|
Name |
Accession |
Description |
Interval |
E-value |
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
1-747 |
0e+00 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 970.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 1 MAPTWLSDIPLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPGRRGRSWGLEGSQALSQQAEVIVRQLQELRWLEE 80
Cdd:pfam07111 1 MAPTWASDIPLVQSPGHQDVLERRLDTQRPTVTMWEQDVSGDGQGPGRRGRSLELEGSQALSQQAELISRQLQELRRLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 81 EVWLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGRQRELEEVQRLHQEQLSSLTQAH 160
Cdd:pfam07111 81 EVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 161 EEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVGEQVPSEVHSQTW 240
Cdd:pfam07111 161 EEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGEQVPPEVHSQTW 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 241 ELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRKCQSLLNRWREKVFALMV 320
Cdd:pfam07111 241 ELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 321 QLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRWWQQQTASAE 400
Cdd:pfam07111 321 QLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 401 EQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPV----TDVS 476
Cdd:pfam07111 401 EQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRQESCPPPPPAppvdADLS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 477 LELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQCQQESTEE 556
Cdd:pfam07111 481 LELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEE 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 557 AASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEAR 636
Cdd:pfam07111 561 AASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEAR 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 637 KEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLDkKKSVVSSPRpPECSASAPVAAAVPTRESIKG 716
Cdd:pfam07111 641 KEEGQRLARRVQELERDKNLMLATLQQEGLLSRYKQQRLLAVLPSGLD-KKSVVSSPR-PECSASAPIPAAVPTRESIKG 718
|
730 740 750
....*....|....*....|....*....|.
gi 5296000 717 SLSVLLDDLQDLSEAISKEEAVCQGDNLDRC 747
Cdd:pfam07111 719 SLTVLLDNLQGLSEAISREEAVCQEDNQDTC 749
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
59-653 |
1.11e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 91.15 E-value: 1.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 59 QALSQQAEVIVRQLQELRWLEeevwlLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGR 138
Cdd:COG1196 216 RELKEELKELEAELLLLKLRE-----LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 139 QRELEEVQRLHQEQlssltQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVT 218
Cdd:COG1196 291 YELLAELARLEQDI-----ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 219 LVENLRKYVGEQVpsevhsQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQpsdslep 298
Cdd:COG1196 366 ALLEAEAELAEAE------EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE------- 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 299 eftrkcqslLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVErmgakgL 378
Cdd:COG1196 433 ---------LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL------L 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 379 QLELSRAQEARRWWQQQTASAEEQLRLVVNAVsssqIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLAL 458
Cdd:COG1196 498 EAEADYEGFLEGVKAALLLAGLRGLAGAVAVL----IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 459 AQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQ----LSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQE 534
Cdd:COG1196 574 ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLReadaRYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 535 SLASLGLQLEVARQCQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQI 614
Cdd:COG1196 654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 5296000 615 QRRAAQEKERSQELRRLQEEARKEEGQRLA---RRLQELERD 653
Cdd:COG1196 734 REELLEELLEEEELLEEEALEELPEPPDLEeleRELERLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
68-686 |
3.97e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 80.19 E-value: 3.97e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 68 IVRQLQELRWLEE-----EVWLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGRQ--- 139
Cdd:PTZ00121 1168 EARKAEDAKKAEAarkaeEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKaee 1247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 140 -------RELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKS---LSSLETRRAGEAKELAEAQREAELLRKQLSKT 209
Cdd:PTZ00121 1248 ernneeiRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 210 QEDLEAQVTLVENLRKyVGEQVPSEVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRK 289
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKK-AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 290 VQPSDSLEPEfTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQlKGQVASLQEKVTSQSqEQAILQRSLQDKAAEVE 369
Cdd:PTZ00121 1407 ADELKKAAAA-KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK-KAEEAKKAEEAKKKA-EEAKKADEAKKKAEEAK 1483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 370 VERMGAKGLQLELSRAQEARRwwQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAqlpSLNNRLSYAVRKVHTIR 449
Cdd:PTZ00121 1484 KADEAKKKAEEAKKKADEAKK--AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK---AEEKKKADELKKAEELK 1558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 450 GLIARKLALAQLRQEScplpppvtDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQEL 529
Cdd:PTZ00121 1559 KAEEKKKAEEAKKAEE--------DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 530 QQTQESLASLGLQLEVARQCQQESTEEAASLRQEltqqqELYGQALQEKVAEVETRLREQlsdTERRLNEARREHAKAVV 609
Cdd:PTZ00121 1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA-----EEAKKAEEDKKKAEEAKKAEE---DEKKAAEALKKEAEEAK 1702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 610 SLRQIQRRAAQEKERSQELRRLQEE---------ARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLP 680
Cdd:PTZ00121 1703 KAEELKKKEAEEKKKAEELKKAEEEnkikaeeakKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
|
....*.
