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Conserved domains on  [gi|11559475|dbj|BAB18788|]
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GspD [Burkholderia cepacia]

Protein Classification

type II secretion system protein D( domain architecture ID 11494410)

type II secretion system protein D is involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins

CATH:  3.30.1370.120|3.55.50.30
Gene Ontology:  GO:0009279|GO:0015627|GO:0015628
PubMed:  30767847
TCDB:  1.B.22.1.3

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 32-685 0e+00

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


:

Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 656.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475    32 LNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPVPEDQALKTLQSALRMQGFALVQ-DHGVLKVVPEADAKLQ 110
Cdd:TIGR02517   1 LNFVDADISTVVKAISDLTGKNFIIDPRVKGKITIISPRPVTEDEAYQLFLSALRAQGFAVVPeGNGYKIVVPRAAAKLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   111 GVPTYIGNAPQARGDQVITQVFELHNESANNLLPVLRPLISPNNTVTAYPANNTIVVTDYADNVRRIAQIISGVDSAAGA 190
Cdd:TIGR02517  81 PGPIEDGPAPGVGGDQFVTRVFPLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQLDVDGAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   191 QVQVVPLRNANAIDLAAQLQKMLDPGaiGNSDATLKVSVTADPRTNALLLRASNASRLAAAKRLVQQLDAPSAVPGNMHV 270
Cdd:TIGR02517 161 SVEVIPLKNASAVDIADVLNKLLGEG--GKTDGGGKLSVIAPDRRNNILIRAGSPEALERIKKLISQLDVPASEGGNVRV 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   271 VPLRNADAVKLAKTLRGMLGKGGNDSGSSASSNDANSFNqNGGSSASGNFSTGTSGTPPLPsgglggsssssyggsggss 350
Cdd:TIGR02517 239 YYLRNADAEELAKTLQGVFGGGGNEPGSSSSPGLGGAVN-PGGSQSAQAASSASGGSVSGS------------------- 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   351 ggglgtggllggdkdksgddnqpggmiqADSATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVELNSTTQGNLG 430
Cdd:TIGR02517 299 ----------------------------ADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELG 350

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   431 IQWQvasgqfLGGTNLAPTAGNGLGNSIINLTAGGLTNaaggitggglasNLGQLSQGLNIGWLHNMFGVQG------LG 504
Cdd:TIGR02517 351 VQWL------IAGTGGGVNFSTGSPNSGSLLGASASAI------------SLGSAGIGLLVTSSSTTSGVGGtgggpnLG 412

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   505 ALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILK 584
Cdd:TIGR02517 413 VLLNALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVPVLTGSYNTGTGGTNANPFNTYQRKDVGIKLKVTPQINEGGTVR 492

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   585 LQLYTEDSAVVNGTTNS-QTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAK 663
Cdd:TIGR02517 493 LEIYQEVSSVAPTTVGSaASGPTFNKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTK 572

                         650       660
                  ....*....|....*....|..
gi 11559475   664 TNLMVFLRPVIISDRSTAQEVT 685
Cdd:TIGR02517 573 TNLMVFITPRIIRDPEDARALT 594
 
Name Accession Description Interval E-value
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 32-685 0e+00

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 656.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475    32 LNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPVPEDQALKTLQSALRMQGFALVQ-DHGVLKVVPEADAKLQ 110
Cdd:TIGR02517   1 LNFVDADISTVVKAISDLTGKNFIIDPRVKGKITIISPRPVTEDEAYQLFLSALRAQGFAVVPeGNGYKIVVPRAAAKLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   111 GVPTYIGNAPQARGDQVITQVFELHNESANNLLPVLRPLISPNNTVTAYPANNTIVVTDYADNVRRIAQIISGVDSAAGA 190
Cdd:TIGR02517  81 PGPIEDGPAPGVGGDQFVTRVFPLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQLDVDGAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   191 QVQVVPLRNANAIDLAAQLQKMLDPGaiGNSDATLKVSVTADPRTNALLLRASNASRLAAAKRLVQQLDAPSAVPGNMHV 270
Cdd:TIGR02517 161 SVEVIPLKNASAVDIADVLNKLLGEG--GKTDGGGKLSVIAPDRRNNILIRAGSPEALERIKKLISQLDVPASEGGNVRV 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   271 VPLRNADAVKLAKTLRGMLGKGGNDSGSSASSNDANSFNqNGGSSASGNFSTGTSGTPPLPsgglggsssssyggsggss 350
Cdd:TIGR02517 239 YYLRNADAEELAKTLQGVFGGGGNEPGSSSSPGLGGAVN-PGGSQSAQAASSASGGSVSGS------------------- 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   351 ggglgtggllggdkdksgddnqpggmiqADSATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVELNSTTQGNLG 430
Cdd:TIGR02517 299 ----------------------------ADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELG 350

