: 2.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12855472    28 EHGVGLNVAQFKQLLVSALRDLFGEVGAA---LPVDVLTYDEKTLSAILRICSSGLVKLWSSLTLFGAYKSKKCAFRVIQ 104
Cdd:pfam01900  10 PDDTPLSRKSLLKAIRDSVQELFGDFGAGaagPSLQVKYFSPATGTGIIRCRREHYRLVWAALTLITSIGGRPVIFRVLH 89


                  ..
gi 12855472   105 VS 106
Cdd:pfam01900  90 VS 91
 
Name Accession Description Interval E-value
RNase_P_Rpp14 pfam01900
Rpp14/Pop5 family; tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule ...
 28-106 2.00e-06

Rpp14/Pop5 family; tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40. This protein is known as Pop5 in eukaryotes.


Pssm-ID: 460379  Cd Length: 102  Bit Score: 42.88  E-value: 2.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12855472    28 EHGVGLNVAQFKQLLVSALRDLFGEVGAA---LPVDVLTYDEKTLSAILRICSSGLVKLWSSLTLFGAYKSKKCAFRVIQ 104
Cdd:pfam01900  10 PDDTPLSRKSLLKAIRDSVQELFGDFGAGaagPSLQVKYFSPATGTGIIRCRREHYRLVWAALTLITSIGGRPVIFRVLH 89


                  ..
gi 12855472   105 VS 106
Cdd:pfam01900  90 VS 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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