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Conserved domains on  [gi|1547669789|gb|AZT88957|]
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NADH dehydrogenase F, partial (plastid) [Barbarea intermedia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhF super family cl33324
NADH dehydrogenase subunit 5
 1-306 3.43e-171

NADH dehydrogenase subunit 5


The actual alignment was detected with superfamily member CHL00025:

Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 492.48  E-value: 3.43e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789   1 VPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFAIIACSTAGLTAFYMFRIYLLTFEGHLNTYFINYSGKKS 80
Cdd:CHL00025  391 MPITKTTFLLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKN 470

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789  81 GSFYSISLWGKEEEKKLNRNFglvPLLTMNNTKRASFFYKKTYKISNNVRNQTFITVENFGlNTRTFYYPQESDNTILFP 160
Cdd:CHL00025  471 SSFYSISLWGKEESKKINKLL---LLLTMNNNERVSFFSKKTYKIDGNVRNMIRSFITIFG-NKKTFSYPHESDNTMLFP 546

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789 161 MLVLLLFTLFIGAIGIPFNQEGIDFDILSKLFTPSINLLHKNSQSFVDWYEFLRNATFSVSIAFFGIFIAYCLYKPFYSS 240
Cdd:CHL00025  547 LLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHQNSNNSVDWYEFLTNAIFSVSIAFFGIFIASFLYGPVYSS 626

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1547669789 241 LLNLTLLNSFQKWNSKRIRWEKLINFVYNWSYNRGYIDAFFKKFLIESIRRLSKLTNFFDKRIIDG 306
Cdd:CHL00025  627 LQNLDLINSFVKGGPKRIFLDKIINVIYNWSYNRGYIDAFYTISFIKGIRGLAELTHFFDRRVIDG 692
 
Name Accession Description Interval E-value
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-306 3.43e-171

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 492.48  E-value: 3.43e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789   1 VPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFAIIACSTAGLTAFYMFRIYLLTFEGHLNTYFINYSGKKS 80
Cdd:CHL00025  391 MPITKTTFLLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKN 470

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789  81 GSFYSISLWGKEEEKKLNRNFglvPLLTMNNTKRASFFYKKTYKISNNVRNQTFITVENFGlNTRTFYYPQESDNTILFP 160
Cdd:CHL00025  471 SSFYSISLWGKEESKKINKLL---LLLTMNNNERVSFFSKKTYKIDGNVRNMIRSFITIFG-NKKTFSYPHESDNTMLFP 546

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789 161 MLVLLLFTLFIGAIGIPFNQEGIDFDILSKLFTPSINLLHKNSQSFVDWYEFLRNATFSVSIAFFGIFIAYCLYKPFYSS 240
Cdd:CHL00025  547 LLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHQNSNNSVDWYEFLTNAIFSVSIAFFGIFIASFLYGPVYSS 626

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1547669789 241 LLNLTLLNSFQKWNSKRIRWEKLINFVYNWSYNRGYIDAFFKKFLIESIRRLSKLTNFFDKRIIDG 306
Cdd:CHL00025  627 LQNLDLINSFVKGGPKRIFLDKIINVIYNWSYNRGYIDAFYTISFIKGIRGLAELTHFFDRRVIDG 692
Proton_antipo_C pfam01010
NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a ...
 58-300 3.19e-125

NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a carboxyl terminal extension of pfam00361. It includes subunit 5 from chloroplasts, and bacterial subunit L. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. This family is largely a few TM regions of the F subunit of NADH-Ubiquinone oxidoreductase from plants. The TMs form part of the anti-porter subunit.


Pssm-ID: 366417 [Multi-domain]  Cd Length: 244  Bit Score: 357.69  E-value: 3.19e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789  58 RIYLLTFEGHLNTYFINYSGKKSGSFYSISLWGKEEEKKLNRNFGLVPLLTMNNTKRASFFYKKTYKISNNVRN--QTFI 135
Cdd:pfam01010   1 RIYLLTFEGHLNVHFQNYSGKKNSSFYSISLWGKEGSKLINKNFRTLLLLTMNNNEKVSFFSKKTYRIDGNVRNmtRPFI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789 136 TVENFGlNTRTFYYPQESDNTILFPMLVLLLFTLFIGAIGIPFNQEGIDFDILSKLFTPSINLLHKNSQSFVDWYEFLRN 215
Cdd:pfam01010  81 TITHFD-NKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHKNSNNSVDWYEFVTN 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789 216 ATFSVSIAFFGIFIAYCLYKPFYSSLLNLTLLNSFQKWNSKRIRWEKLINFVYNWSYNRGYIDAFFKKFLIESIRRLSKL 295
Cdd:pfam01010 160 AIFSVSIAYFGIFIASFLYKPVYSSFQNLDLINSFVKKGPKRIFLDKIINVIYNWSYNRGYIDVFYTTSFTRGIRGLAEL 239