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   431 IQWQvasgqfLGGTNLAPTAGNGLGNSIINLTAGGLTNaaggitggglasNLGQLSQGLNIGWLHNMFGVQG------LG 504
Cdd:TIGR02517 351 VQWL------IAGTGGGVNFSTGSPNSGSLLGASASAI------------SLGSAGIGLLVTSSSTTSGVGGtgggpnLG 412

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   505 ALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILK 584
Cdd:TIGR02517 413 VLLNALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVPVLTGSYNTGTGGTNANPFNTYQRKDVGIKLKVTPQINEGGTVR 492

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   585 LQLYTEDSAVVNGTTNS-QTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAK 663
Cdd:TIGR02517 493 LEIYQEVSSVAPTTVGSaASGPTFNKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTK 572

                         650       660
                  ....*....|....*....|..
gi 11559475   664 TNLMVFLRPVIISDRSTAQEVT 685
Cdd:TIGR02517 573 TNLMVFITPRIIRDPEDARALT 594
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 371-695 5.84e-94

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 296.83  E-value: 5.84e-94
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 371 NQPGGMIQADSATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVELNSTTQGNLGIQWQVASGQfLGGTNLApta 450
Cdd:COG1450  40 GAAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSDLRELGIDWSALGGN-GGGVNFG--- 115

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 451 gnglgnsiinlTAGGLTNAAGGitggglasnlGQLSQGLNIGwlhnMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNE 530
Cdd:COG1450 116 -----------GTGSLGSLAAA----------GSLGGGLNLG----LLGGGNFGALLNALESNGDANVLSSPSILTLNNQ 170

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 531 EAKIVVGQNVPIATGSYsnlTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVNGTTNSQTG-PTFTK 609
Cdd:COG1450 171 EAVIKVGQTVPYVTGST---TTSSTGNPTTTIEYVDVGITLKVTPQINEDGTVTLDINPEVSSVTGSTTGGGNGlPTINK 247

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 610 RSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVIISDRSTAQEVTsNRY 689
Cdd:COG1450 248 REISTTVRVKDGQTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTIIRDGEDAQALT-EEY 326


                ....*.
gi 11559475 690 DYIQGV 695
Cdd:COG1450 327 DRLRAL 332
Secretin pfam00263
Bacterial type II and III secretion system protein;
514-675 3.13e-51

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 175.78  E-value: 3.13e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   514 SDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTsnafntYDRRDVGLTLHVKPQITDGGILKLQLYTEDSA 593
Cdd:pfam00263   6 GKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTTTT------VEFKDAGLSLKVTPQVTPDGTITLKINPEVSS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   594 VVNGTTNSQtgPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPV 673
Cdd:pfam00263  80 PDGNGGNGV--PTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFITPR 157


                  ..
gi 11559475   674 II 675
Cdd:pfam00263 158 IV 159
IV PHA00019
phage assembly protein
 369-675 9.30e-42

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 158.05  E-value: 9.30e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  369 DDNQPGGMIQADSATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVElnsTTQGNlGIQWQVASGQFLGGtnlap 448
Cdd:PHA00019 156 SNGAPGGSVTDLPGTNSLVVSGSASQLPALADFISAIDVPRRQVLIEALIFE---TSLGD-GVDLSFAAGLASGG----- 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  449 tagnglgnsiinltaggltNAAGGITGGGLASNLGQLSQGLNIgwlhnmFGVQGLGALLQYFAGVSDANVLSTPNLITLD 528
Cdd:PHA00019 227 -------------------KVAGGFNTARLTTVLSSAGGSFGI------FNGNVLGLSVKALENSSNSRVLSRPRILTLS 281

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  529 NEEAKIVVGQNVPIATGSYSNLTSgTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVNGTTNSQTgPTfT 608
Cdd:PHA00019 282 GQSGYISVGQNVPFVTGRVTGEAA-NVNNPFQTIERKDVGVSLEVTPVVMGDGQLVLDIDTKADSLSDSTIASDI-IT-N 358