gi 5296000 681 SLLDKK 686
Cdd:PTZ00121 1783 EELDEE 1788
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
59-633 |
6.45e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 6.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 59 QALSQQAEVIVRQLQELRWLEEEVWLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEgR 138
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE-E 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 139 QRELEEVQRLHQEQLSSLtqahEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVT 218
Cdd:COG1196 325 LAELEEELEELEEELEEL----EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 219 LVENLRkyvgeqvpsevhsqtwELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQpsdslep 298
Cdd:COG1196 401 QLEELE----------------EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE------- 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 299 eftrkcqsllnrwREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGL 378
Cdd:COG1196 458 -------------EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 379 QLELSRAQEARRWWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPsLNNRLSYAVRKVHTIRGLIARKLAL 458
Cdd:COG1196 525 AVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP-LDKIRARAALAAALARGAIGAAVDL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 459 AQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLAS 538
Cdd:COG1196 604 VASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 539 LGLQLEVARQCQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRA 618
Cdd:COG1196 684 LAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
570
....*....|....*
gi 5296000 619 AQEKERSQELRRLQE 633
Cdd:COG1196 764 ELERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
79-652 |
3.99e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 3.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 79 EEEVWLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGR---QRELEEVQRLHQEQLSS 155
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRveiARKAEDARKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 156 LTQAHEEAlssltSKAEGLEKslsSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLE--AQVTLVENLRKYVGEQVPS 233
Cdd:PTZ00121 1174 DAKKAEAA-----RKAEEVRK---AEELRKAEDARKAEAARKAEEERKAEEARKAEDAKkaEAVKKAEEAKKDAEEAKKA 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 234 EvHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSL--EPEFTRKCQSLLNRW 311
Cdd:PTZ00121 1246 E-EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAkkKAEEAKKADEAKKKA 1324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 312 RE-KVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARR 390
Cdd:PTZ00121 1325 EEaKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 391 WWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQ------- 463
Cdd:PTZ00121 1405 KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKkaeeakk 1484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 464 --ESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAER----------------QQLSKVAQQL 525
Cdd:PTZ00121 1485 adEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEakkaeekkkadelkkaEELKKAEEKK 1564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 526 EQELQQTQESLASLGL-QLEVARQCQQESTEEAASLR--------QELTQQQELYGQALQEKVAEVETRLREQLSDTE-- 594
Cdd:PTZ00121 1565 KAEEAKKAEEDKNMALrKAEEAKKAEEARIEEVMKLYeeekkmkaEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEae 1644
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5296000 595 --RRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRL-----ARRLQELER 652
Cdd:PTZ00121 1645 ekKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeaeeAKKAEELKK 1709
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
62-675 |
8.68e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 8.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 62 SQQAEVIVRQLQELRWLEEEVWLLRETSLQQKmrLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEE----- 136
Cdd:TIGR02168 209 AEKAERYKELKAELRELELALLVLRLEELREE--LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEeieel 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 137 --------GRQRELEEVQRLHQEQLSSLTQAHEEALSSLtskaEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSK 208
Cdd:TIGR02168 287 qkelyalaNEISRLEQQKQILRERLANLERQLEELEAQL----EELESKLDELAEELAELEEKLEELKEELESLEAELEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 209 TQEDLEAQVTLVENLRKYVgEQVPSEVHSQTWEL-----ERQKLLETMQHLQEDRDSLHATAELL------------QVR 271
Cdd:TIGR02168 363 LEAELEELESRLEELEEQL-ETLRSKVAQLELQIaslnnEIERLEARLERLEDRRERLQQEIEELlkkleeaelkelQAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 272 VQSLTHILALQEEELTRKVQPSDSLEPEFTRKCQSL------LNRWREKVFALmVQLKAQELEHSDSVKQLK-------G 338
Cdd:TIGR02168 442 LEELEEELEELQEELERLEEALEELREELEEAEQALdaaereLAQLQARLDSL-ERLQENLEGFSEGVKALLknqsglsG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 339 QVASLQEKVTSQSQ-EQAI---LQRSLQ------DKAAEVEVERM-------------------GAKGLQLELSRAQEAR 389
Cdd:TIGR02168 521 ILGVLSELISVDEGyEAAIeaaLGGRLQavvvenLNAAKKAIAFLkqnelgrvtflpldsikgtEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 390 RWWQQQTASAEEQLRLVVNAVSSSQIWLETtmakVEGAAAQLPSLNNRLSYAVRKVHTIR--------------GLIARK 455
