|
Name |
Accession |
Description |
Interval |
E-value |
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
9-447 |
0e+00 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 695.65 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 9 DLGFAQDDSFKPLAAKLRPKSLAEYEGQEHILAKGMPLPLAIEQGKVHSIIFWGPPGTGKTTIAEIIANHANADIERVSA 88
Cdd:COG2256 3 DAAAEASAANAPLAERMRPRTLDEVVGQEHLLGPGKPLRRAIEAGRLSSMILWGPPGTGKTTLARLIANATDAEFVALSA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 89 VTSGIKDIRQAIENAKDRAiHQQRRTVLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPAFELNQAILSRARVYTL 168
Cdd:COG2256 83 VTSGVKDIREVIEEARERR-AYGRRTILFVDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNSALLSRCRVFVL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 169 KKLSKSNLSNVLARAISYQTKT-AQLDIVIDDEAKKQLIALANGDARRLLNLFENCLEITPvENNQQVLTKAQLIQVAGN 247
Cdd:COG2256 162 KPLSEEDLEQLLERALADDERGlGGYKLELDDEALEALARLADGDARRALNALELAVLSAP-PDGVIEITLELVEEALQR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 248 KIALYDKGGDAFYDLISAFHKSVRGSDPDAALYWYARILQGGGDALYVARRLLAIASEDIGNADPRAMQLAINAWDTFQR 327
Cdd:COG2256 241 RALRYDKDGDEHYDLISAFIKSIRGSDPDAALYWLARMLEAGEDPRFIARRLVIMASEDIGLADPQALQIAVAAAQAVER 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 328 VGPSEGERAIAQAAVYMALAPKSNAVYSAFNQAKALAAATSDLDVPLHLKNATSAITKELGHGSEYRYAHDEVGGFaAGE 407
Cdd:COG2256 321 LGMPEGRIALAQAVIYLATAPKSNAAYLAINAALADVREGGSLPVPLHLRNAPTKLMKELGYGKGYKYPHDYPGGY-VGQ 399
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1543019316 408 NYFPEEIAQTTLYQPTDRGLEKQLRDKLNYLNQLDQQSDQ 447
Cdd:COG2256 400 QYLPDELKGRRYYEPTERGFERKIKERLEKLRKLRRGARE 439
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
20-440 |
0e+00 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 674.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 20 PLAAKLRPKSLAEYEGQEHILAKGMPLPLAIEQGKVHSIIFWGPPGTGKTTIAEIIANHANADIERVSAVTSGIKDIRQA 99
Cdd:PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 100 IENAKDRAIHQqRRTVLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPAFELNQAILSRARVYTLKKLSKSNLSNV 179
Cdd:PRK13342 81 IEEARQRRSAG-RRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 180 LARAIsyqTKTAQLDIVIDDEAKKQLIALANGDARRLLNLFENCLEItpvennQQVLTKAQLIQVAGNKIALYDKGGDAF 259
Cdd:PRK13342 160 LKRAL---EDKERGLVELDDEALDALARLANGDARRALNLLELAALG------VDSITLELLEEALQKRAARYDKDGDEH 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 260 YDLISAFHKSVRGSDPDAALYWYARILQGGGDALYVARRLLAIASEDIGNADPRAMQLAINAWDTFQRVGPSEGERAIAQ 339
Cdd:PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQ 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 340 AAVYMALAPKSNAVYSAFNQAKALAAATSDLDVPLHLKNATSAITKELGHGSEYRYAHDEVGGFaAGENYFPEEIAQTTL 419
Cdd:PRK13342 311 AVIYLALAPKSNAAYTAINAALADVREGGSLPVPLHLRNAPTKLMKELGYGKGYKYPHDYPNGY-VGQQYLPDELKGKRY 389
|
410 420
....*....|....*....|.
gi 1543019316 420 YQPTDRGLEKQLRDKLNYLNQ 440
Cdd:PRK13342 390 YEPTERGFEKKIKERLEKLKD 410
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
11-436 |
1.17e-146 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 435.25 E-value: 1.17e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 11 GFAQDDSFKPLAAKLRPKSLAEYEGQEHILAKGMPLPLAIEQGKVHSIIFWGPPGTGKTTIAEIIANHANADIERVSAVT 90
Cdd:PRK13341 8 GEQMSQSEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 91 SGIKDIRQAIENAKDRAIHQQRRTVLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPAFELNQAILSRARVYTLKK 170
Cdd:PRK13341 88 AGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKS 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 171 LSKSNLSNVLARAISYQTK-TAQLDIVIDDEAKKQLIALANGDARRLLNLFENCLEITPVENNQQV-LTKAQLIQVAGNK 248
Cdd:PRK13341 168 LSDEDLHQLLKRALQDKERgYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIdITLAIAEESIQQR 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 249 IALYDKGGDAFYDLISAFHKSVRGSDPDAALYWYARILQGGGDALYVARRLLAIASEDIGNADPRAMQLAINAWDTFQRV 328
Cdd:PRK13341 248 AVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERV 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 329 GPSEGERAIAQAAVYMALAPKSNAVYSAFnqaKALAAATSDL--DVPLHLKNATSAiTKELGHGSEYRYAHDEVGGFAAg 406
Cdd:PRK13341 328 GLPEGLYPLAQAALYLATAPKSNSVLGFF---DALKKVREEQvqDVPNHLRDANRD-GKAFGDGVGYRYPHAFRDHWVA- 402
|
410 420 430
....*....|....*....|....*....|
gi 1543019316 407 ENYFPEEIAQTTLYQPTDRGLEKQLRDKLN 436
Cdd:PRK13341 403 QQYLPEALQGEVFWQPSRQGWEGERRERLA 432
|
|
| MgsA_C |
pfam12002 |
MgsA AAA+ ATPase C terminal; The MgsA protein possesses DNA-dependent ATPase and ssDNA ... |
272-430 |
4.32e-84 |
|
MgsA AAA+ ATPase C terminal; The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication. Additionally, MgsA may play a role in chromosomal segregation. This is consistent with a report that MgsA co-localizes with the replisome and affects chromosome segregation. This domain represents the C terminal region of MgsA.
Pssm-ID: 463426 [Multi-domain] Cd Length: 158 Bit Score: 254.96 E-value: 4.32e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 272 GSDPDAALYWYARILQGGGDALYVARRLLAIASEDIGNADPRAMQLAINAWDTFQRVGPSEGERAIAQAAVYMALAPKSN 351
Cdd:pfam12002 1 GSDPDAALYWLARMLEAGEDPLFIARRLVIIASEDIGLADPQALVVAVAAAQAVERIGMPEARIPLAQAVIYLALAPKSN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1543019316 352 AVYSAFNQAKALAAATSDLDVPLHLKNATSAITKELGHGSEYRYAHDEVGGFaAGENYFPEEIAQTTLYQPTDRGLEKQ 430
Cdd:pfam12002 81 SAYLAIDAALADVREGGSLPVPLHLRNAPTKLMKKLGYGKGYKYPHDYPNGY-VKQQYLPDELKGRRYYEPTDNGYEKK 158
|
|
| PRK14700 |
PRK14700 |
recombination factor protein RarA; Provisional |
133-439 |
3.46e-78 |
|
recombination factor protein RarA; Provisional
Pssm-ID: 173163 [Multi-domain] Cd Length: 300 Bit Score: 245.31 E-value: 3.46e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 133 LPHIEDGTIIFIGATTENPAFELNQAILSRARVYTLKKLSKSNLSNVLARAISYQTKTAQLDIVIDDEAKKQLIALANGD 212
Cdd:PRK14700 1 MPYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 213 ARRLLNLFENCLEITpVENNQQVLTKAQLIQVAGNKIALYDKGGDAFYDLISAFHKSVRGSDPDAALYWYARILQGGGDA 292
Cdd:PRK14700 81 CRKILNLLERMFLIS-TRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 293 LYVARRLLAIASEDIGNADPRAMQLAINAWDTFQRVGPSEGERAIAQAAVYMALAPKSNAVYSAFNQAKALAAATSDLDV 372
Cdd:PRK14700 160 LVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNIDV 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1543019316 373 PLHLKNATSaitkelghgSEYRYAHDEVGGFAAgENYFPEEIAQtTLYQPTDRGLEKQLRDKLNYLN 439
Cdd:PRK14700 240 PQHLKNYKD---------SNYLYPHNYPNSYVI-QQYLPDNIIQ-NFYQPTASGFEAKIKTKLDSIN 295
|
|
| AAA_assoc_2 |
pfam16193 |
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA ... |
192-271 |
7.92e-29 |
|
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA domains in proteins ranging from archaeal to fungi, plants and mammals.