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 11559475  609 KRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVII 675
Cdd:PHA00019 359 QRSLQTTVQVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVI 425
 
Name Accession Description Interval E-value
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 32-685 0e+00

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 656.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475    32 LNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPVPEDQALKTLQSALRMQGFALVQ-DHGVLKVVPEADAKLQ 110
Cdd:TIGR02517   1 LNFVDADISTVVKAISDLTGKNFIIDPRVKGKITIISPRPVTEDEAYQLFLSALRAQGFAVVPeGNGYKIVVPRAAAKLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   111 GVPTYIGNAPQARGDQVITQVFELHNESANNLLPVLRPLISPNNTVTAYPANNTIVVTDYADNVRRIAQIISGVDSAAGA 190
Cdd:TIGR02517  81 PGPIEDGPAPGVGGDQFVTRVFPLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQLDVDGAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   191 QVQVVPLRNANAIDLAAQLQKMLDPGaiGNSDATLKVSVTADPRTNALLLRASNASRLAAAKRLVQQLDAPSAVPGNMHV 270
Cdd:TIGR02517 161 SVEVIPLKNASAVDIADVLNKLLGEG--GKTDGGGKLSVIAPDRRNNILIRAGSPEALERIKKLISQLDVPASEGGNVRV 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   271 VPLRNADAVKLAKTLRGMLGKGGNDSGSSASSNDANSFNqNGGSSASGNFSTGTSGTPPLPsgglggsssssyggsggss 350
Cdd:TIGR02517 239 YYLRNADAEELAKTLQGVFGGGGNEPGSSSSPGLGGAVN-PGGSQSAQAASSASGGSVSGS------------------- 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   351 ggglgtggllggdkdksgddnqpggmiqADSATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVELNSTTQGNLG 430
Cdd:TIGR02517 299 ----------------------------ADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELG 350

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   431 IQWQvasgqfLGGTNLAPTAGNGLGNSIINLTAGGLTNaaggitggglasNLGQLSQGLNIGWLHNMFGVQG------LG 504
Cdd:TIGR02517 351 VQWL------IAGTGGGVNFSTGSPNSGSLLGASASAI------------SLGSAGIGLLVTSSSTTSGVGGtgggpnLG 412

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   505 ALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILK 584
Cdd:TIGR02517 413 VLLNALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVPVLTGSYNTGTGGTNANPFNTYQRKDVGIKLKVTPQINEGGTVR 492

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   585 LQLYTEDSAVVNGTTNS-QTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAK 663
Cdd:TIGR02517 493 LEIYQEVSSVAPTTVGSaASGPTFNKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTK 572

                         650       660
                  ....*....|....*....|..
gi 11559475   664 TNLMVFLRPVIISDRSTAQEVT 685
Cdd:TIGR02517 573 TNLMVFITPRIIRDPEDARALT 594
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 371-695 5.84e-94

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 296.83  E-value: 5.84e-94
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 371 NQPGGMIQADSATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVELNSTTQGNLGIQWQVASGQfLGGTNLApta 450
Cdd:COG1450  40 GAAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSDLRELGIDWSALGGN-GGGVNFG--- 115

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 451 gnglgnsiinlTAGGLTNAAGGitggglasnlGQLSQGLNIGwlhnMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNE 530
Cdd:COG1450 116 -----------GTGSLGSLAAA----------GSLGGGLNLG----LLGGGNFGALLNALESNGDANVLSSPSILTLNNQ 170

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 531 EAKIVVGQNVPIATGSYsnlTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVNGTTNSQTG-PTFTK 609
Cdd:COG1450 171 EAVIKVGQTVPYVTGST---TTSSTGNPTTTIEYVDVGITLKVTPQINEDGTVTLDINPEVSSVTGSTTGGGNGlPTINK 247

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 610 RSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVIISDRSTAQEVTsNRY 689
Cdd:COG1450 248 REISTTVRVKDGQTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTIIRDGEDAQALT-EEY 326


                ....*.
gi 11559475 690 DYIQGV 695
Cdd:COG1450 327 DRLRAL 332
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 375-680 1.18e-51

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 189.68  E-value: 1.18e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 375 GMIQADSATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVELNSTTQGNLGIQWqvasgqflGGTNLAPTAGNGL 454
Cdd:COG4796 287 GSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPVRQVLIEARIVEASDSFSRELGVRW--------GGSGANGTGNNRG 358