Cdd:TIGR02168 601 LGVAKDLVKFDPKLRKALSYLLGGVLVVDD----LDNALELAKKLRPGYRIVTLDGDLVRpggvitggsaktnsSILERR 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 456 LALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLsARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQES 535
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ-LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 536 LASLGLQLEVARQCQQESTEEAASLRQELTQQQELYGQALQEKVAevetrLREQLSDTERRLNEARREHAKAVVSLRQIQ 615
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA-----LREALDELRAELTLLNEEAANLRERLESLE 830
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 616 RRAAQEKERSQELRRlQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRL 675
Cdd:TIGR02168 831 RRIAATERRLEDLEE-QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
56-603 |
2.84e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 2.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 56 EGSQALSQQAEVIVRQLQELRWLEEEVWLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE 135
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 136 EGRQRELEEVQRLHQEQLSSLTQAHEEA--LSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDL 213
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAaqLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 214 EAQVTLVENLRKYVGEQVpsevhsQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPS 293
Cdd:COG1196 452 AELEEEEEALLELLAELL------EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 294 DSLEPEFTRKCQSLLNRwrekvfALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERM 373
Cdd:COG1196 526 VAVLIGVEAAYEAALEA------ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 374 GAKGLQLELSRAQEARRwwqqQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIA 453
Cdd:COG1196 600 AVDLVASDLREADARYY----VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 454 RKLALAQLRQEScplpppvtdVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQ 533
Cdd:COG1196 676 EAEAELEELAER---------LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 5296000 534 ESLASLGLQLEVArqcqqESTEEAASLRQELTQQQELYG----QALQEkVAEVETR---LREQLSDterrLNEARRE 603
Cdd:COG1196 747 LLEEEALEELPEP-----PDLEELERELERLEREIEALGpvnlLAIEE-YEELEERydfLSEQRED----LEEARET 813
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
335-682 |
1.75e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 1.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 335 QLKGQVASLQEKVtsqsqEQAILQRSLQDKAAEVEVERMGAK--GLQLELSRAQEARRWWQQQTASAEEQLRLVVNAVSS 412
Cdd:COG1196 197 ELERQLEPLERQA-----EKAERYRELKEELKELEAELLLLKlrELEAELEELEAELEELEAELEELEAELAELEAELEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 413 SQIWLETTMAKVEGAAAQLPSLNNRLSyavRKVHTIRGLIARKLALAQLRQEscplpppvtdVSLELQQLREERNRLDAE 492
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAELA---RLEQDIARLEERRRELEERLEE----------LEEELAELEEELEELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 493 LQlsarLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQCQQESTEEAASLRQELTQQQELyg 572
Cdd:COG1196 339 LE----ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL-- 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 573 QALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELER 652
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
330 340 350
....*....|....*....|....*....|
gi 5296000 653 DKNLMLATLQQEGLLSRYKQQRLLTVLPSL 682
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
59-655 |
2.02e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 2.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 59 QALSQQAEVIVRQLQELRWLEEEVWLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGR 138
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 139 QRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVT 218
Cdd:TIGR02168 417 ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 219 LVENLRKYvGEQVPSEVHSQT------------------WELERQKLL-ETMQHLQEDRDS--LHATAELLQVRVQSLTH 277
Cdd:TIGR02168 497 LQENLEGF-SEGVKALLKNQSglsgilgvlselisvdegYEAAIEAALgGRLQAVVVENLNaaKKAIAFLKQNELGRVTF 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 278 ILALQEEEltRKVQPSDSLEPEFTRKCQSLLNRWRE------KVFALMVQL------------KAQELEHSDSVKQLKGQ 339
Cdd:TIGR02168 576 LPLDSIKG--TEIQGNDREILKNIEGFLGVAKDLVKfdpklrKALSYLLGGvlvvddldnaleLAKKLRPGYRIVTLDGD 653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 340 VASLQEKVT--SQSQEQAILQRSLQDKAAEVEVERMGAK--GLQLELSRAQEARRWWQQQTASAEEQLRLVVNAVSSSQI 415
Cdd:TIGR02168 654 LVRPGGVITggSAKTNSSILERRREIEELEEKIEELEEKiaELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 416 WLETTMAKVEGAAAQLPSLN-NRLSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQ 494
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSkELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 495 LSARLIQQeVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQCQQESTEEAASLRQELTQQQELYGQA 574
Cdd:TIGR02168 814 LLNEEAAN-LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 575 ------LQEKVAEVETR---LREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLAR 645
Cdd:TIGR02168 893 rseleeLSEELRELESKrseLRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
650
....*....|
gi 5296000 646 RLQELERDKN 655
Cdd:TIGR02168 973 RLKRLENKIK 982
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
58-396 |