Pssm-ID: 465057 Cd Length: 81 Bit Score: 108.32 E-value: 7.92e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 192 QLDIVIDDEAKKQLIALANGDARRLLNLFENCLEITPVENNQQVLTKAQLIQVAGNKIALYDKGGDAFYDLISAFHKSVR 271
Cdd:pfam16193 2 GLKIELDDEALEALAELADGDARRALNALELAVLSTPPDDGGIHITLEILEEALQRKALRYDKDGDEHYDLISAFHKSIR 81
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
27-321 |
2.56e-23 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 100.27 E-value: 2.56e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 27 PKSLAEYEGQEHILAkgmPLPLAIEQGKV-HSIIFWGPPGTGKTTIAEI------------------------IANHANA 81
Cdd:COG2812 6 PQTFDDVVGQEHVVR---TLKNALASGRLaHAYLFTGPRGVGKTTLARIlakalncengptgepcgecescraIAAGSHP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 82 DIERVSAVTS--GIKDIRQAIENAKDRAiHQQRRTVLFVDEVHRFNKSQQDAFL-------PHiedgtIIFIGATTEnPa 152
Cdd:COG2812 83 DVIEIDAEASniGVDDIRELIEKVSYAP-VEGRYKVYIIDEAHMLTTEAFNALLktleeppPH-----VVFILATTE-P- 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 153 felnQA----ILSRARVYTLKKLSKSNLSNVLARAisyqtkTAQLDIVIDDEAKKQLIALANGDARRLLNLFENCLEITP 228
Cdd:COG2812 155 ----QKllptILSRCQRFDFRRLPPEEIAEHLAKI------AEREGIEIEPEALALIARAADGSMRDALSLLDQAIAFGL 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 229 VENNQQVLtkaQLIQvagnkiALYDKGGDAFYDLISAFHKsvRGSDPDAAL----YWYARIL---QGGGDALYVARRLLA 301
Cdd:COG2812 225 LDRRELLL---DLLE------ALLAGDVAALLALAEELAK--RGRDLKRFLddllSLLRDLLllkLGPDAELLVNEDERE 293
|
330 340
....*....|....*....|
gi 1543019316 302 IASEDIGNADPRAMQLAINA 321
Cdd:COG2812 294 RLQELARRLSPERLLRAIQI 313
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
58-162 |
7.19e-21 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 88.03 E-value: 7.19e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKdraihQQRRTVLFVDEVHRFNKSQ-- 128
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGselvskyVGESEKRLRELFEAAK-----KLAPCVIFIDEIDALAGSRgs 75
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1543019316 129 ---------QDAFLPHIEDGT-----IIFIGATTEnpAFELNQAILSR 162
Cdd:pfam00004 76 ggdsesrrvVNQLLTELDGFTssnskVIVIAATNR--PDKLDPALLGR 121
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
18-221 |
5.30e-20 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 92.96 E-value: 5.30e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 18 FKPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIAN-----HANAD--------- 82
Cdd:PRK07133 5 YKALYRKYRPKTFDDIVGQDHIVQT---LKNIIKSNKIsHAYLFSGPRGTGKTSVAKIFANalncsHKTDLlepcqecie 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 --------IERVSAVTSGIKDIRQAIENAKDRAIHQQRRtVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATTENPA 152
Cdd:PRK07133 82 nvnnsldiIEMDAASNNGVDEIRELIENVKNLPTQSKYK-IYIIDEVHMLSKSAFNALLKTLEEppKHVIFILATTEVHK 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1543019316 153 FELnqAILSRARVYTLKKLSK----SNLSNVLAR-AISYQtktaqldividDEAKKQLIALANGDARRLLNLFE 221
Cdd:PRK07133 161 IPL--TILSRVQRFNFRRISEdeivSRLEFILEKeNISYE-----------KNALKLIAKLSSGSLRDALSIAE 221
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
25-145 |
5.85e-20 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 86.40 E-value: 5.85e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 25 LRPKSLAEYEGQEHILAKgmpLPLAIEQGKV------HsIIFWGPPGTGKTTIAEIIANHANADIErvsaVTSGikdirQ 98
Cdd:pfam05496 1 LRPRTLDEYIGQEKVKEN---LKIFIEAAKQrgealdH-VLLYGPPGLGKTTLANIIANEMGVNIR----ITSG-----P 67
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1543019316 99 AIENAKDRA---IHQQRRTVLFVDEVHRFNKSQQDAFLPHIEDGTI-IFIG 145
Cdd:pfam05496 68 AIERPGDLAailTNLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLdIVIG 118
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
25-145 |
4.18e-18 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 84.80 E-value: 4.18e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 25 LRPKSLAEYEGQEHILAKgmpLPLAIE----QGKV--HsIIFWGPPGTGKTTIAEIIANHANADIErvsaVTSGikdirQ 98
Cdd:PRK00080 19 LRPKSLDEFIGQEKVKEN---LKIFIEaakkRGEAldH-VLLYGPPGLGKTTLANIIANEMGVNIR----ITSG-----P 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1543019316 99 AIENAKDRA---IHQQRRTVLFVDEVHRFNKSQQDAFLPHIEDGTI-IFIG 145
Cdd:PRK00080 86 ALEKPGDLAailTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLdIMIG 136
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
17-218 |
8.21e-18 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 85.65 E-value: 8.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHANA-------------- 81
Cdd:PRK14953 2 MYIPFARKYRPKFFKEVIGQEIVVRI---LKNAVKLQRVsHAYIFAGPRGTGKTTIARILAKVLNClnpqegepcgkcen 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 82 --DIERVS---------AVTSGIKDIRQAIENAKDRAIhQQRRTVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATT 148
Cdd:PRK14953 79 cvEIDKGSfpdlieidaASNRGIDDIRALRDAVSYTPI-KGKYKVYIIDEAHMLTKEAFNALLKTLEEppPRTIFILCTT 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1543019316 149 EnpAFELNQAILSRARVYTLKKLSKSNLSNVLARaISYQTKtaqldIVIDDEAKKQLIALANG---DARRLLN 218
Cdd:PRK14953 158 E--YDKIPPTILSRCQRFIFSKPTKEQIKEYLKR-ICNEEK-----IEYEEKALDLLAQASEGgmrDAASLLD 222
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
1-145 |
8.90e-18 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 83.98 E-value: 8.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 1 MTNVNGSLDLGFAQDDSFKplaAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKV------HsIIFWGPPGTGKTTIAEI 74
Cdd:COG2255 1 MAEEDRLSSSASEEEDALE---RSLRPKRLDEYIGQEKVKEN---LKIFIEAAKKrgealdH-VLLYGPPGLGKTTLAHI 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1543019316 75 IANHANADIErvsaVTSGikdirQAIENAKDRA---IHQQRRTVLFVDEVHRFNKSQQDAFLPHIEDGTI-IFIG 145
Cdd:COG2255 74 IANEMGVNIR----ITSG-----PAIEKPGDLAailTNLEEGDVLFIDEIHRLSRVVEEILYPAMEDFRLdIVIG 139
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
24-221 |
8.62e-17 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 82.59 E-value: 8.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 24 KLRPKSLAEYEGQEHILAKgmpLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIA------NHANAD-------------- 82
Cdd:PRK05896 9 KYRPHNFKQIIGQELIKKI---LVNAILNNKLtHAYIFSGPRGIGKTSIAKIFAkainclNPKDGDccnscsvcesintn 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 -----IERVSAVTSGIKDIRQAIENAKDRAIHQQRRtVLFVDEVHRFNKSQQDAFLPHIEDGT--IIFIGATTENPAFEL 155
Cdd:PRK05896 86 qsvdiVELDAASNNGVDEIRNIIDNINYLPTTFKYK-VYIIDEAHMLSTSAWNALLKTLEEPPkhVVFIFATTEFQKIPL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1543019316 156 nqAILSRARVYTLKKLSKSNLSNVLaraisyQTKTAQLDIVIDDEAKKQLIALANGDARRLLNLFE 221
Cdd:PRK05896 165 --TIISRCQRYNFKKLNNSELQELL------KSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILD 222
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
17-221 |
2.14e-16 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 81.36 E-value: 2.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKV-HSIIFWGPPGTGKTTIAEI--------------------- 74
Cdd:PRK06647 2 SYRGTATKRRPRDFNSLEGQDFVVET---LKHSIESNKIaNAYIFSGPRGVGKTSSARAfarclncvngptpmpcgecss 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 75 ---IANHANAD-IERVSAVTSGIKDIRQAienaKDRAI---HQQRRTVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIG 145
Cdd:PRK06647 79 cksIDNDNSLDvIEIDGASNTSVQDVRQI----KEEIMfppASSRYRVYIIDEVHMLSNSAFNALLKTIEEppPYIVFIF 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1543019316 146 ATTEnpAFELNQAILSRARVYTLKKLSKSNLSNVLARAisyqtkTAQLDIVIDDEAKKQLIALANGDARRLLNLFE 221
Cdd:PRK06647 155 ATTE--VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKV------CLEDQIKYEDEALKWIAYKSTGSVRDAYTLFD 222
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
17-193 |
2.24e-16 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 81.68 E-value: 2.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHANAD------------- 82
Cdd:PRK08691 2 AYQVLARKWRPKTFADLVGQEHVVKA---LQNALDEGRLhHAYLLTGTRGVGKTTIARILAKSLNCEnaqhgepcgvcqs 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 ------------IERVSAVTSGIKDIRQAIENAKdRAIHQQRRTVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATT 148
Cdd:PRK08691 79 ctqidagryvdlLEIDAASNTGIDNIREVLENAQ-YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEppEHVKFILATT 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1543019316 149 EnpAFELNQAILSRARVYTLKKLSKSNLSNVLA-----RAISYQTKTAQL 193
Cdd:PRK08691 158 D--PHKVPVTVLSRCLQFVLRNMTAQQVADHLAhvldsEKIAYEPPALQL 205
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
17-221 |
7.83e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 79.85 E-value: 7.83e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHANAD------------- 82
Cdd:PRK14950 2 TVQVLYRKWRSQTFAELVGQEHVVQT---LRNAIAEGRVaHAYLFTGPRGVGKTSTARILAKAVNCTtndpkgrpcgtce 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 -------------IERVSAVTSGIKDIRQAIENAKDRAiHQQRRTVLFVDEVHRFNKSQQDAFLPHIEDGT--IIFIGAT 147
Cdd:PRK14950 79 mcraiaegsavdvIEMDAASHTSVDDAREIIERVQFRP-ALARYKVYIIDEVHMLSTAAFNALLKTLEEPPphAIFILAT 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1543019316 148 TEnpAFELNQAILSRARVYTLKKLSKSNLSNVLARaISyqtktAQLDIVIDDEAKKQLIALANGDARRLLNLFE 221
Cdd:PRK14950 158 TE--VHKVPATILSRCQRFDFHRHSVADMAAHLRK-IA-----AAEGINLEPGALEAIARAATGSMRDAENLLQ 223
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
20-221 |
9.16e-15 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 76.05 E-value: 9.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 20 PLAAKLRPKSLAEYEGQEhILAKgmPLPLAIEQGK-VHSIIFWGPPGTGKTTIAEIIA---------------------- 76
Cdd:PRK06645 10 PFARKYRPSNFAELQGQE-VLVK--VLSYTILNDRlAGGYLLTGIRGVGKTTSARIIAkavncsalitenttiktceqct 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 77 ------NHANADIERVSAVT-SGIKDIRQAIENAKDRAIhQQRRTVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGAT 147
Cdd:PRK06645 87 ncisfnNHNHPDIIEIDAASkTSVDDIRRIIESAEYKPL-QGKHKIFIIDEVHMLSKGAFNALLKTLEEppPHIIFIFAT 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1543019316 148 TEnpAFELNQAILSRARVYTLKKLSKSNLSNVLaraisyQTKTAQLDIVIDDEAKKQLIALANGDARRLLNLFE 221
Cdd:PRK06645 166 TE--VQKIPATIISRCQRYDLRRLSFEEIFKLL------EYITKQENLKTDIEALRIIAYKSEGSARDAVSILD 231
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
35-162 |
1.09e-14 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 71.02 E-value: 1.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 35 GQEHILAKgmpLPLAIEQGKVHSIIFWGPPGTGKTTIAEIIANHANADIERVSAVTS--------GIKDIRQAIENAKDR 106
Cdd:cd00009 2 GQEEAIEA---LREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAsdlleglvVAELFGHFLVRLLFE 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1543019316 107 AIHQQRRTVLFVDEVHRFNKSQQDAFLPHIED--------GTIIFIGATTENPAFELNQAILSR 162