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 455 GnsiinlTAGGLTNAAGGIT--GGGLASNLGQLSQGLNIGWlhNMFGVQGLGAL-LQYFAGVSD--ANVLSTPNLITLDN 529
Cdd:COG4796 359 G------IGGSLNGTTAGTPllPDGLNVNLPAANPAGSLGL--TLAKLGGGRLLdLELSALEAEgkGEIISSPRVITADQ 430

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 530 EEAKIVVGQNVPIATGSysnlTSGTTSNAFntydrRDVGLTLHVKPQITDGG--ILKLQLyTEDSAvvnGTTNSQTGPTF 607
Cdd:COG4796 431 QEASIEQGTEIPYQESS----SSGATSVEF-----KEAVLSLEVTPQITPDGriILDLDV-SKDSP---GETVAGGVPAI 497

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 11559475 608 TKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVIISDRST 680
Cdd:COG4796 498 DTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELLIFITPRIVKDALA 570
Secretin pfam00263
Bacterial type II and III secretion system protein;
514-675 3.13e-51

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 175.78  E-value: 3.13e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   514 SDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTsnafntYDRRDVGLTLHVKPQITDGGILKLQLYTEDSA 593
Cdd:pfam00263   6 GKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTTTT------VEFKDAGLSLKVTPQVTPDGTITLKINPEVSS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   594 VVNGTTNSQtgPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPV 673
Cdd:pfam00263  80 PDGNGGNGV--PTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFITPR 157


                  ..
gi 11559475   674 II 675
Cdd:pfam00263 158 IV 159
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 372-676 1.03e-43

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 163.64  E-value: 1.03e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   372 QPGGMIQADSATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVELNSTTQGNLGIQWQVA---------SGQFLG 442
Cdd:TIGR02515 128 SPRGSVTVDPRTNTLIVTDTPENLARIRKLIAELDIPVRQVLIEARIVEATDSFSRELGVRWGITdkngngngtAGGIGG 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   443 GTNLAPTAGNGLGNSIINLTAGglTNAAGGITGGGLASNLGQLSQGLNigwlhnmfgvqgLGALLQYFAGVSDANVLSTP 522
Cdd:TIGR02515 208 NNGTTATGAGGTGNPPFGDNLN--VNLATATTAAGISFALGKIGSGRL------------LDLELSALESEGKGEIISSP 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   523 NLITLDNEEAKIVVGQNVPIATGSysnlTSGTTSNAFntydrRDVGLTLHVKPQIT-DGGILKLQLYTEDSAVVNGTTNs 601
Cdd:TIGR02515 274 RVLTANNKEAKIEQGTEIPYQQTS----SSGATSVEF-----KEAVLSLEVTPQITpDGRIIMDLLVSKDSPGVVAQAG- 343

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 11559475   602 QTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVIIS 676
Cdd:TIGR02515 344 GGVPAIDKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPVLGNLFKKTGKSDEKSELLIFITPRIVN 418
IV PHA00019
phage assembly protein
 369-675 9.30e-42

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 158.05  E-value: 9.30e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  369 DDNQPGGMIQADSATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVElnsTTQGNlGIQWQVASGQFLGGtnlap 448
Cdd:PHA00019 156 SNGAPGGSVTDLPGTNSLVVSGSASQLPALADFISAIDVPRRQVLIEALIFE---TSLGD-GVDLSFAAGLASGG----- 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  449 tagnglgnsiinltaggltNAAGGITGGGLASNLGQLSQGLNIgwlhnmFGVQGLGALLQYFAGVSDANVLSTPNLITLD 528
Cdd:PHA00019 227 -------------------KVAGGFNTARLTTVLSSAGGSFGI------FNGNVLGLSVKALENSSNSRVLSRPRILTLS 281

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  529 NEEAKIVVGQNVPIATGSYSNLTSgTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVNGTTNSQTgPTfT 608
Cdd:PHA00019 282 GQSGYISVGQNVPFVTGRVTGEAA-NVNNPFQTIERKDVGVSLEVTPVVMGDGQLVLDIDTKADSLSDSTIASDI-IT-N 358

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 11559475  609 KRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVII 675
Cdd:PHA00019 359 QRSLQTTVQVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVI 425
pilus_MshL TIGR02519
pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, ...
 380-675 8.79e-35

pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures]