1.29e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 1.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 58 SQALSQQAEVIVRQLQELRWLEEEVWLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEeg 137
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE-- 1562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 138 rQRELEEVQRLHQEQLSSLTQAH-----EEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQED 212
Cdd:PTZ00121 1563 -KKKAEEAKKAEEDKNMALRKAEeakkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 213 LEAQVTLVENLRKYVGEQVPSEVHSQTWELERQKLLETMQHLQEDRdslHATAELLQvrvqslthilalQEEELTRKVQP 292
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE---KKAAEALK------------KEAEEAKKAEE 1706
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 293 SDSLEPEFTRKCQSLLNRWREKvfalmvQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEqaiLQRSLQDKAAEVEVER 372
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEEN------KIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH---LKKEEEKKAEEIRKEK 1777
|
330 340
....*....|....*....|....
gi 5296000 373 MGAkgLQLELSRAQEARRWWQQQT 396
Cdd:PTZ00121 1778 EAV--IEEELDEEDEKRRMEVDKK 1799
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
477-689 |
2.01e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 2.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 477 LELQQLREERNRLDAELQ-LSARLIQQEVGRAREQG-----EAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQCQ 550
Cdd:COG1196 274 LELEELELELEEAQAEEYeLLAELARLEQDIARLEErrrelEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 551 QESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRR 630
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 5296000 631 LQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLDKKKSV 689
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
120-404 |
8.18e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 8.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 120 LRAALAGAEVVRKNLEE--------GRQRELEEVQRLHQEQLSSLTQAHEE-ALSSLTSKAEGLEKSLSSLETRRAGEAK 190
Cdd:TIGR02169 172 KEKALEELEEVEENIERldliidekRQQLERLRREREKAERYQALLKEKREyEGYELLKEKEALERQKEAIERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 191 ELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVGEQVPSEVHSQTWELER------------QKLLETMQHLQEDR 258
Cdd:TIGR02169 252 ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASlersiaekerelEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 259 DSLHATAELL-------QVRVQSLTHILALQEEELTRKVQPSDSLEPEF--TRKCQSLLNRWREKVFALMVQLKAQELEH 329
Cdd:TIGR02169 332 DKLLAEIEELereieeeRKRRDKLTEEYAELKEELEDLRAELEEVDKEFaeTRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5296000 330 SDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRWWQQQTASAEEQLR 404
Cdd:TIGR02169 412 QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELS 486
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
59-271 |
2.23e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 2.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 59 QALSQQAEVIVRQLQELRW--LEEEVWLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVR----K 132
Cdd:COG4913 265 AAARERLAELEYLRAALRLwfAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRleqlE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 133 NLEEGRQRELEEVQRLHQEQLSSLTQAHEEALSSltskAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQED 212
Cdd:COG4913 345 REIERLERELEERERRRARLEALLAALGLPLPAS----AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE 420
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 5296000 213 LEAQVTLVENLRKyVGEQVPSEVHsqtwelERQKLLEtmQHLQEDRDSLHATAELLQVR 271
Cdd:COG4913 421 LRELEAEIASLER-RKSNIPARLL------ALRDALA--EALGLDEAELPFVGELIEVR 470
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
394-664 |
5.90e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 5.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 394 QQTASAEEQLRLVVNAVSSSQIWLETtmAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLA-LAQLRQESCPLPPPV 472
Cdd:TIGR02168 206 ERQAEKAERYKELKAELRELELALLV--LRLEELREELEELQEELKEAEEELEELTAELQELEEkLEELRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 473 TDVSLELQQLREERNRLDAELQ-LSARLIQ-----QEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVA 546
Cdd:TIGR02168 284 EELQKELYALANEISRLEQQKQiLRERLANlerqlEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 547 RQCQQESTEEAASLRQELTQQQELYGQALQEKVAEVET--RLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKER 624
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEieRLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE 443
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 5296000 625 SQELRRLQEEARKEEGQRLARRLQELERDKNLMLATLQQE 664
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
471-663 |
1.10e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 471 PVTDVSLELQQLREERNRLDAELQ-LSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLglqLEVARQC 549
Cdd:COG4913 256 PIRELAERYAAARERLAELEYLRAaLRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREEL---DELEAQI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 550 QQESTEEAASLRQELTQQQELYGQaLQEKVAEVETRLR---EQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEK-ERS 625
Cdd:COG4913 333 RGNGGDRLEQLEREIERLERELEE-RERRRARLEALLAalgLPLPASAEEFAALRAEAAALLEALEEELEALEEALaEAE 411
|
170 180 190
....*....|....*....|....*....|....*...