                  ....*
gi 1547669789 296 TNFFD 300
Cdd:pfam01010 240 THFFD 244
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 2-306 4.29e-23

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 99.07  E-value: 4.29e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEILN---DSLLFSPIFAIIACSTAGLTAFYMFRIYLLTFeghlntyfinysgk 78
Cdd:COG1009   367 PITAITFLIGALSLAGIPPFAGFFSKEAILEaalEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVF-------------- 432

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789  79 ksgsfysislWGKEEEKKLNRnfglvplltmnntkrasffykktykisnnvrnqtfitvenfglntrtfyyPQESDNTIL 158
Cdd:COG1009   433 ----------FGKPRPKTPKH--------------------------------------------------PHESPWLMT 452

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789 159 FPMLVLLLFTLFIGAIGIPFNQEGIDfdiLSKLFTPSINLLHknsqsfvdwyEFLRNATfSVSIAFFGIFIAYCLYkpfy 238
Cdd:COG1009   453 LPLVVLAVLSLVLGLLLPGLLEGLLA---PAAVLGGELHLAH----------GLLLNAL-PLLLSLLGIALGYLLY---- 514

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1547669789 239 ssllnltllnsfqkWNSKRIRWEKLINFVYNWSYNRGYIDAFFKKFLIESIRRLSKLtNFFDKRIIDG 306
Cdd:COG1009   515 --------------LKRPLPALAERLKPLYRLLANKWYFDELYDALFVKPVRALARF-LWFDRYVIDG 567
 
Name Accession Description Interval E-value
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-306 3.43e-171

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 492.48  E-value: 3.43e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789   1 VPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFAIIACSTAGLTAFYMFRIYLLTFEGHLNTYFINYSGKKS 80
Cdd:CHL00025  391 MPITKTTFLLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKN 470

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789  81 GSFYSISLWGKEEEKKLNRNFglvPLLTMNNTKRASFFYKKTYKISNNVRNQTFITVENFGlNTRTFYYPQESDNTILFP 160
Cdd:CHL00025  471 SSFYSISLWGKEESKKINKLL---LLLTMNNNERVSFFSKKTYKIDGNVRNMIRSFITIFG-NKKTFSYPHESDNTMLFP 546

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789 161 MLVLLLFTLFIGAIGIPFNQEGIDFDILSKLFTPSINLLHKNSQSFVDWYEFLRNATFSVSIAFFGIFIAYCLYKPFYSS 240
Cdd:CHL00025  547 LLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHQNSNNSVDWYEFLTNAIFSVSIAFFGIFIASFLYGPVYSS 626

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1547669789 241 LLNLTLLNSFQKWNSKRIRWEKLINFVYNWSYNRGYIDAFFKKFLIESIRRLSKLTNFFDKRIIDG 306
Cdd:CHL00025  627 LQNLDLINSFVKGGPKRIFLDKIINVIYNWSYNRGYIDAFYTISFIKGIRGLAELTHFFDRRVIDG 692
Proton_antipo_C pfam01010
NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a ...
 58-300 3.19e-125

NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a carboxyl terminal extension of pfam00361. It includes subunit 5 from chloroplasts, and bacterial subunit L. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. This family is largely a few TM regions of the F subunit of NADH-Ubiquinone oxidoreductase from plants. The TMs form part of the anti-porter subunit.