Pssm-ID: 274176 [Multi-domain]  Cd Length: 290  Bit Score: 134.43  E-value: 8.79e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   380 DSATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTnlaptagnGLGNSI 458
Cdd:TIGR02519   4 NPEAGLLTVTATPAQIRRVEEYLESLQERiHRQVLIEAKILEVTLSDNHQQGIDWSNFNGSGLARY--------KALGAA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   459 INLTAggltnaaggiTGGGLASNLGQLSqglNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQ 538
Cdd:TIGR02519  76 NSNDS----------SGNQFSSGLGFLD---NIGLPTGVNSGFGFDSIINFLATFGDTKVLSNPKVMALNNQPAVISVGD 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   539 NVPIATGSYSNLTSG---TTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVV--------NGTTNSQTGPTF 607
Cdd:TIGR02519 143 NIRYVTEESSTGTTGgttSTASSDTRVDSVFSGIVLGVTPQISDDGKVILNVHPSISEVKpqsidlnpVGNGAEVALPEI 222

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 11559475   608 TKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVII 675
Cdd:TIGR02519 223 SVKEMSSVLRVKDGDTVVLGGLIDKKKSNTKTGLPFLGDIPGLGYLFGYKSKSKKKTELVIIIRPSVV 290
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 373-675 1.03e-32

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 132.30  E-value: 1.03e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 373 PGGMIQADSATNSLII--TASDPV-----------YRNLRSVIDQLD-ARRAQVYIEALIVELNSTTQGNLGIQWQVA-- 436
Cdd:COG4964 124 PGEGIRVRAVGDRVVLsgTVSSAAdadravdlaeaYAGGGKVINLLTvGGPQQVMLKVRVAEVSRSVLKQLGINWSGLgs 203

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 437 SGQFLGGTnlaptagnglgnsiinLTAGGLTNAAGGITGGGLASNLgqlsqglnigwlhnmFGVQGLGALLQYFAGVSDA 516
Cdd:COG4964 204 SGGFSFGL----------------LTGGLLSGLLGGATAGAFSGFG---------------FGNASISATLDALEQNGLA 252

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 517 NVLSTPNLITLDNEEAKIVVGQNVPIATGSysnlTSGTTSNAFntydrRDVGLTLHVKPQITDGGILKLQLYTEDSAVVN 596
Cdd:COG4964 253 RVLAEPNLTALSGETASFLAGGEFPIPVAQ----GDGTITVEY-----KEFGVSLNFTPTVLSNGRISLKVAPEVSELDP 323

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475 597 G---TTNSQTGPTFTKRSIQSTI-LADnGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRP 672
Cdd:COG4964 324 SnavTLNGITIPGLTTRRAETTVeLRS-GQSFAIAGLLSSNTRQNVSKVPGLGDIPILGALFRSRSFQRNETELVIIVTP 402


                ...
gi 11559475 673 VII 675
Cdd:COG4964 403 YLV 405
hofQ PRK13568
DNA uptake porin HofQ;
375-677 1.55e-24

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 106.36  E-value: 1.55e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  375 GMIQADSATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVELNSTTQGNLGIQWQVASGQflggtnlAPTAGNGL 454
Cdd:PRK13568 113 GSVTADKRTNTLLIRDTPAALAQLKNWLIELDLPLQQVQLAAHIVTISSESLQELGVRWGMGEGK-------QGNTALRI 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  455 GNSIINLTaggLTNAAGGiTGGGLASNLGQLsqgLNIGwlhnmfgvqgLGALLQYfagvSDANVLSTPNLITLDNEEAKI 534
Cdd:PRK13568 186 NDFNVNLP---LPNPAAS-AGFHLARLGGRL---LDLE----------LSALEQE----NQVDIIASPRLFTSHQQTASI 244

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  535 VVGQNVP--IATGSysnltSGTTSNAFntydrRDVGLTLHVKPQITDGG--ILKLQLytedSAVVNGTTNSQ-TGPTFT- 608
Cdd:PRK13568 245 KQGTEIPytVSSGK-----SGSTSIEF-----KEAVLGMEVTPKILRNGriTLKLKI----SQNMPGRTIKRgEGEMLAi 310