gi 5296000 626 QELRRLQEEARkeegqRLARRLQELERDKNLMLATLQQ 663
Cdd:COG4913 412 AALRDLRRELR-----ELEAEIASLERRKSNIPARLLA 444
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
331-638 |
2.61e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 331 DSVKQLKGQVASLQEKVtsqsqEQAILQRSLQDKAAEVEVERmgakgLQLELSRAQEARRWWQQQTASAEEQLRLVVNAV 410
Cdd:TIGR02168 193 DILNELERQLKSLERQA-----EKAERYKELKAELRELELAL-----LVLRLEELREELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 411 SSSQIWLETTMA-------KVEGAAAQLPSLNNRLS--------YAVRKVHTIRGLIARKLALAQLRQESCPLPPPVTDV 475
Cdd:TIGR02168 263 QELEEKLEELRLevseleeEIEELQKELYALANEISrleqqkqiLRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 476 SLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQEsLASLGLQLEVARQCQQESTE 555
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE-IERLEARLERLEDRRERLQQ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 556 EAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEA 635
Cdd:TIGR02168 422 EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
...
gi 5296000 636 RKE 638
Cdd:TIGR02168 502 EGF 504
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
67-676 |
3.42e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 3.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 67 VIVRQLQELRWLEEEvwllRETSLQ-QKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRknleEGRQRELEEV 145
Cdd:TIGR02169 192 IIDEKRQQLERLRRE----REKAERyQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEEL----EKLTEEISEL 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 146 QRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRK 225
Cdd:TIGR02169 264 EKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 226 YVGEqvpsevhsqtWELERQKLLETMQHLQEDRdslhataELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRkcq 305
Cdd:TIGR02169 344 EIEE----------ERKRRDKLTEEYAELKEEL-------EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE--- 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 306 slLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRA 385
Cdd:TIGR02169 404 --LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 386 QEARRWWQQQTASAEEQLRLVVNAVSSS---QIWLETTMAKVEGAAAQLPS------------LNNRLSYAVRK-----V 445
Cdd:TIGR02169 482 EKELSKLQRELAEAEAQARASEERVRGGravEEVLKASIQGVHGTVAQLGSvgeryataievaAGNRLNNVVVEddavaK 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 446 HTIRGLIARK------LALAQLRQESCPLPPP----VTDVSLELQQLREER--------------NRLDA--ELQLSARL 499
Cdd:TIGR02169 562 EAIELLKRRKagratfLPLNKMRDERRDLSILsedgVIGFAVDLVEFDPKYepafkyvfgdtlvvEDIEAarRLMGKYRM 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 500 IQQ-----EVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQCQQESTEEAASLRQELTQQQELYG-- 572
Cdd:TIGR02169 642 VTLegelfEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGei 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 573 -------QALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKE---------RSQELRRLQEEAR 636
Cdd:TIGR02169 722 ekeieqlEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEalndlearlSHSRIPEIQAELS 801
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 5296000 637 K--EEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLL 676
Cdd:TIGR02169 802 KleEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
140-677 |
4.17e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 4.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 140 RELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQE--DLEAQV 217
Cdd:TIGR00618 190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLlkQLRARI 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 218 TLVENLRKYVGEQVPSEVHSQTWElerqKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLE 297
Cdd:TIGR00618 270 EELRAQEAVLEETQERINRARKAA----PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 298 PEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRslqdKAAEVEVERMGAKG 377
Cdd:TIGR00618 346 LLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQR----EQATIDTRTSAFRD 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 378 LQLELSRAQearrwwqqqtasAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQ-LPSLNNRLSYAVRKVHTIRGLIARKL 456
Cdd:TIGR00618 422 LQGQLAHAK------------KQQELQQRYAELCAAAITCTAQCEKLEKIHLQeSAQSLKEREQQLQTKEQIHLQETRKK 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 457 AL-AQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQ--QEVGRAREQGEAERQQLSKVAQQLEQELQQTQ 533