Cdd:cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETlndlridrENVRVIGATNRPLLGDLDRALYDR 142
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
17-219 |
5.18e-14 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 74.01 E-value: 5.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHANAD------------- 82
Cdd:PRK14969 2 SYQVLARKWRPKSFSELVGQEHVVRA---LTNALEQQRLhHAYLFTGTRGVGKTTLARILAKSLNCEtgvtatpcgvcsa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 ------------IERVSAVTSGIKDIRQAIENAKdRAIHQQRRTVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATT 148
Cdd:PRK14969 79 cleidsgrfvdlIEVDAASNTQVDAMRELLDNAQ-YAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEppEHVKFILATT 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1543019316 149 EnPAfELNQAILSRARVYTLKKLSK----SNLSNVLaraisyqtktAQLDIVIDDEAKKQLIALANGDARRLLNL 219
Cdd:PRK14969 158 D-PQ-KIPVTVLSRCLQFNLKQMPPplivSHLQHIL----------EQENIPFDATALQLLARAAAGSMRDALSL 220
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
21-221 |
6.13e-14 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 73.65 E-value: 6.13e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 21 LAAKLRPKSLAEYEGQEHIlakGMPLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHANAD----------------- 82
Cdd:PRK14962 4 LYRKYRPKTFSEVVGQDHV---KKLIINALKKNSIsHAYIFAGPRGTGKTTVARILAKSLNCEnrkgvepcnecracrsi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 --------IERVSAVTSGIKDIRQAIENAKDRAIhQQRRTVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATTeNPA 152
Cdd:PRK14962 81 degtfmdvIELDAASNRGIDEIRKIRDAVGYRPM-EGKYKVYIIDEVHMLTKEAFNALLKTLEEppSHVVFVLATT-NLE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1543019316 153 fELNQAILSRARVYTLKKLSKSNLSNVLARAISYQTktaqldIVIDDEAKKQLIALANGDARRLLNLFE 221
Cdd:PRK14962 159 -KVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG------IEIDREALSFIAKRASGGLRDALTMLE 220
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
17-226 |
6.20e-14 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 73.95 E-value: 6.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKVH-SIIFWGPPGTGKTTIAEIIANHANAD----------IER 85
Cdd:PRK14959 2 SHASLTARYRPQTFAEVAGQETVKAI---LSRAAQENRVApAYLFSGTRGVGKTTIARIFAKALNCEtaptgepcntCEQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 86 VSAVTSGIKDIRQAIENAKDRAIHQQRR--------------TVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATTE 149
Cdd:PRK14959 79 CRKVTQGMHVDVVEIDGASNRGIDDAKRlkeaigyapmegryKVFIIDEAHMLTREAFNALLKTLEEppARVTFVLATTE 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1543019316 150 NPAFELnqAILSRARVYTLKKLSKSNLSnvlaraiSYQTKTAQLDIVIDDEAKKQLIA-LANGDARRLLNLFENCLEI 226
Cdd:PRK14959 159 PHKFPV--TIVSRCQHFTFTRLSEAGLE-------AHLTKVLGREGVDYDPAAVRLIArRAAGSVRDSMSLLGQVLAL 227
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
17-279 |
1.03e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 73.19 E-value: 1.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHANAD------------- 82
Cdd:PRK14957 2 SYQALARKYRPQSFAEVAGQQHALNS---LVHALETQKVhHAYLFTGTRGVGKTTLGRLLAKCLNCKtgvtaepcnkcen 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 ------------IERVSAVTSGIKDIRQAIENAKDRAiHQQRRTVLFVDEVHRFNKSQQDAFLPHIEDGT--IIFIGATT 148
Cdd:PRK14957 79 cvainnnsfidlIEIDAASRTGVEETKEILDNIQYMP-SQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPeyVKFILATT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 149 EnpAFELNQAILSRARVYTLKKLSKSNLSNVLARAIsyqtktAQLDIVIDDEAKKQLIALANGDARRLLNLFENCLEITP 228
Cdd:PRK14957 158 D--YHKIPVTILSRCIQLHLKHISQADIKDQLKIIL------AKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCG 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1543019316 229 VEnnqqvLTKAQLIQVAGnkiaLYDKggDAFYDLISAfhksVRGSDPDAAL 279
Cdd:PRK14957 230 GE-----LKQAQIKQMLG----IIDS--EEVYSIINA----IIDNDPKAIL 265
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
26-217 |
1.10e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 72.95 E-value: 1.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 26 RPKSLAEYEGQEHILAkgmPLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHAN---------ADIERVSAVTSG--- 92
Cdd:PRK14963 9 RPITFDEVVGQEHVKE---VLLAALRQGRLgHAYLFSGPRGVGKTTTARLIAMAVNcsgedpkpcGECESCLAVRRGahp 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 93 ------------IKDIRQAIENAKDRAIHQQRRtVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATTEnPAfELNQA 158
Cdd:PRK14963 86 dvleidaasnnsVEDVRDLREKVLLAPLRGGRK-VYILDEAHMMSKSAFNALLKTLEEppEHVIFILATTE-PE-KMPPT 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1543019316 159 ILSRARVYTLKKLSKSNLSNVLARAISYQTKTAqldividDEAKKQLIA-LANG---DARRLL 217
Cdd:PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-------EPEALQLVArLADGamrDAESLL 218
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
28-257 |
1.32e-13 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 71.18 E-value: 1.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 28 KSLAEYEGQEHILAKgmpLPLAIE-----QGKVHSIIFWGPPGTGKTTIAEIIANHANADIErvsaVTSGikdirQAIEN 102
Cdd:TIGR00635 1 KLLAEFIGQEKVKEQ---LQLFIEaakmrQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSG-----PALEK 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 103 AKDRA---IHQQRRTVLFVDEVHRFNKSQQDAFLPHIED------------GTII--------FIGATTE-----NPaFE 154
Cdd:TIGR00635 69 PGDLAailTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDfrldivigkgpsARSVrldlppftLVGATTRagmltSP-LR 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 155 LNQAILSRARVYTLKKLSKsnlsnVLARAisyqtkTAQLDIVIDDEAKKQLIALANGDARRLLNLFENCLEITPVEnNQQ 234
Cdd:TIGR00635 148 DRFGIILRLEFYTVEELAE-----IVSRS------AGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVR-GQK 215
|
250 260
....*....|....*....|...
gi 1543019316 235 VLTKAqLIQVAGNKIALYDKGGD 257
Cdd:TIGR00635 216 IINRD-IALKALEMLMIDELGLD 237
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
18-271 |
1.66e-13 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 72.77 E-value: 1.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 18 FKPLAAKLRPKSLAEYEGQEHIlakGMPLPLAIEQGKVH-SIIFWGPPGTGKTTIAEIIANHANAD-------------- 82
Cdd:PRK14960 2 YQVLARKYRPRNFNELVGQNHV---SRALSSALERGRLHhAYLFTGTRGVGKTTIARILAKCLNCEtgvtstpcevcatc 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 -----------IERVSAVTSGIKDIRQAIENAKdRAIHQQRRTVLFVDEVHRFNKSQQDAFLPHIEDGT--IIFIGATTE 149
Cdd:PRK14960 79 kavnegrfidlIEIDAASRTKVEDTRELLDNVP-YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPehVKFLFATTD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 150 nPAfELNQAILSRARVYTLKKLSKSNLSNVLARAISYQTKTAqldiviDDEAKKQLIALANGDARRLLNLFENCleitpV 229
Cdd:PRK14960 158 -PQ-KLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA------DQDAIWQIAESAQGSLRDALSLTDQA-----I 224
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1543019316 230 ENNQQVLTKAQLIQVAGnkiaLYDKggDAFYDLISAFHKSVR 271
Cdd:PRK14960 225 AYGQGAVHHQDVKEMLG----LIDR--TIIYDLILAVHQNQR 260
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
21-266 |
2.00e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 71.90 E-value: 2.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 21 LAAKLRPKSLAEYEGQEhiLAKGmPLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHAN------------------- 80
Cdd:PRK14956 8 LSRKYRPQFFRDVIHQD--LAIG-ALQNALKSGKIgHAYIFFGPRGVGKTTIARILAKRLNcenpignepcnectsclei 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 81 -----ADIERVSAVT-SGIKDIRQAIENAKDRAIHQQRRtVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATTEnpA 152
Cdd:PRK14956 85 tkgisSDVLEIDAASnRGIENIRELRDNVKFAPMGGKYK-VYIIDEVHMLTDQSFNALLKTLEEppAHIVFILATTE--F 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 153 FELNQAILSRARVYTLKKLSKSNLSNvlaraisYQTKTAQLDIVIDDE------AKKqlialANGDARRLLNLFENCLei 226
Cdd:PRK14956 162 HKIPETILSRCQDFIFKKVPLSVLQD-------YSEKLCKIENVQYDQeglfwiAKK-----GDGSVRDMLSFMEQAI-- 227
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1543019316 227 tpvennqqVLTKAQLIQVAGNKIALYdKGGDAFYDLISAF 266
Cdd:PRK14956 228 --------VFTDSKLTGVKIRKMIGY-HGIEFLTSFIKSL 258
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
22-221 |
3.52e-13 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 71.35 E-value: 3.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 22 AAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHAN-----ADIERVSAVTS---- 91
Cdd:PRK14971 8 ARKYRPSTFESVVGQEALTTT---LKNAIATNKLaHAYLFCGPRGVGKTTCARIFAKTINcqnltADGEACNECEScvaf 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 92 -----------------GIKDIRQAIENAKdraIHQQ--RRTVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATTEN 150
Cdd:PRK14971 85 neqrsyniheldaasnnSVDDIRNLIEQVR---IPPQigKYKIYIIDEVHMLSQAAFNAFLKTLEEppSYAIFILATTEK 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1543019316 151 paFELNQAILSRARVYTLKKLSKSNLSNVLARAISYQTKTAQLDIViddeakkQLIAL-ANGDARRLLNLFE 221
Cdd:PRK14971 162 --HKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEAL-------NVIAQkADGGMRDALSIFD 224
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
21-224 |
5.79e-13 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 70.68 E-value: 5.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 21 LAAKLRPKSLAEYEGQEHILAkgmPLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHANAD----------------- 82
Cdd:PRK14952 3 LYRKYRPATFAEVVGQEHVTE---PLSSALDAGRInHAYLFSGPRGCGKTSSARILARSLNCAqgptatpcgvcescval 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 ----------IERVSAVTSGIKDIRQaienAKDRAIH---QQRRTVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGAT 147
Cdd:PRK14952 80 apngpgsidvVELDAASHGGVDDTRE----LRDRAFYapaQSRYRIFIVDEAHMVTTAGFNALLKIVEEppEHLIFIFAT 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1543019316 148 TEnPAFELnQAILSRARVYTLKKLSKSNLSNVLARAIsyqtktAQLDIVIDDEAKKQLIALANGDARRLLNLFENCL 224
Cdd:PRK14952 156 TE-PEKVL-PTIRSRTHHYPFRLLPPRTMRALIARIC------EQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
17-171 |
1.40e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 69.39 E-value: 1.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHIlakGMPLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHANAD------------- 82
Cdd:PRK14965 2 SYLVLARKYRPQTFSDLTGQEHV---SRTLQNAIDTGRVaHAFLFTGARGVGKTSTARILAKALNCEqgltaepcnvcpp 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 ------------IERVSAVTSGIKDIRQAIENAKDRAIHqQRRTVLFVDEVHRFNKSQQDAFL-------PHIEdgtiiF 143
Cdd:PRK14965 79 cveitegrsvdvFEIDGASNTGVDDIRELRENVKYLPSR-SRYKIFIIDEVHMLSTNAFNALLktleeppPHVK-----F 152
|
170 180
....*....|....*....|....*...