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  609 -KRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVIISD 677
Cdd:PRK13568 311 dKQEIQTQVTVKDGETIVLGGIFQQQKRQSVNKVPLLGDIPLLGALFRQDTQQQSRRELVIFITPKLISA 380
type_III_yscC TIGR02516
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to ...
 367-677 1.10e-22

type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274174 [Multi-domain]  Cd Length: 462  Bit Score: 102.07  E-value: 1.10e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   367 SGDDNQPggMIQADSATNSLIItaSDPVYR--NLRSVIDQLDARRAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGT 444
Cdd:TIGR02516 193 GRASASP--KISADPRTNAVLI--RDRPERmaIYEQLIQQLDVPPRLIEISAWIIDIDASDLSQLGVDWQATLGAGDRQT 268

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   445 NLAPTAGNGLGNSIINLTAGGLTNaaggitggglasnlgqlsqglnigwlhnmfgvqgLGALLQYFAGVSDANVLSTPNL 524
Cdd:TIGR02516 269 GFNVSAGAGLGATGSSIVTSDGDY----------------------------------FMARVNALEQTGKAKIVSRPSV 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   525 ITLDNEEAKI---------VVGQnvpiATGSYSNLTSGTTsnafntydrrdvgltLHVKPQITDGGI----LKLQLYTED 591
Cdd:TIGR02516 315 LTLENVQAVLdnnrtfyvkVSGE----RVADLESVTAGTS---------------LRVTPRVIGDEGaqrqIKLNVDIED 375

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   592 -SAVVNGTTNSQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTNLMVFL 670
Cdd:TIGR02516 376 gQQKTDGTSTVDALPEIKRTEINTQARVGHGQSLLIGGYYRDESADSVDGIPLLGDIPLLGNLFRSTSKEKSRVVRLFLI 455


                  ....*..
gi 11559475   671 RPVIISD 677
Cdd:TIGR02516 456 TPKIVRD 462
hofQ PRK10560
outer membrane porin HofQ; Provisional
 373-676 1.86e-21

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 97.20  E-value: 1.86e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  373 PGGMIQADSATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLAPTAGN 452
Cdd:PRK10560 116 AKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELAAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGS 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  453 GLgnSIINLTAggltnaaggitggglasnlgqlSQGLNIGWLHNMFGVQGLGALLQYfagvSDANVLSTPNLITLDNEEA 532
Cdd:PRK10560 196 DL--SVATATT----------------------RVGFNIGRINGRLLDLELSALEQK----QQLDIIASPRLLASHLQPA 247

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  533 KIVVGQNVPIATGSYSnltSGTTSNAFntydrRDVGLTLHVKPQITDGGILKLQLYTedSAVVNGTTNSQT-GPTFT--K 609
Cdd:PRK10560 248 SIKQGSEIPYQVSSGE---SGATSVEF-----KEAVLGMEVTPTVLQKGRIRLKLHI--SQNVPGQVLQQAdGEVLAidK 317

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 11559475  610 RSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVIIS 676
Cdd:PRK10560 318 QEIETQVEVKSGETLALGGIFSRKNKSGQDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLVS 384
PRK15346 PRK15346
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
371-659 9.43e-17

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237950 [Multi-domain]  Cd Length: 499  Bit Score: 83.97  E-value: 9.43e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  371 NQPGGMIQADSATNSLII---TASDPVYRNLrsvIDQLDARRAQVYIEALIVELNSTTQGNLGIQWQVASGqfLGGTNLA 447
Cdd:PRK15346 232 SQALPVFSADPRQNAVIVrdrAANMAIYRSL---ITQLDQRPQMIEISVSIIDVDAGDINQLGIDWSASAS--LGGGKIS 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  448 PTAGNGLGNSiinltaggltnaaggitgGGLASNLGQLSQglnigwlhnmFGVQgLGALLQYfagvSDANVLSTPNLITL 527
Cdd:PRK15346 307 FNSGFADGNA------------------SGFSTVISNTGN----------FMVR-LNALEKN----SKAKILSQPSVVTL 353

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  528 DNEEAkiVVGQNVPIATG----SYSNLTSGTTsnafntydrrdvGLTLHVKPQ-ITDGGILK--LQLYTEDSAvvNGTTN 600
Cdd:PRK15346 354 NNIQA--VLDKNVTFYTKlqgeKVAKLESITT------------GSLLRVTPRlIDDNGTQKvmLNLNIQDGQ--QSATQ 417