Cdd:TIGR00618 490 AVvLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQtyAQLETSEEDVYHQLTSERKQRASLKEQMQEIQ 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 534 ESLASLGlQLEVARQCQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEAR--REHAKAVVSL 611
Cdd:TIGR00618 570 QSFSILT-QCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQcsQELALKLTAL 648
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 5296000 612 RQIQRRAAQEKERSQELRRLQEEARK-EEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLT 677
Cdd:TIGR00618 649 HALQLTLTQERVREHALSIRVLPKELlASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE 715
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
56-299 |
4.57e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 56 EGSQALSQQAEVIVRQLQELRWLEEEVWLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGaevVRKNLE 135
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHK---LEEALN 782
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 136 EGRQRELEEVQRLHQEQLSSLtqahEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQ---REAELLRKQLSKTQED 212
Cdd:TIGR02169 783 DLEARLSHSRIPEIQAELSKL----EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQeqrIDLKEQIKSIEKEIEN 858
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 213 LEAQV-TLVENLRKYVGEQVPSEVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQ 291
Cdd:TIGR02169 859 LNGKKeELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
|
....*...
gi 5296000 292 PSDSLEPE 299
Cdd:TIGR02169 939 PKGEDEEI 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
243-599 |
7.30e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 7.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 243 ERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRkcqslLNRWREKVFALMVQL 322
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE-----LEAEIEELEERLEEA 773
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 323 KAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRWWQQQTASAEEQ 402
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 403 LRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSyavrkvhtirgliARKLALAQLRQESCPLPPPVTDVSLELQQL 482
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALA-------------LLRSELEELSEELRELESKRSELRRELEEL 920
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 483 REERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQCQQESTEEAASL-- 560
Cdd:TIGR02168 921 REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELke 1000
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 5296000 561 -RQELTQQQELYGQA---LQEKVAEVETRLREQLSDTERRLNE 599
Cdd:TIGR02168 1001 rYDFLTAQKEDLTEAketLEEAIEEIDREARERFKDTFDQVNE 1043
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
478-635 |
1.39e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 478 ELQQLREERNRLDAEL-QLSARL------IQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEvarqcq 550
Cdd:COG4913 303 ELARLEAELERLEARLdALREELdeleaqIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLP------ 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 551 qESTEEAASLRQELtqqqelygQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRR 630
Cdd:COG4913 377 -ASAEEFAALRAEA--------AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRD 447
|
....*
gi 5296000 631 LQEEA 635
Cdd:COG4913 448 ALAEA 452
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
55-684 |
1.85e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 55 LEGSQALSQQAEVIVRQLQELRWLEEEVWLLRE-----------------------------TSLQQKMRLEAQAMELEA 105
Cdd:TIGR00618 252 QEEQLKKQQLLKQLRARIEELRAQEAVLEETQErinrarkaaplaahikavtqieqqaqrihTELQSKMRSRAKLLMKRA 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 106 LARAEKAGRAEAEGLRAALAGAEVvrknlEEGRQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRR 185
Cdd:TIGR00618 332 AHVKQQSSIEEQRRLLQTLHSQEI-----HIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQ 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 186 AGEAKELAEAQREAEL------LRKQLSKTQEDLEAQVTLVENLRKYVGEQVPSEVHSQTWELERQKLLETMQHLQEDRD 259
Cdd:TIGR00618 407 REQATIDTRTSAFRDLqgqlahAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQET 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 260 SLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEfTRKCQSLLNRWR------EKVFALMVQLKAQELEHSDSV 333
Cdd:TIGR00618 487 RKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPL-TRRMQRGEQTYAqletseEDVYHQLTSERKQRASLKEQM 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 334 KQLKGQVASLQEKVTSQSQEQAILQRSLQD----KAAEVEVERMGAKGLQLELSRAQEA-----RRWWQQQTASAEEQLR 404