Pssm-ID: 366417 [Multi-domain]  Cd Length: 244  Bit Score: 357.69  E-value: 3.19e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789  58 RIYLLTFEGHLNTYFINYSGKKSGSFYSISLWGKEEEKKLNRNFGLVPLLTMNNTKRASFFYKKTYKISNNVRN--QTFI 135
Cdd:pfam01010   1 RIYLLTFEGHLNVHFQNYSGKKNSSFYSISLWGKEGSKLINKNFRTLLLLTMNNNEKVSFFSKKTYRIDGNVRNmtRPFI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789 136 TVENFGlNTRTFYYPQESDNTILFPMLVLLLFTLFIGAIGIPFNQEGIDFDILSKLFTPSINLLHKNSQSFVDWYEFLRN 215
Cdd:pfam01010  81 TITHFD-NKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHKNSNNSVDWYEFVTN 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789 216 ATFSVSIAFFGIFIAYCLYKPFYSSLLNLTLLNSFQKWNSKRIRWEKLINFVYNWSYNRGYIDAFFKKFLIESIRRLSKL 295
Cdd:pfam01010 160 AIFSVSIAYFGIFIASFLYKPVYSSFQNLDLINSFVKKGPKRIFLDKIINVIYNWSYNRGYIDVFYTTSFTRGIRGLAEL 239


                  ....*
gi 1547669789 296 TNFFD 300
Cdd:pfam01010 240 THFFD 244
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
2-306 2.90e-32

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 125.91  E-value: 2.90e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFAIIACSTAGLTAFYMFRIYLLTFEGhlntyfiNYSGkksg 81
Cdd:PRK07376  392 PITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEANPALWFVGFLTAGMTAFYMFRMYFLTFEG-------EFRG---- 460

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789  82 sfysislwgkeeekklnrnfglvplltmNNTKRasffyKKTYKISNNVRNQTFITVENFGLNTRTFYYPQESDNTILFPM 161
Cdd:PRK07376  461 ----------------------------NDKEL-----QKELLAAADAPGHHEGHHEEHGEHHHHSGSPHESPWTMTLPL 507

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789 162 LVLLLFTLFIGAIGIPFNQEGIDFdilskLFTPSINLLHKNSqsfVDWYEFLRNATFSVSIAFFGIFIAYCLYkpfyssl 241
Cdd:PRK07376  508 VVLAVPSVLIGLLGTPWNNRFEAF-----LHAPGEALEAAAH---FEWGEFLILAGASVGIALIGITLASLMY------- 572

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1547669789 242 lnltllnSFQKWNSKRIrwEKLINFVYNWSYNRGYIDAFFKKFLIESIRRLSKLTNFFDKRIIDG 306
Cdd:PRK07376  573 -------LLKKIDPAAI--AERFPPLYQFSLNKWYLDDIYEKLFVKGSRRLARQVLEVDYKVVDG 628
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 2-306 4.29e-23

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 99.07  E-value: 4.29e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEILN---DSLLFSPIFAIIACSTAGLTAFYMFRIYLLTFeghlntyfinysgk 78
Cdd:COG1009   367 PITAITFLIGALSLAGIPPFAGFFSKEAILEaalEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVF-------------- 432

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789  79 ksgsfysislWGKEEEKKLNRnfglvplltmnntkrasffykktykisnnvrnqtfitvenfglntrtfyyPQESDNTIL 158
Cdd:COG1009   433 ----------FGKPRPKTPKH--------------------------------------------------PHESPWLMT 452

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789 159 FPMLVLLLFTLFIGAIGIPFNQEGIDfdiLSKLFTPSINLLHknsqsfvdwyEFLRNATfSVSIAFFGIFIAYCLYkpfy 238
Cdd:COG1009   453 LPLVVLAVLSLVLGLLLPGLLEGLLA---PAAVLGGELHLAH----------GLLLNAL-PLLLSLLGIALGYLLY---- 514

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1547669789 239 ssllnltllnsfqkWNSKRIRWEKLINFVYNWSYNRGYIDAFFKKFLIESIRRLSKLtNFFDKRIIDG 306
Cdd:COG1009   515 --------------LKRPLPALAERLKPLYRLLANKWYFDELYDALFVKPVRALARF-LWFDRYVIDG 567
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 2-306 1.12e-20

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 92.14  E-value: 1.12e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFA-IIACSTAGLTAFYMFRIYLLTFeghlntyfinysgkks 80
Cdd:PRK06590  374 PVTYATFLIGTLALIGIPPFAGFFSKDEILEAAFANGHINLfVAGLVGAFLTAFYSFRLIFLVF---------------- 437