gi 1543019316 144 IGATTEnpAFELNQAILSRARVYTLKKL 171
Cdd:PRK14965 153 IFATTE--PHKVPITILSRCQRFDFRRI 178
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
16-221 |
5.27e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 66.82 E-value: 5.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 16 DSFKPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKVHS-IIFWGPPGTGKTTIAEIIA---NHANAD--------- 82
Cdd:PRK14970 2 ENFVVSARKYRPQTFDDVVGQSHITNT---LLNAIENNHLAQaLLFCGPRGVGKTTCARILArkiNQPGYDdpnedfsfn 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 -IERVSAVTSGIKDIRQAIENAKDRAIHQQRRtVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATTENpaFELNQAI 159
Cdd:PRK14970 79 iFELDAASNNSVDDIRNLIDQVRIPPQTGKYK-IYIIDEVHMLSSAAFNAFLKTLEEppAHAIFILATTEK--HKIIPTI 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1543019316 160 LSRARVYTLKKLSKSNLSNVLARAISYQtktaqlDIVIDDEAKKQLIALANGDARRLLNLFE 221
Cdd:PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKE------GIKFEDDALHIIAQKADGALRDALSIFD 211
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
51-165 |
8.51e-12 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 63.07 E-value: 8.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 51 EQGKVHSIIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKDRAihqqrRTVLFVDEVHR 123
Cdd:cd19481 22 GLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVVKLssllskyVGESEKNLRKIFERARRLA-----PCILFIDEIDA 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1543019316 124 FNKSQQD------------AFLPHIEDGT----IIFIGATteNPAFELNQAILSRARV 165
Cdd:cd19481 97 IGRKRDSsgesgelrrvlnQLLTELDGVNsrskVLVIAAT--NRPDLLDPALLRPGRF 152
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
49-221 |
1.18e-11 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 65.00 E-value: 1.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 49 AIEQGKV-HSIIFWGPPGTGKTTIAEIIAN-----------------------HANADIERVSAV----TSGIKDIRQAI 100
Cdd:COG0470 11 AAESGRLpHALLLHGPPGIGKTTLALALARdllcenpeggkacgqchsrlmaaGNHPDLLELNPEeksdQIGIDQIRELG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 101 ENAKDRAiHQQRRTVLFVDEVHRFNKSQQDAFLPHIED---GTIIFIgaTTENPAfELNQAILSRARVYTLKKLSKSNLS 177
Cdd:COG0470 91 EFLSLTP-LEGGRKVVIIDEADAMNEAAANALLKTLEEppkNTPFIL--IANDPS-RLLPTIRSRCQVIRFRPPSEEEAL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1543019316 178 NVLARAisyqtktaqldiVIDDEAKKQLIALANGDARRLLNLFE 221
Cdd:COG0470 167 AWLREE------------GVDEDALEAILRLAGGDPRAAINLLQ 198
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
58-162 |
1.30e-11 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 66.09 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERV--SAVTSGI-----KDIRQAIENAKDRAihqqrRTVLFVDEV--------- 121
Cdd:COG0464 194 LLLYGPPGTGKTLLARALAGELGLPLIEVdlSDLVSKYvgeteKNLREVFDKARGLA-----PCVLFIDEAdalagkrge 268
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1543019316 122 --HRFNKSQQDAFLPHIEDGT--IIFIGATteNPAFELNQAILSR 162
Cdd:COG0464 269 vgDGVGRRVVNTLLTEMEELRsdVVVIAAT--NRPDLLDPALLRR 311
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
17-238 |
1.52e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 65.60 E-value: 1.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHI---LAKGMPLplaieqGKVH-SIIFWGPPGTGKTTIAEIIANHANAD---------- 82
Cdd:PRK14961 2 NYQILARKWRPQYFRDIIGQKHIvtaISNGLSL------GRIHhAWLLSGTRGVGKTTIARLLAKSLNCQngitsnpcrk 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 ---------------IERVSAVTSGIKDIRQAIENAKDRAIhQQRRTVLFVDEVHRFNKSQQDAFLPHIEDGT--IIFIG 145
Cdd:PRK14961 76 ciickeiekglcldlIEIDAASRTKVEEMREILDNIYYSPS-KSRFKVYLIDEVHMLSRHSFNALLKTLEEPPqhIKFIL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 146 ATTEnpAFELNQAILSRARVYTLKKLSKSNLSNVLARAISYQtktaqlDIVIDDEAKKQLIALANGDARRLLNLFENCLE 225
Cdd:PRK14961 155 ATTD--VEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKE------SIDTDEYALKLIAYHAHGSMRDALNLLEHAIN 226
|
250
....*....|...
gi 1543019316 226 ITPVENNQQVLTK 238
Cdd:PRK14961 227 LGKGNINIKNVTD 239
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
24-224 |
3.24e-11 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 65.28 E-value: 3.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 24 KLRPKSLAEYEGQEHIlAKgmPLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIA---NHANA------------------ 81
Cdd:PRK05563 9 KWRPQTFEDVVGQEHI-TK--TLKNAIKQGKIsHAYLFSGPRGTGKTSAAKIFAkavNCLNPpdgepcneceickaitng 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 82 ---D-IERVSAVTSGIKDIRQAIENAKdRAIHQQRRTVLFVDEVHR-----FNksqqdAFLPHIEDGT--IIFIGATTEN 150
Cdd:PRK05563 86 slmDvIEIDAASNNGVDEIRDIRDKVK-YAPSEAKYKVYIIDEVHMlstgaFN-----ALLKTLEEPPahVIFILATTEP 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1543019316 151 ---PAfelnqAILSRARVYTLKKLSKSNLSNVLARaIsyqtkTAQLDIVIDDEAKKqLIA-LANGDARRLLNLFENCL 224
Cdd:PRK05563 160 hkiPA-----TILSRCQRFDFKRISVEDIVERLKY-I-----LDKEGIEYEDEALR-LIArAAEGGMRDALSILDQAI 225
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
17-228 |
7.87e-11 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 64.21 E-value: 7.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKVH-SIIFWGPPGTGKTTIAEIIA---NHANAD---------- 82
Cdd:PRK14948 2 AYEPLHHKYRPQRFDELVGQEAIATT---LKNALISNRIApAYLFTGPRGTGKTSSARILAkslNCLNSDkptpepcgkc 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 --------------IERVSAVTSGIKDIRQAIENAKdRAIHQQRRTVLFVDEVHR-----FNksqqdAFLPHIED--GTI 141
Cdd:PRK14948 79 elcraiaagnaldvIEIDAASNTGVDNIRELIERAQ-FAPVQARWKVYVIDECHMlstaaFN-----ALLKTLEEppPRV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 142 IFIGATTeNPAFELNqAILSRARVYTLKKLSKSNLSNVLaraisyqTKTAQLD-IVIDDEAKKqLIA-LANG---DARRL 216
Cdd:PRK14948 153 VFVLATT-DPQRVLP-TIISRCQRFDFRRIPLEAMVQHL-------SEIAEKEsIEIEPEALT-LVAqRSQGglrDAESL 222
|
250
....*....|....*
gi 1543019316 217 L---NLFENclEITP 228
Cdd:PRK14948 223 LdqlSLLPG--PITP 235
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
20-214 |
2.40e-10 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 62.25 E-value: 2.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 20 PLAAKLRPKSLAEYEGQEHILAKGMPLPLAIEQGKVH-SIIFWGPPGTGKTTIAEIIANHA-------NADIERVSAVts 91
Cdd:PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKkALLLYGPPGVGKTSLAHALANDYgwevielNASDQRTADV-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 92 gIKDIrqAIENAKDRAIHQQRRTVLFVDEVhrfnksqqDAFLPHIEDG---TIIFIGATTENP-------AFELNQA-IL 160
Cdd:PRK04195 81 -IERV--AGEAATSGSLFGARRKLILLDEV--------DGIHGNEDRGgarAILELIKKAKQPiiltandPYDPSLReLR 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1543019316 161 SRARVYTLKKLSKSNLSNVLaRAIsyqtkTAQLDIVIDDEAKKQLIALANGDAR 214
Cdd:PRK04195 150 NACLMIEFKRLSTRSIVPVL-KRI-----CRKEGIECDDEALKEIAERSGGDLR 197
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
17-239 |
3.44e-10 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 61.71 E-value: 3.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHAN-----ADIE------ 84
Cdd:PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAV---LKNALRFNRAaHAYLFSGIRGTGKTTLARIFAKALNcqnptEDQEpcnqca 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 85 ---RVSAVTS------------GIKDIRQAIEnakdraihqqrrTVLFV-----------DEVHRFNKSQQDAFLPHIED 138
Cdd:PRK06305 80 sckEISSGTSldvleidgashrGIEDIRQINE------------TVLFTpsksrykiyiiDEVHMLTKEAFNSLLKTLEE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 139 --GTIIFIGATTENpaFELNQAILSRARVYTLKKLSKSNLSNVLARAisyqtkTAQLDIVIDDEAKKQLIALANGDARRL 216
Cdd:PRK06305 148 ppQHVKFFLATTEI--HKIPGTILSRCQKMHLKRIPEETIIDKLALI------AKQEGIETSREALLPIARAAQGSLRDA 219
|
250 260
....*....|....*....|...
gi 1543019316 217 LNLFENCLEITPVENNQQVLTKA 239
Cdd:PRK06305 220 ESLYDYVVGLFPKSLDPDSVAKA 242
|
|
| HLD_clamp_RarA |
cd18139 |
helical lid domain of recombination factor protein RarA; Recombination factor RarA ... |
171-246 |
3.89e-10 |
|
helical lid domain of recombination factor protein RarA; Recombination factor RarA (Replication associated recombination gene/protein A, also known as MgsA (Maintenance of genome stability A) or Mgs1 in yeast and WRNIP1 in mammals) is a member of the clamp-loader clade of the AAA+ superfamily. It functions as a tetramer. RarA co-localize with the replication fork throughout the cell cycle and may play a role in the rescue of stalled replication forks.