Cdd:TIGR00618 566 QEIQQSFSILTQCDNRSKEDIPNLQNITVRlqdlTEKLSEAEDMLACEQHALLRKLQPEqdlqdVRLHLQQCSQELALKL 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 405 LVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLRE 484
Cdd:TIGR00618 646 TALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIEN 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 485 ERNRLDAELQLSARLIQQEVGRAREQGE---AERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQCQQESTEEAASLR 561
Cdd:TIGR00618 726 ASSSLGSDLAAREDALNQSLKELMHQARtvlKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLE 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 562 QELTQQQELYGQAL---QEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKE 638
Cdd:TIGR00618 806 AEIGQEIPSDEDILnlqCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIK 885
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 5296000 639 ---EGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLD 684
Cdd:TIGR00618 886 iqfDGDALIKFLHEITLYANVRLANQSEGRFHGRYADSHVNARKYQGLA 934
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
150-673 |
2.51e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 150 QEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVGE 229
Cdd:pfam15921 91 QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNT 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 230 QVpsevhsqtwELERQKLLETMQHLQEDRDslhataellqvrvqslthILALQEEELTRKVQPSDSLEPEFTRKCQSLLN 309
Cdd:pfam15921 171 QI---------EQLRKMMLSHEGVLQEIRS------------------ILVDFEEASGKKIYEHDSMSTMHFRSLGSAIS 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 310 RWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQailqrsLQDKAAEVEVERMGAKglqlelSRAQEAR 389
Cdd:pfam15921 224 KILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDR------IEQLISEHEVEITGLT------EKASSAR 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 390 rwwqQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPS--LNNRLSYAVRKVHTIRGLIARKLALAQLRQESCP 467
Cdd:pfam15921 292 ----SQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSelREAKRMYEDKIEELEKQLVLANSELTEARTERDQ 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 468 LPPPVTDVSLELQQLREERNRLDAELQL----SARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGlQL 543
Cdd:pfam15921 368 FSQESGNLDDQLQKLLADLHKREKELSLekeqNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQG-QM 446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 544 E---VARQCQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQ--LSDTERRLNEARREHAKAVVSLRQIQRRA 618
Cdd:pfam15921 447 ErqmAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSErtVSDLTASLQEKERAIEATNAEITKLRSRV 526
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 5296000 619 AQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQ 673
Cdd:pfam15921 527 DLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQH 581
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
458-675 |
2.82e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 2.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 458 LAQLRQEscplpppVTDVSLELQQLREERNRLDAELQlsARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLA 537
Cdd:COG3206 184 LPELRKE-------LEEAEAALEEFRQKNGLVDLSEE--AKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPD 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 538 SLGLQLEVARQcqQESTEEAASLRQELTQQQELYG------QALQEKVAEVETRLREQLsdtERRLNEARREHAKAVVSL 611
Cdd:COG3206 255 ALPELLQSPVI--QQLRAQLAELEAELAELSARYTpnhpdvIALRAQIAALRAQLQQEA---QRILASLEAELEALQARE 329
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5296000 612 RQIQRRAAQEKERSQELRRLQeearkeegqrlaRRLQELERDKNLMLATLQQegLLSRYKQQRL 675
Cdd:COG3206 330 ASLQAQLAQLEARLAELPELE------------AELRRLEREVEVARELYES--LLQRLEEARL 379
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
502-662 |
2.99e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 502 QEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQCQQESTEEAASLRQELTQQQELygqalqEKVAE 581
Cdd:PTZ00121 1125 EDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEEL------RKAED 1198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 582 VETRLREQLSDTERRLNEARREHakavvslrqiQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLATL 661
Cdd:PTZ00121 1199 ARKAEAARKAEEERKAEEARKAE----------DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARR 1268
|
.