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789  81 gsfysislwgkeeekklnrnfglvplltmnntkrasffykktykisnnvrnqtfitvenFGLNTRTFYYPQESDNTILFP 160
Cdd:PRK06590  438 -----------------------------------------------------------HGKEKEKIHHPHESPAVMTLP 458

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789 161 MLVLLLFTLFIGAIGIPFnqegidfdILSKLFTPSINLLHKNSQSFVDWYEFLrnaTFSVSIAffGIFIAYCLYKpfyss 240
Cdd:PRK06590  459 LIVLAVLSVFAGALIVPP--------FLGVLPLTTELAHGEAEHHLPVWVALL---PLVVALA--GIALAWLLYL----- 520

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1547669789 241 llnltllnsfqkwNSKRI--RWEKLINFVYNWSYNRGYIDAFFKKFLIESIRRLSK-LTNFFDKRIIDG 306
Cdd:PRK06590  521 -------------KKPTLptSIAAPGRFLYTLLRNKYYFDELYEKVFVKPGLALARlLWKDGDDGIIDG 576
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 2-66 1.33e-08

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 55.69  E-value: 1.33e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFAIIACSTAGLTAFYMFRIYLLTFEG 66
Cdd:PRK07390  376 PATTLAFLVGSAGLVALLPLGGFWALLRLADGLWAVSPWLVGVLLLVNALTAFNLTRVFRLVFLG 440
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 2-50 5.97e-08

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 53.09  E-value: 5.97e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFAIIACSTAG 50
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 2-60 2.69e-07

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 51.30  E-value: 2.69e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEILnDSLLFS--PIFAIIACSTAGLTAFYMFRIY 60
Cdd:COG0651   367 PLTAAAFLIGALALAGLPPLSGFVSKWLLL-QAALEAgaWLLAAVLLLSSLLTLAYFVRIF 426
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 2-84 8.00e-07

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 50.23  E-value: 8.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEILnDSLLFSPI----FAIIACSTaGLTAFYMFRIYLLTFEGHLNTYFinYSG 77
Cdd:MTH00151  333 PLTSGCLNISSLSLCGAPFLSGFYSKDLIL-ESSLMSPTsllmVLLMFVGV-GLTALYSARLSFCLVWGSMKSSS--LSS 408


                  ....*..
gi 1547669789  78 KKSGSFY 84
Cdd:MTH00151  409 KSDEDFY 415
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 2-61 1.68e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 49.38  E-value: 1.68e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLF---SPIFAIIACSTaGLTAFYMFRIYL 61
Cdd:MTH00207  336 PLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYphnSLMILMIFLAT-ALTAAYSTRFTL 397
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-83 9.55e-06

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 46.99  E-value: 9.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789   1 VPITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLL-FSPIFAI-IACSTAGLTAFYMFRIYLLTFEGHLNTYFINYSGK 78
Cdd:MTH00020  366 LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGqYYLIFAYwLGCFSALLTAFYSIRLIYLTFLSNTNLKKAVFFHL 445


                  ....*
gi 1547669789  79 KSGSF 83
Cdd:MTH00020  446 HEGDW 450
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 2-64 2.29e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 45.73  E-value: 2.29e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEIL-----NDSLLFSPIFAIIACStagLTAFYMFRIYLLTF 64
Cdd:MTH00208  393 PVTSSCIILGSLALMGTPFLAGFYSKDLILeaglaSISNLLSIILALIATL---LTAVYSFRIIFFCF 457
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-66 3.86e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 45.09  E-value: 3.86e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEILNDSLLFSPIFAIIACSTAGLTAFYMFRIYLLTFEG 66
Cdd:PRK08376  394 PKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPILGVIAMIGSVLTLASFVKVFHTAFFG 458
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-70 4.16e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 45.00  E-value: 4.16e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1547669789   1 VPITKTAFLVGTLSLCGIPPLACFWSKDEILndSLLFSPIFAIIA----CSTAGLTAFYMFRIYLLTFEGHLNT 70
Cdd:MTH00210  367 IPFTYVMILIGSLSLMGFPYLTGFYSKDLIL--ELTYDKYYIAFAywlgSFSALLTAFYSIRLIYLTFITNTNS 438
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 2-67 5.39e-05