Pssm-ID: 350841 [Multi-domain] Cd Length: 75 Bit Score: 55.72 E-value: 3.89e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1543019316 171 LSKSNLSNVLARAISYQTKTAQLDIVIDDEAKKQLIALANGDARRLLNLFENCLEITPvENNQQVLTKAQLIQVAG 246
Cdd:cd18139 1 LSEEDLEKLLKRALEDKERGGDRKVTIDDEALELLAEAADGDARSALNLLELAVLSAE-EDGGIVITLEDLEEVLQ 75
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
21-221 |
4.34e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 61.72 E-value: 4.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 21 LAAKLRPKSLAEYEGQEhILAKgmPLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIA----------------------- 76
Cdd:PRK14964 3 LALKYRPSSFKDLVGQD-VLVR--ILRNAFTLNKIpQSILLVGASGVGKTTCARIISlclncsngptsdpcgtchncisi 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 77 -NHANAD-IERVSAVTSGIKDIRQAIENAKDRAIhQQRRTVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATTENPA 152
Cdd:PRK14964 80 kNSNHPDvIEIDAASNTSVDDIKVILENSCYLPI-SSKFKVYIIDEVHMLSNSAFNALLKTLEEpaPHVKFILATTEVKK 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 153 FELnqAILSRARVYTLKKLSKSNLSNVLaRAISyqtktAQLDIVIDDEAKKqLIAL-ANGDARRLLNLFE 221
Cdd:PRK14964 159 IPV--TIISRCQRFDLQKIPTDKLVEHL-VDIA-----KKENIEHDEESLK-LIAEnSSGSMRNALFLLE 219
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
56-171 |
8.00e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.00 E-value: 8.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 56 HSIIFWGPPGTGKTTIAEIIANHANADIERVSAV------------------------TSGIKDIRQAIENAKdraihQQ 111
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIdgedileevldqllliivggkkasGSGELRLRLALALAR-----KL 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1543019316 112 RRTVLFVDEVHRFNKSQQDAFL----------PHIEDGTIIFIGATTENPAF-ELNQAILSRARVYTLKKL 171
Cdd:smart00382 78 KPDVLILDEITSLLDAEQEALLllleelrlllLLKSEKNLTVILTTNDEKDLgPALLRRRFDRRIVLLLIL 148
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
21-174 |
1.92e-09 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 59.66 E-value: 1.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 21 LAAKLRPKSLAEYEGQEHIlAKgmPLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIA----------------------- 76
Cdd:PRK08451 4 LALKYRPKHFDELIGQESV-SK--TLSLALDNNRLaHAYLFSGLRGSGKTSSARIFAralvceqgpsstpcdtciqcqsa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 77 -NHANADI-ERVSAVTSGIKDIRQAIENAKDRAiHQQRRTVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATTEnpA 152
Cdd:PRK08451 81 lENRHIDIiEMDAASNRGIDDIRELIEQTKYKP-SMARFKIFIIDEVHMLTKEAFNALLKTLEEppSYVKFILATTD--P 157
|
170 180
....*....|....*....|..
gi 1543019316 153 FELNQAILSRARVYTLKKLSKS 174
Cdd:PRK08451 158 LKLPATILSRTQHFRFKQIPQN 179
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
56-162 |
5.24e-09 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 56.82 E-value: 5.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 56 HSIIFWGPPGTGKTTIAEIIANHAN---ADIERVSAVTS----GIKDIRQAIENAKdraihqQRRTVLFVDEVHRFNKS- 127
Cdd:COG1223 36 RKILFYGPPGTGKTMLAEALAGELKlplLTVRLDSLIGSylgeTARNLRKLFDFAR------RAPCVIFFDEFDAIAKDr 109
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1543019316 128 --QQD---------AFLPHIED--GTIIFIGATteNPAFELNQAILSR 162
Cdd:COG1223 110 gdQNDvgevkrvvnALLQELDGlpSGSVVIAAT--NHPELLDSALWRR 155
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
24-307 |
1.40e-08 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 56.03 E-value: 1.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 24 KLRPKSLAEYEGQEHILAKgmpLPLAIEQGKVHSIIFWGPPGTGKTTIAEIIAN------------HANADIERvsavts 91
Cdd:PRK00440 10 KYRPRTLDEIVGQEEIVER---LKSYVKEKNMPHLLFAGPPGTGKTTAALALARelygedwrenflELNASDER------ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 92 GIKDIRQAIEN-AKDRAIHQQRRTVLFVDEVHRFNKSQQDAFLPHIEdgtiIFigatTENPAFELN--------QAILSR 162
Cdd:PRK00440 81 GIDVIRNKIKEfARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTME----MY----SQNTRFILScnysskiiDPIQSR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 163 ARVYTLKKLSKSNLSNVLaRAISyqtktAQLDIVIDDEAKKQLIALANGDARRLLNLFENC----LEITPvENNQQVLTK 238
Cdd:PRK00440 153 CAVFRFSPLKKEAVAERL-RYIA-----ENEGIEITDDALEAIYYVSEGDMRKAINALQAAaatgKEVTE-EAVYKITGT 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 239 AQ------LIQVA--GNKIA--------LYDKG--GDafyDLISAFHKSVRGSDPDAALywYARILQGGGDALYvarRLL 300
Cdd:PRK00440 226 ARpeeireMIELAlnGDFTEareklrdlMIDYGlsGE---DIIKQIHREVWSLDIPEEL--KVELIDAIGEADF---RIT 297
|
....*..
gi 1543019316 301 AIASEDI 307
Cdd:PRK00440 298 EGANERI 304
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
17-219 |
1.58e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 56.81 E-value: 1.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKVH-SIIFWGPPGTGKTTIAEIIANHAN---AD---------- 82
Cdd:PRK12323 2 SYQVLARKWRPRDFTTLVGQEHVVRA---LTHALEQQRLHhAYLFTGTRGVGKTTLSRILAKSLNctgADgeggitaqpc 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 -----------------IERVSAVTSGIKDIRQAIENAKdRAIHQQRRTVLFVDEVHRFNKSQQDAFLPHIED--GTIIF 143
Cdd:PRK12323 79 gqcracteidagrfvdyIEMDAASNRGVDEMAQLLDKAV-YAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEppEHVKF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 144 IGATTEnPAfELNQAILSRARVYTLKKLSK----SNLSNVLaraisyqtktAQLDIVIDDEAKKQLIALANGDARRLLNL 219
Cdd:PRK12323 158 ILATTD-PQ-KIPVTVLSRCLQFNLKQMPPghivSHLDAIL----------GEEGIAHEVNALRLLAQAAQGSMRDALSL 225
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
17-214 |
2.21e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 56.05 E-value: 2.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHANA-----DIERVSAVT 90
Cdd:PRK14955 2 SYQVIARKYRPKKFADITAQEHITRT---IQNSLRMGRVgHGYIFSGLRGVGKTTAARVFAKAVNCqrmidDADYLQEVT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 91 ----------------------------SGIKDIRQAIENAKdRAIHQQRRTVLFVDEVHRFNKSQQDAFLPHIEDGT-- 140
Cdd:PRK14955 79 epcgecescrdfdagtslnisefdaasnNSVDDIRLLRENVR-YGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPph 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1543019316 141 IIFIGATTEnpAFELNQAILSRARVYTLKKLSKSNLSNVLaraisyQTKTAQLDIVIDDEAkKQLIAL-ANGDAR 214
Cdd:PRK14955 158 AIFIFATTE--LHKIPATIASRCQRFNFKRIPLEEIQQQL------QGICEAEGISVDADA-LQLIGRkAQGSMR 223
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
17-214 |
3.83e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 55.72 E-value: 3.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHANA-----DIERVSAVT 90
Cdd:PRK14954 2 SYQVIARKYRPSKFADITAQEHITHT---IQNSLRMDRVgHGYIFSGLRGVGKTTAARVFAKAVNCqrmidDPVYLQEVT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 91 ----------------------------SGIKDIRQAIENAKdRAIHQQRRTVLFVDEVHRFNKSQQDAFLPHIED--GT 140
Cdd:PRK14954 79 epcgecescrdfdagtslnisefdaasnNSVDDIRQLRENVR-YGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEppPH 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1543019316 141 IIFIGATTEnpAFELNQAILSRARVYTLKKLSKSNLSNVLARAISYQTktaqldIVIDDEAkKQLIAL-ANGDAR 214
Cdd:PRK14954 158 AIFIFATTE--LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG------IQIDADA-LQLIARkAQGSMR 223
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
56-120 |
1.29e-07 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 53.09 E-value: 1.29e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1543019316 56 HSIIFWGPPGTGKTTIAEIIANHANADIERV--SAVTS-----GIKDIRQAIENAKDRAihqqrRTVLFVDE 120
Cdd:COG1222 113 KGVLLYGPPGTGKTLLAKAVAGELGAPFIRVrgSELVSkyigeGARNVREVFELAREKA-----PSIIFIDE 179
|
|
| RecA-like_PAN_like |
cd19502 |
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
48-121 |
8.55e-07 |
|
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 48.87 E-value: 8.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 48 LAIEQGKvhSIIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKDRAihqqrRTVLFVDE 120
Cdd:cd19502 32 LGIEPPK--GVLLYGPPGTGKTLLAKAVANHTDATFIRVVGselvqkyIGEGARLVRELFEMAREKA-----PSIIFIDE 104
|
.