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 11559475  601 SQTGP----TFTKRSIQSTILAdnGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESK 659
Cdd:PRK15346 418 SETDPlpevQNSEIATQATLKA--GQSLLLGGFIQDKQIESQNKIPLLGDIPLIGGLFRSTDK 478
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 192-263 3.12e-12

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 62.23  E-value: 3.12e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 11559475   192 VQVVPLRNANAIDLAAQLQKMLDPGAIGNSdatlKVSVTADPRTNALLLRASnASRLAAAKRLVQQLDAPSA 263
Cdd:pfam03958   1 TRVIPLKYASAEDLASALRSLLGGSGLLSK----RGSVVADPRTNSLIVSGP-PEYVELVRQLIKQLDVPRA 67
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 129-187 1.07e-09

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 54.91  E-value: 1.07e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 11559475   129 TQVFELHNESANNLLPVLRPLI------SPNNTVTAYPANNTIVVTDYADNVRRIAQIISGVDSA 187
Cdd:pfam03958   1 TRVIPLKYASAEDLASALRSLLggsgllSKRGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDVP 65
IV PHA00019
phage assembly protein
 11-185 6.91e-09

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 58.67  E-value: 6.91e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   11 IATTLLVAGIIVSQAAYAQ-VTLNfvNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAE--RPVPEDQALKtlqSALRM 87
Cdd:PHA00019   6 FAKMLLFLLMFLSFSSFALpVELN--NSPIREFVSWYSQQTGKSVVLGPDVKGNVTVYSAdvNPANLPQFFD---SVLRA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475   88 QGFALVQDH--GVLKVVPEADAKLQGVPT-----YIGNAPQARGDQV----ITQVFELHNESANNLLPVLRPLI----SP 152
Cdd:PHA00019  81 NGFDLVAGGpaVVIKQNPNQEDYADDLRDsrddvFYDNSVPSGAPEVpndlIVRTFNINNVRASDLLPLVKIFVksngAP 160

                        170       180       190
                 ....*....|....*....|....*....|...
gi 11559475  153 NNTVTAYPANNTIVVTDYADNVRRIAQIISGVD 185
Cdd:PHA00019 161 GGSVTDLPGTNSLVVSGSASQLPALADFISAID 193
PRK15339 PRK15339
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
371-680 1.82e-08

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237948 [Multi-domain]  Cd Length: 559  Bit Score: 57.86  E-value: 1.82e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  371 NQPGGMIQ--ADSATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVELNSTTQGNLGIQWQvasgqflggtnlap 448
Cdd:PRK15339 260 NAAAGDIKiiAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRHVELSLWIIDLDKSDLEQLGVNWS-------------- 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  449 tagnglgnsiinltaggltnaaGGITGGGlasnlgQLSQGLNIGWLHNMFGVQGLGALLQyFAGVSDANVLSTPNLITLD 528
Cdd:PRK15339 326 ----------------------GSITIGD------KLGVSLNQSSISTLDGSRFIAAVMA-LEQKKKANVVSRPVVLTQE 376

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11559475  529 NEEAkiVVGQNVPIatgsYSNLTSGTTSNAFN-TYdrrdvGLTLHVKPQITDGGILKLQLYTEDSAVVNGTTNSQTG--- 604
Cdd:PRK15339 377 NIPA--IFDNNRTF----YTKLVGERNVALEHvTY-----GTMISVLPRFSADGQIEMSLDIEDGNEKTPQSDTTTSvda 445

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 11559475  605 -PTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKvrAKTNLM-VFL-RPVIISDRST 680
Cdd:PRK15339 446 lPEVGRTLISTIARVPQGKSLLIGGYTRDANTDEVQSIPFLGSLPLIGSLFRYSSK--NKSNIVrVFLiEPREIVEPLT 522
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 366-411 1.50e-05

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 43.36  E-value: 1.50e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 11559475   366 KSGDDNQPGGMIQADSATNSLIITASDPVYRNLRSVIDQLDARRAQ 411
Cdd:pfam03958  23 GGSGLLSKRGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDVPRAQ 68
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 128-194 4.12e-05

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 46.45  E-value: 4.12e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 11559475 128 ITQVFELHNESANNLLPVLRPLIS--PNNTVTAYPANNTIVVTDYADNVRRIAQIISGVDSAAgAQVQV 194
Cdd:COG1450  16 LRDVLRALYADAEDLAKVLRSLLGgaAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPR-RQVLI 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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