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 44.38  E-value: 5.39e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKD---EILNDSLLFSPIFAIIACSTAgLTAFYMFRIYLLTFEGH 67
Cdd:MTH00004  366 PITSSCLTIGNLALMGTPFLSGFYSKDtiiETLNTSYLNAWALLLTLLATS-FTAAYSLRMILLVQTGF 433
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 2-84 7.54e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 43.98  E-value: 7.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEILnDSLLFSP----IFAIIACSTaGLTAFYMFRIYLLTFEGHLNTYFINYSG 77
Cdd:MTH00165  336 PLTSSCFNISNLSLCGFPFLSGFYSKDLIL-EMVSMSNlnffIFFLFFFST-GLTVSYSFRLIYYSMSGDFNLKSLNNLS 413


                  ....*..
gi 1547669789  78 KKSGSFY 84
Cdd:MTH00165  414 DESKFML 420
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-67 8.19e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 44.17  E-value: 8.19e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1547669789   1 VPITKTAFLVGTLSLCGIPPLACFWSKDEIL---NDSLL--FSPIFAIIAcstAGLTAFYMFRIYLLTFEGH 67
Cdd:MTH00211  360 LPFTSSCLFLGSLALMGFPFLSGFFSKDLILesmNGSYLnaWALLLTLLA---TSLTAAYSFRLIFLSLGGY 428
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-59 3.05e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 42.17  E-value: 3.05e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEIL---NDSLLFSPIFAIIACSTagLTAFYMFRI 59
Cdd:PRK08375  366 PLTAAAFAVASLSLIGVPPTSGFVSKWYLVvgaVEAGQWLVLAVLLASSL--LALLYFLRI 424
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 2-74 8.28e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 40.66  E-value: 8.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEI---LNDSLL--FSPIFAIIACStagLTAFYMFRIY---LLTFEGHLNTYFI 73
Cdd:MTH00066  364 PITTSCLTIGSLALTGTPFLAGFFSKDAIieaMNTSNLnsWALILTLIATS---FTAVYSFRIIyfsSMKFPRSLPLSPI 440


                  .
gi 1547669789  74 N 74
Cdd:MTH00066  441 N 441
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 2-66 1.60e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 39.87  E-value: 1.60e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEILNdSLLFS------------PIFAIIACSTAGLTAFYMFRIYLLTFEG 66
Cdd:PRK06521  382 PWTAWAFLIGCLAISALPPLNGFVSEWLLLQ-SLLSSpglpqwglklavPIAAAMLALTAALAAMCFVKFYGITFLG 457
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 2-67 3.82e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 38.68  E-value: 3.82e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKD---EILNDS------LLFSpifaIIACStagLTAFYMFRIYLLTFEGH 67
Cdd:MTH00108  367 PFTSTALIIGSLALTGMPFLTGFYSKDliiEAANTSytnawaLLIT----LIATS---LTAAYSTRIIFFALLGQ 434
PRK12650 PRK12650
DUF4040 family protein;
2-57 6.13e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 38.10  E-value: 6.13e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEILnDSLLFSPIFA---IIACSTAGLTAFYMF 57
Cdd:PRK12650  367 PFTFVSVTIAALSMAAVPPLFGFVSKEGML-TAFLEAPGGNagvVLLLVGAALGAVFTF 424
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 2-80 6.96e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 38.09  E-value: 6.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEILnDSLLFS--PIFAIIACSTA-GLTAFYMFRIYLLTFEGHLNTYFINYSGK 78
Cdd:MTH00209  332 PITSICLNIANLSLCGIPFLAGFYSKDLIL-ESMLESnmPIMTLILMFLStSLTAAYSMRLSYFSLWGPNSSKSLNSSFD 410


                  ..
gi 1547669789  79 KS 80
Cdd:MTH00209  411 QN 412
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 2-59 7.60e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 37.89  E-value: 7.60e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1547669789   2 PITKTAFLVGTLSLCGIPPLACFWSKDEI---LNDSLL--FSPIFAIIACStagLTAFYMFRI 59
Cdd:MTH00137  372 PFTSSCLTIGSLALTGTPFLAGFFSKDAIieaLNTSHLnaWALTLTLIATS---FTAVYSLRV 431
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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