gi 1543019316 121 V 121
Cdd:cd19502 105 I 105
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
17-182 |
1.25e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 50.87 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHILakgMPLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHAN---AD---------- 82
Cdd:PRK14951 2 SYLVLARKYRPRSFSEMVGQEHVV---QALTNALTQQRLhHAYLFTGTRGVGKTTVSRILAKSLNcqgPDgqggitatpc 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 -----------------IERVSAVTSGIKDIRQAIENAKDRAIhQQRRTVLFVDEVHRFNKSQQDAFLPHIEDGT--IIF 143
Cdd:PRK14951 79 gvcqacrdidsgrfvdyTELDAASNRGVDEVQQLLEQAVYKPV-QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPeyLKF 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1543019316 144 IGATTEN---PAfelnqAILSRARVYTLKKLSK----SNLSNVLAR 182
Cdd:PRK14951 158 VLATTDPqkvPV-----TVLSRCLQFNLRPMAPetvlEHLTQVLAA 198
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
21-224 |
3.35e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 49.34 E-value: 3.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 21 LAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKVH-SIIFWGPPGTGKTTIAEIIANHANA----------DIERVSAV 89
Cdd:PRK14958 6 LARKWRPRCFQEVIGQAPVVRA---LSNALDQQYLHhAYLFTGTRGVGKTTISRILAKCLNCekgvsanpcnDCENCREI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 90 TSG---------------IKDIRQAIENAKdRAIHQQRRTVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATTENpa 152
Cdd:PRK14958 83 DEGrfpdlfevdaasrtkVEDTRELLDNIP-YAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEppSHVKFILATTDH-- 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1543019316 153 FELNQAILSRARVYTLKKLSKsnlsnvLARAISYQTKTAQLDIVIDDEAKKQLIALANGDARRLLNLFENCL 224
Cdd:PRK14958 160 HKLPVTVLSRCLQFHLAQLPP------LQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSI 225
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
58-121 |
3.78e-06 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 46.90 E-value: 3.78e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVS--AVTSGI-----KDIRQAIENAKDRAihqqrRTVLFVDEV 121
Cdd:cd19503 37 VLLHGPPGTGKTLLARAVANEAGANFLSISgpSIVSKYlgeseKNLREIFEEARSHA-----PSIIFIDEI 102
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
21-76 |
6.50e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 48.71 E-value: 6.50e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1543019316 21 LAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIA 76
Cdd:PRK07994 6 LARKWRPQTFAEVVGQEHVLTA---LANALDLGRLhHAYLFSGTRGVGKTTIARLLA 59
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
59-241 |
7.20e-06 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 47.25 E-value: 7.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 59 IFWGPPGTGKTTIAEIIAN-HANADIERVSAVTS------------GIKDIRQAIENAKDRAIHQQRRTV--LFVDEVHR 123
Cdd:COG2842 54 VVYGESGVGKTTAAREYANrNPNVIYVTASPSWTskelleelaeelGIPAPPGTIADLRDRILERLAGTGrlLIIDEADH 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 124 FNKsQQDAFLPHIEDGT---IIFIGatteNPafELNQAILSRARVY-------TLKKLSKSNLSNVLaraisyqtktAQL 193
Cdd:COG2842 134 LKP-KALEELRDIHDETgvgVVLIG----ME--RLPAKLKRYEQLYsrigfwvEFKPLSLEDVRALA----------EAW 196
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1543019316 194 DIVIDDEAKKQLIALANGDARRLLNLFENCLEITpVENNQQVLTKAQL 241
Cdd:COG2842 197 GELTDPDLLELLHRITRGNLRRLDRTLRLAARAA-KRNGLTKITLDHV 243
|
|
| RecA-like_VCP_r2 |
cd19529 |
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ... |
58-121 |
1.28e-05 |
|
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ATPase domains; The Valosin-containing protein-like ATPase of Thermoplasma acidophilum (VAT), is an archaeal homolog of the ubiquitous Cdc48/p97. It is a protein unfoldase that functions in concert with the 20S proteasome by unfolding proteasome substrates and passing them on for degradation. VAT forms a homohexamer, each monomer contains two tandem ATPase domains, referred to as D1 and D2, and an N-terminal domain. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410937 [Multi-domain] Cd Length: 159 Bit Score: 45.18 E-value: 1.28e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKdraihQQRRTVLFVDEV 121
Cdd:cd19529 30 ILLYGPPGTGKTLLAKAVATESNANFISVKGpellskwVGESEKAIREIFRKAR-----QVAPCVIFFDEI 95
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
24-165 |
1.33e-05 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 46.91 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 24 KLRPKSLaeyegQEHILAKGMPLPLA--IEQGKVHSIIFWGP-PGTGKTTIAEIIANHANADIERVSAVTSGIKDIRQAI 100
Cdd:PHA02544 14 KYRPSTI-----DECILPAADKETFKsiVKKGRIPNMLLHSPsPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRL 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1543019316 101 ENAKDRAIHQQRRTVLFVDE--------VHRFNKSQQDAFLPHIedgTIIFigatTENPAFELNQAILSRARV 165
Cdd:PHA02544 89 TRFASTVSLTGGGKVIIIDEfdrlgladAQRHLRSFMEAYSKNC---SFII----TANNKNGIIEPLRSRCRV 154
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
58-121 |
1.40e-05 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 45.47 E-value: 1.40e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVSA--VTSGI-----KDIRQAIENAKdraihQQRRTVLFVDEV 121
Cdd:cd19518 37 VLLHGPPGCGKTMLANAIAGELKVPFLKISAteIVSGVsgeseEKIRELFDQAI-----SNAPCIVFIDEI 102
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
58-121 |
1.72e-05 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 44.92 E-value: 1.72e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKDRAihqqrRTVLFVDEV 121
Cdd:cd19501 40 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGsdfvemfVGVGASRVRDLFEQAKKNA-----PCIVFIDEI 105
|
|
| RecA-like_VPS4-like |
cd19509 |
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ... |
57-166 |
2.39e-05 |
|
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410917 [Multi-domain] Cd Length: 163 Bit Score: 44.65 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 57 SIIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKDRAihqqrRTVLFVDEV-------- 121
Cdd:cd19509 34 GILLYGPPGTGKTLLARAVASESGSTFFSISAsslvskwVGESEKIVRALFALARELQ-----PSIIFIDEIdsllserg 108
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1543019316 122 ---HRFNKSQQDAFL------PHIEDGTIIFIGATteNPAFELNQAILSR--ARVY 166
Cdd:cd19509 109 sgeHEASRRVKTEFLvqmdgvLNKPEDRVLVLGAT--NRPWELDEAFLRRfeKRIY 162
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
20-218 |
2.96e-05 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 45.88 E-value: 2.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 20 PLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKVHSIIFWGPPGTGKTTIAEIIA------NHANADIERVSAVTSGI 93
Cdd:PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSR---LQVIARDGNMPNLILSGPPGTGKTTSILALAhellgpNYKEAVLELNASDDRGI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 94 KDIRQAIE--NAKDRAIHQQRRTVLFVDEVHRFNKSQQDAFLPHIE--DGTIIFigATTENPAFELNQAILSRARVYTLK 169
Cdd:PLN03025 79 DVVRNKIKmfAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEiySNTTRF--ALACNTSSKIIEPIQSRCAIVRFS 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1543019316 170 KLSKsnlSNVLARAIsyqtKTAQLDIV-IDDEAKKQLIALANGDARRLLN 218
Cdd:PLN03025 157 RLSD---QEILGRLM----KVVEAEKVpYVPEGLEAIIFTADGDMRQALN 199
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
57-162 |
3.12e-05 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 43.44 E-value: 3.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 57 SIIFWGPPGTGKTTIAEIIANH-ANADIERV--SAVTSgIKDIRQAIENAKDRAIHQ--------QRRTVLFVDEVHRFN 125
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAAlSNRPVFYVqlTRDTT-EEDLFGRRNIDPGGASWVdgplvraaREGEIAVLDEINRAN 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1543019316 126 KSQQDAFLP-------HIEDGT---------IIFIGATTENP--AFELNQAILSR 162
Cdd:pfam07728 80 PDVLNSLLSllderrlLLPDGGelvkaapdgFRLIATMNPLDrgLNELSPALRSR 134
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
30-155 |
3.38e-05 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 44.83 E-value: 3.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 30 LAEYEGQEHilAKGMpLPLAIEQGkvHSIIFWGPPGTGKTTIAE----IIANHANADIERVSAVTS--GIKDIRQAIENA 103
Cdd:pfam01078 2 LADVKGQEQ--AKRA-LEIAAAGG--HNLLMIGPPGSGKTMLAKrlpgILPPLTEAEALEVTAIHSvaGLGGDGGLIRRR 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1543019316 104 KDRAIHQQ---------------------RRTVLFVDEVHRFNKSQQDAFLPHIEDGTIIFI--GATTENPA-FEL 155
Cdd:pfam01078 77 PFRAPHHSasaaalvgggsiprpgeislaHNGVLFLDELPEFKRRVLESLRQPLEDGEITISraRAKVTFPArFQL 152
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
17-219 |
3.53e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 46.38 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 17 SFKPLAAKLRPKSLAEYEGQEHILakgMPLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIANHANAD------------- 82
Cdd:PRK07003 2 TYQVLARKWRPKDFASLVGQEHVV---RALTHALDGGRLhHAYLFTGTRGVGKTTLSRIFAKALNCEtgvtsqpcgvcra 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 83 ------------IERVSAVTSGIKDIRQAIEnakdRAIH---QQRRTVLFVDEVHRFNKSQQDAFL-------PHIEdgt 140
Cdd:PRK07003 79 creidegrfvdyVEMDAASNRGVDEMAALLE----RAVYapvDARFKVYMIDEVHMLTNHAFNAMLktleeppPHVK--- 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1543019316 141 iiFIGATTENPAFELnqAILSRARVYTLKKLSKSNLSNVLARAISYQtktaqlDIVIDDEAKKQLIALANGDARRLLNL 219
Cdd:PRK07003 152 --FILATTDPQKIPV--TVLSRCLQFNLKQMPAGHIVSHLERILGEE------RIAFEPQALRLLARAAQGSMRDALSL 220
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
57-145 |
4.01e-05 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 43.10 E-value: 4.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 57 SIIFWGPPGTGKTTIAEIIANHANADIERVSAVT----SGIKDIRQAIENAKDRAI------------------HQQRRT 114
Cdd:pfam13401 7 ILVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDlpsgTSPKDLLRALLRALGLPLsgrlskeellaalqqlllALAVAV 86
|
90 100 110
....*....|....*....|....*....|....*.