gi 5296000 662 Q 662
Cdd:PTZ00121 1269 Q 1269
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
59-198 |
4.24e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 59 QALSQQAEVIvRQLQELRWLEEEVWLLRET--SLQQKM-RLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE 135
Cdd:COG4913 641 DALQERREAL-QRLAEYSWDEIDVASAEREiaELEAELeRLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLE 719
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 5296000 136 EgRQRELEEVQRLHQEQLSSLTQAHEEALSSL--------------TSKAEGLEKSLSSLETRRAGEAKELAEAQRE 198
Cdd:COG4913 720 K-ELEQAEEELDELQDRLEAAEDLARLELRALleerfaaalgdaveRELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
496-650 |
4.43e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 496 SARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQCQQESTEE--AASLRQELTQQQELYgQ 573
Cdd:COG4913 600 SRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidVASAEREIAELEAEL-E 678
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 5296000 574 ALQEKVAEVEtRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQEL 650
Cdd:COG4913 679 RLDASSDDLA-ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER 754
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
543-675 |
5.81e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 40.04 E-value: 5.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 543 LEVARQCQQE---STEEAASLRQeLTQQQELYGQALqekvAEVETRLREQLSdTERRLNEARREHAKAVVSLRQIQRRAA 619
Cdd:PRK10929 119 LEKSRQAQQEqdrAREISDSLSQ-LPQQQTEARRQL----NEIERRLQTLGT-PNTPLAQAQLTALQAESAALKALVDEL 192
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 620 QEKERS----QELRRLQEEARKEEGQRLARRLQELerdKNLMLATLQQEGLLSRYKQQRL 675
Cdd:PRK10929 193 ELAQLSannrQELARLRSELAKKRSQQLDAYLQAL---RNQLNSQRQREAERALESTELL 249
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
164-647 |
6.85e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.75 E-value: 6.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 164 LSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVgEQVPSEVHSQTWELE 243
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAEL-EELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 244 RQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHilalQEEELTRKVQPSDSLEPEFTRKCQSLLNRWREkvfalmvqlk 323
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEE---------- 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 324 aqelehsdSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEvermgakGLQLELSRAQEARRWWQQQTASAEEQL 403
Cdd:COG4717 193 --------ELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE-------QLENELEAAALEERLKEARLLLLIAAA 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 404 RLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQEscplpppvTDVSLELQQLR 483
Cdd:COG4717 258 LLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEE--------EELEELLAALG 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 484 EERNRLDAELQLSARLIQ--QEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQCQQEsTEEAASLR 561
Cdd:COG4717 330 LPPDLSPEELLELLDRIEelQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQEL-KEELEELE 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 562 QELTQQQELYGQALQ----EKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRR---AAQEKERSQELRRLQEE 634
Cdd:COG4717 409 EQLEELLGELEELLEaldeEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDgelAELLQELEELKAELREL 488
|
490
....*....|...
gi 5296000 635 ARKEEGQRLARRL 647
Cdd:COG4717 489 AEEWAALKLALEL 501
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
393-625 |
7.02e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 7.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 393 QQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLA-LAQLRQEscplppp 471
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAeLAELEKE------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 472 VTDVSLELQQLREERNRLDAELQLSARLIQQEVG-RAREQGEAER--QQLSKVAQQLEQELQQTQESLAslglQLEVARQ 548
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLlSPEDFLDAVRrlQYLKYLAPARREQAEELRADLA----ELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 5296000 549 CQQESTEEAASLRQELTQQQELYGQALQEKvAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERS 625
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAER-QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
157-697 |
8.55e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 39.74 E-value: 8.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 157 TQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQlsktqedleAQVTLVENLRKyvGEQVPSEVH 236
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKA---------EEARKAEDARK--AEEARKAED 1150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 237 SQTWELERQklLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEftRKCQSLLNRWREKVF 316
Cdd:PTZ00121 1151 AKRVEIARK--AEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEE--RKAEEARKAEDAKKA 1226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 317 -----ALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQL----------E 381
Cdd:PTZ00121 1227 eavkkAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAkkaeekkkadE 1306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 382 LSRAQEARRWWQQQTASAEEQLRLVVNAVSSSqiwlETTMAKVEGAAAQLPSLNNRLSYAVRKVHtirgliARKLALAQL 461
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKA----EEAKKAAEAAKAEAEAAADEAEAAEEKAE------AAEKKKEEA 1376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 462 RQESCPLPPPVTDV--SLELQQLREERNRLDAELQLSARLiQQEVGRAREQGEAERQ--QLSKVAQQLEQELQQTQESLA 537
Cdd:PTZ00121 1377 KKKADAAKKKAEEKkkADEAKKKAEEDKKKADELKKAAAA-KKKADEAKKKAEEKKKadEAKKKAEEAKKADEAKKKAEE 1455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 538 SLGLQLEVARQCQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQL---SDTERRLNEARR--EHAKAVVSLR 612
Cdd:PTZ00121 1456 AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAkkkADEAKKAEEAKKadEAKKAEEAKK 1535
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5296000 613 QIQRRAAQEKERSQELRRlQEEARKEEGQRLARRLQELERDKNLmlaTLQQEGLLSRYKQQRLLTVLPSLLDKKKSVVSS 692
Cdd:PTZ00121 1536 ADEAKKAEEKKKADELKK-AEELKKAEEKKKAEEAKKAEEDKNM---ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
|
....*
gi 5296000 693 PRPPE 697
Cdd:PTZ00121 1612 AKKAE 1616
|
|
| |