gi 1543019316 115 VLFVDEVHRFnKSQQDAFLPHIEDG-----TIIFIG 145
Cdd:pfam13401 87 VLIIDEAQHL-SLEALEELRDLLNLsskllQLILVG 121
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
19-77 |
4.80e-05 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 45.99 E-value: 4.80e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1543019316 19 KPLAAKLRPKSLAEYEGQEHILAKgmpLPLAIEQGKVHSIIFWGPPGTGK--TTIAEIIAN 77
Cdd:PRK04132 7 KPWVEKYRPQRLDDIVGQEHIVKR---LKHYVKTGSMPHLLFAGPPGVGKclTGDTKVIAN 64
|
|
| DEXXQc_Upf1-like |
cd17934 |
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, ... |
61-145 |
4.99e-05 |
|
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), coronavirus Nsp13, and similar proteins. They belong to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438708 [Multi-domain] Cd Length: 121 Bit Score: 42.61 E-value: 4.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 61 WGPPGTGKT-TIAEIIAN-HANADIERVsAVTSgikdirQ---AIENAkdraihqqrrTVLFVDEVhrfnkSQQ---DAF 132
Cdd:cd17934 5 QGPPGTGKTtTIAAIVLQlLKGLRGKRV-LVTA------QsnvAVDNV----------DVVIIDEA-----SQItepELL 62
|
90
....*....|...
gi 1543019316 133 LPHIEDGTIIFIG 145
Cdd:cd17934 63 IALIRAKKVVLVG 75
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
58-121 |
7.35e-05 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 44.82 E-value: 7.35e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKDRAihqqrRTVLFVDEV 121
Cdd:PRK03992 168 VLLYGPPGTGKTLLAKAVAHETNATFIRVVGselvqkfIGEGARLVRELFELAREKA-----PSIIFIDEI 233
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
56-211 |
8.76e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 44.25 E-value: 8.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 56 HSIIFWGPPGTGKTTIAEIIAN--------HANADIERVSAVTS---GIKDIRQAIENAKDRAIHQQRRtVLFVDEVHRF 124
Cdd:PRK05564 27 HAHIIVGEDGIGKSLLAKEIALkilgksqqREYVDIIEFKPINKksiGVDDIRNIIEEVNKKPYEGDKK-VIIIYNSEKM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 125 NKSQQDAFLPHIEDGTI-IFIGATTENPAFELNqAILSRARVYTLKKLSKSNLSNVlaraISYQTKtaqldiVIDDEAKK 203
Cdd:PRK05564 106 TEQAQNAFLKTIEEPPKgVFIILLCENLEQILD-TIKSRCQIYKLNRLSKEEIEKF----ISYKYN------DIKEEEKK 174
|
....*...
gi 1543019316 204 QLIALANG 211
Cdd:PRK05564 175 SAIAFSDG 182
|
|
| RecA-like_Figl-1 |
cd19525 |
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; ... |
58-166 |
1.04e-04 |
|
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; it may be involved in DNA double-strand break repair via homologous recombination. Caenorhabditis elegans FIGL-1 is a nuclear protein and controls the mitotic progression in the germ line and mouse FIGL-1 may be involved in the control of male meiosis. human FIGL-1 has been shown to be a centrosome protein involved in ciliogenesis perhaps as a microtubule-severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410933 [Multi-domain] Cd Length: 186 Bit Score: 43.05 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKdraihQQRRTVLFVDEV--------- 121
Cdd:cd19525 58 ILLFGPPGTGKTLIGKCIASQSGATFFSISAssltskwVGEGEKMVRALFSVAR-----CKQPAVIFIDEIdsllsqrge 132
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1543019316 122 --HRFNKSQQDAFLPHIE------DGTIIFIGATteNPAFELNQAILSR--ARVY 166
Cdd:cd19525 133 geHESSRRIKTEFLVQLDgattssEDRILVVGAT--NRPQEIDEAARRRlvKRLY 185
|
|
| RecA-like_ATAD3-like |
cd19512 |
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase ... |
52-133 |
1.22e-04 |
|
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase domains; ATPase AAA-domain protein 3 (ATAD3) is a ubiquitously expressed mitochondrial protein involved in mitochondrial dynamics, DNA-nucleoid structural organization, cholesterol transport and steroidogenesis. The ATAD3 gene family in human comprises three paralog genes: ATAD3A, ATAD3B and ATAD3C. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410920 [Multi-domain] Cd Length: 150 Bit Score: 42.13 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 52 QGKVHSIIFWGPPGTGKTTIAEIIANHANADIERVSA--VTSGIKDIRQAIENAKDRAIHQQRRTVLFVDEVhrfnksqq 129
Cdd:cd19512 19 KGLYRNILFYGPPGTGKTLFAKKLALHSGMDYAIMTGgdVAPMGREGVTAIHKVFDWANTSRRGLLLFVDEA-------- 90
|
....
gi 1543019316 130 DAFL 133
Cdd:cd19512 91 DAFL 94
|
|
| RecA-like_ATAD1 |
cd19520 |
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ... |
58-162 |
1.39e-04 |
|
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase) is an ATPase that plays a critical role in regulating the surface expression of alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors, thereby regulating synaptic plasticity, learning and memory. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410928 [Multi-domain] Cd Length: 166 Bit Score: 42.41 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADI--ERVSAVTSGIKDIRQAIENAKDRAIHQQRRTVLFVDEVHRFNKSQQ------ 129
Cdd:cd19520 38 VLLYGPPGCGKTMLAKATAKEAGARFinLQVSSLTDKWYGESQKLVAAVFSLASKLQPSIIFIDEIDSFLRQRSstdhea 117
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1543019316 130 ------------DAFLPHIEDgTIIFIGATteNPAFELNQAILSR 162
Cdd:cd19520 118 tammkaefmslwDGLSTDGNC-RVIVMGAT--NRPQDLDEAILRR 159
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
24-76 |
1.52e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.21 E-value: 1.52e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1543019316 24 KLRPKSLAEYEGQEHILAkgmPLPLAIEQGKV-HSIIFWGPPGTGKTTIAEIIA 76
Cdd:PRK07764 8 RYRPATFAEVIGQEHVTE---PLSTALDSGRInHAYLFSGPRGCGKTSSARILA 58
|
|
| RecA-like_VPS4 |
cd19521 |
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein ... |
30-166 |
1.55e-04 |
|
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein sorting-associated protein 4 (Vps4) is believed to be involved in intracellular protein transport out of a prevacuolar endosomal compartment. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410929 [Multi-domain] Cd Length: 170 Bit Score: 42.16 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 30 LAEYEGQEHILAKGMPLPLAIEQGKVHS------IIFWGPPGTGKTTIAEIIANHANADIERVSA---VTSGIKDIRQAI 100
Cdd:cd19521 9 VAGLEGAKEALKEAVILPVKFPHLFTGNrkpwsgILLYGPPGTGKSYLAKAVATEANSTFFSVSSsdlVSKWMGESEKLV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 101 ENAKDRAiHQQRRTVLFVDEVHRFNKSQQDA-----------FLPHI------EDGtIIFIGATteNPAFELNQAILSR- 162
Cdd:cd19521 89 KQLFAMA-RENKPSIIFIDEVDSLCGTRGEGeseasrrikteLLVQMngvgndSQG-VLVLGAT--NIPWQLDSAIRRRf 164
|
....*
gi 1543019316 163 -ARVY 166
Cdd:cd19521 165 eKRIY 169
|
|
| RecA-like_CDC48_r2-like |
cd19511 |
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ... |
58-121 |
2.34e-04 |
|
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410919 [Multi-domain] Cd Length: 159 Bit Score: 41.50 E-value: 2.34e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKDRAihqqrRTVLFVDEV 121
Cdd:cd19511 30 VLLYGPPGCGKTLLAKALASEAGLNFISVKGpelfskyVGESERAVREIFQKARQAA-----PCIIFFDEI 95
|
|
| RecA-like_CDC48_r1-like |
cd19519 |
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP ... |
58-140 |
3.38e-04 |
|
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r1-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410927 [Multi-domain] Cd Length: 166 Bit Score: 41.27 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKDRAihqqrRTVLFVDEVhrfnksqqD 130
Cdd:cd19519 37 ILLYGPPGTGKTLIARAVANETGAFFFLINGpeimsklAGESESNLRKAFEEAEKNA-----PAIIFIDEI--------D 103
|
90
....*....|
gi 1543019316 131 AFLPHIEDGT 140
Cdd:cd19519 104 AIAPKREKTH 113
|
|
| DEXXQc_SF1 |
cd18043 |
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are ... |
57-79 |
4.22e-04 |
|
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are nucleic acid motor proteins that couple ATP hydrolysis to translocation along with the concomitant unwinding of DNA or RNA. This is central to many aspects of cellular DNA and RNA metabolism and accordingly, they are implicated in a wide range of nucleic acid processing events including DNA replication, recombination, and repair as well as many aspects of RNA metabolism. Superfamily 1 helicases are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350801 [Multi-domain] Cd Length: 127 Bit Score: 40.26 E-value: 4.22e-04
|
| T7SS_EccA |
TIGR03922 |
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the ... |
40-222 |
4.55e-04 |
|
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 188437 [Multi-domain] Cd Length: 557 Bit Score: 42.52 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 40 LAKGMPLPlaieqGKVHSIIFWGPPGTGKTTIAEIIAN---------HANA-DIERVSAVTSGIKDIRQAIENAKDRAIH 109
Cdd:TIGR03922 302 AERGLPVA-----QTSNHMLFAGPPGTGKTTIARVVAKiycglgvlrKPLVrEVSRADLIGQYIGESEAKTNEIIDSALG 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 110 QqrrtVLFVDEVHR-----------FNKSQQDAFLPHIED--GTIIFIGATTENPA---FELNQAILSR-ARVYTLKKLS 172
Cdd:TIGR03922 377 G----VLFLDEAYTlvetgygqkdpFGLEAIDTLLARMENdrDRLVVIGAGYRKDLdkfLEVNEGLRSRfTRVIEFPSYS 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1543019316 173 KSNLSnvlarAISYQTKTAQlDIVIDDEAKKQLIALA-----------NGDARRLLNLFEN 222
Cdd:TIGR03922 453 PDELV-----EIARRMATER-DSVLDDAAADALLEAAttlaqdttpdaNGDLRRGLDIAGN 507
|
|
| RecA-like_NVL_r2-like |
cd19530 |
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
58-139 |
6.95e-04 |
|
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410938 [Multi-domain] Cd Length: 161 Bit Score: 40.16 E-value: 6.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKDRAihqqrRTVLFVDEVhrfnksqqD 130
Cdd:cd19530 33 VLLYGPPGCGKTLLAKAVANESGANFISVKGpellnkyVGESERAVRQVFQRARASA-----PCVIFFDEV--------D 99
|
....*....
gi 1543019316 131 AFLPHIEDG 139
Cdd:cd19530 100 ALVPKRGDG 108
|
|
| RecA-like_CDC48_r2-like |
cd19528 |
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or ... |
58-128 |
6.97e-04 |
|
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP in metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the second of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r2-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410936 [Multi-domain] Cd Length: 161 Bit Score: 40.19 E-value: 6.97e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVSA---VTSGIKDIRQAIENAKDRAiHQQRRTVLFVDEVHRFNKSQ 128
Cdd:cd19528 30 VLFYGPPGCGKTLLAKAIANECQANFISVKGpelLTMWFGESEANVRDIFDKA-RAAAPCVLFFDELDSIAKAR 102
|
|
| RecA-like_spastin |
cd19524 |
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in ... |
58-166 |
8.81e-04 |
|
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in microtubule dynamics; it specifically recognizes and cuts microtubules that are polyglutamylated. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410932 [Multi-domain] Cd Length: 164 Bit Score: 39.83 E-value: 8.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKDRaihqqRRTVLFVDEV--------- 121
Cdd:cd19524 36 LLLFGPPGNGKTMLAKAVAAESNATFFNISAasltskyVGEGEKLVRALFAVAREL-----QPSIIFIDEVdsllserse 110
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1543019316 122 --HRFNKSQQDAFLPHIE------DGTIIFIGATteNPAFELNQAILSR--ARVY 166
Cdd:cd19524 111 geHEASRRLKTEFLIEFDgvqsngDDRVLVMGAT--NRPQELDDAVLRRftKRVY 163
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
48-140 |
1.03e-03 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 41.43 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 48 LAIEQGKvhSIIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKDRAihqqrRTVLFVDE 120
Cdd:TIGR01243 207 LGIEPPK--GVLLYGPPGTGKTLLAKAVANEAGAYFISINGpeimskyYGESEERLREIFKEAEENA-----PSIIFIDE 279
|
90 100
....*....|....*....|
gi 1543019316 121 VhrfnksqqDAFLPHIEDGT 140
Cdd:TIGR01243 280 I--------DAIAPKREEVT 291
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
48-190 |
1.52e-03 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 38.78 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 48 LAIEQGKVHSIIfwGPPGTGKTTIAEIIANHANAdiervsavTSGIKDIRQAIENAKDRAIHQQRRTVLFvdevhrfnks 127
Cdd:pfam00005 6 LTLNPGEILALV--GPNGAGKSTLLKLIAGLLSP--------TEGTILLDGQDLTDDERKSLRKEIGYVF---------- 65
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1543019316 128 QQDAFLPHIEDGTIIFIGATtenpaFELNQAILSRARVYTLkkLSKSNLSNVLARAISYQTKT 190
Cdd:pfam00005 66 QDPQLFPRLTVRENLRLGLL-----LKGLSKREKDARAEEA--LEKLGLGDLADRPVGERPGT 121
|
|
| RecA-like_PEX6_r2 |
cd19527 |
second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as ... |
38-121 |
1.78e-03 |
|
second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as Peroxin61)/PEX1 is a protein unfoldase; PEX6 and PEX1 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. This subfamily represents the second ATPase domain of PEX6. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410935 [Multi-domain] Cd Length: 160 Bit Score: 39.03 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 38 HILAKGMplplaieqGKVHSIIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKDraihq 110
Cdd:cd19527 17 ELFSSGL--------RKRSGILLYGPPGTGKTLLAKAIATECSLNFLSVKGpelinmyIGESEANVREVFQKARD----- 83
|
90
....*....|.
gi 1543019316 111 QRRTVLFVDEV 121
Cdd:cd19527 84 AKPCVIFFDEL 94
|
|
| DEXXQc_Helz-like |
cd18038 |
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and ... |
59-76 |
2.01e-03 |
|
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and similar proteins. Helicase with zinc finger (HELZ) acts as a helicase that plays a role in RNA metabolism during development. Moloney leukemia virus 10-like protein 1 (Mov10L1) binds Piwi-interacting RNA (piRNA) precursors to initiate piRNA processing. All are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350796 [Multi-domain] Cd Length: 229 Bit Score: 39.52 E-value: 2.01e-03
|
| CMPK |
cd02020 |
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine ... |
62-116 |
2.38e-03 |
|
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Pssm-ID: 238978 [Multi-domain] Cd Length: 147 Bit Score: 38.24 E-value: 2.38e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1543019316 62 GPPGTGKTTIAEIIANHANA--------DIERVSAVTS---GIKDIRQAIeNAKDRAIHQQRRTVL 116
Cdd:cd02020 6 GPAGSGKSTVAKLLAKKLGLpyldtggiRTEEVGKLASevaAIPEVRKAL-DERQRELAKKPGIVL 70
|
|
| ADK |
cd01428 |
Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine ... |
58-78 |
2.44e-03 |
|
Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Pssm-ID: 238713 [Multi-domain] Cd Length: 194 Bit Score: 39.14 E-value: 2.44e-03
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
22-162 |
2.59e-03 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 39.38 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 22 AAKLRP-KSLAEYE-GQEHILAKGMPLPLA----IEQGkvHSIIFWGPPGTGKTTIAEIIANHA-NADIeRVSAVTSG-- 92
Cdd:COG1484 62 AARFPAaKTLEDFDfDAQPGLDRRQILELAtldfIERG--ENLILLGPPGTGKTHLAIALGHEAcRAGY-RVRFTTAPdl 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 93 IKDIRQAI-ENAKDRAIHQQRRT-VLFVDEV--HRFNKSQQDAFLPHIED----GTIIFigatTENPAFE---------- 154
Cdd:COG1484 139 VNELKEARaDGRLERLLKRLAKVdLLILDELgyLPLDAEGAELLFELISDryerRSTII----TSNLPFSewgevfgdpt 214
|
....*...
gi 1543019316 155 LNQAILSR 162
Cdd:COG1484 215 LATAILDR 222
|
|
| PTZ00361 |
PTZ00361 |
26 proteosome regulatory subunit 4-like protein; Provisional |
58-121 |
2.64e-03 |
|
26 proteosome regulatory subunit 4-like protein; Provisional
Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 40.14 E-value: 2.64e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVsaVTS---------GIKDIRQAIENAKDRAihqqrRTVLFVDEV 121
Cdd:PTZ00361 220 VILYGPPGTGKTLLAKAVANETSATFLRV--VGSeliqkylgdGPKLVRELFRVAEENA-----PSIVFIDEI 285
|
|
| PRK14526 |
PRK14526 |
adenylate kinase; Provisional |
58-104 |
2.69e-03 |
|
adenylate kinase; Provisional
Pssm-ID: 172992 [Multi-domain] Cd Length: 211 Bit Score: 39.06 E-value: 2.69e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHAN------ADI--ERVSAVTSGIKDIRQAIENAK 104
Cdd:PRK14526 3 LVFLGPPGSGKGTIAKILSNELNyyhistGDLfrENILNSTPLGKEIKQIVENGQ 57
|
|
| PTZ00454 |
PTZ00454 |
26S protease regulatory subunit 6B-like protein; Provisional |
58-121 |
2.96e-03 |
|
26S protease regulatory subunit 6B-like protein; Provisional
Pssm-ID: 240423 [Multi-domain] Cd Length: 398 Bit Score: 39.75 E-value: 2.96e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVsaVTSG------------IKDI-RQAIENAKdraihqqrrTVLFVDEV 121
Cdd:PTZ00454 182 VLLYGPPGTGKTMLAKAVAHHTTATFIRV--VGSEfvqkylgegprmVRDVfRLARENAP---------SIIFIDEV 247
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
59-118 |
4.03e-03 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 38.49 E-value: 4.03e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1543019316 59 IFwGPPGTGKTTIAEIIANHANADI-------ERVSAVTSGIKDIRQAienakdRAIhqqRRTVLFV 118
Cdd:pfam00006 19 IF-GGSGVGKTVLAGMIARQASADVvvyaligERGREVREFIEELLGS------GAL---KRTVVVV 75
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
48-78 |
5.26e-03 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 38.47 E-value: 5.26e-03
10 20 30
....*....|....*....|....*....|.
gi 1543019316 48 LAIEQGKVHSIIfwGPPGTGKTTIAEIIANH 78
Cdd:CHL00131 28 LSINKGEIHAIM--GPNGSGKSTLSKVIAGH 56
|
|
| RecA-like_Yta7-like |
cd19517 |
ATPase domain of Saccharomyces cerevisiae Yta7 and similar ATPase domains; Saccharomyces ... |
58-87 |
6.49e-03 |
|
ATPase domain of Saccharomyces cerevisiae Yta7 and similar ATPase domains; Saccharomyces cerevisiae Yta7 is a chromatin-associated AAA-ATPase involved in regulation of chromatin dynamics. Its human ortholog ANCCA/ATAD2 transcriptionally activates pathways of malignancy in a broad range of cancers. The RecA-like_Yta7 subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410925 [Multi-domain] Cd Length: 170 Bit Score: 37.49 E-value: 6.49e-03
10 20 30
....*....|....*....|....*....|
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVS 87
Cdd:cd19517 37 VLFHGPPGTGKTLMARALAAECSKGGQKVS 66
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
24-82 |
6.53e-03 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 38.43 E-value: 6.53e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1543019316 24 KLRPKSLAEYEGQEHILAKgmpLPLAIEQGKVHSIIFWGPPGTGKTTIAEIIANHANAD 82
Cdd:PRK12402 8 KYRPALLEDILGQDEVVER---LSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD 63
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
58-121 |
6.61e-03 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 39.12 E-value: 6.61e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1543019316 58 IIFWGPPGTGKTTIAEIIANHANADIERVSA-------VTSGIKDIRQAIENAKdraihQQRRTVLFVDEV 121
Cdd:TIGR01243 490 VLLFGPPGTGKTLLAKAVATESGANFIAVRGpeilskwVGESEKAIREIFRKAR-----QAAPAIIFFDEI 555
|
|
| RecA-like_NSF-SEC18_r1-like |
cd19504 |
first of two ATPase domains of NSF and SEC18, and similar ATPase domains; ... |
6-81 |
6.69e-03 |
|
first of two ATPase domains of NSF and SEC18, and similar ATPase domains; N-ethylmaleimide-sensitive factor (NSF) and Saccharomyces cerevisiae Vesicular-fusion protein Sec18, key factors for eukaryotic trafficking, are ATPases and SNARE disassembly chaperones. NSF/Sec18 activate or prime SNAREs, the terminal catalysts of membrane fusion. Sec18/NSF associates with SNARE complexes through binding Sec17/alpha-SNAP. Sec18 has an N-terminal cap domain and two nucleotide-binding domains (D1 and D2) which form the two rings of the hexameric complex. The hydrolysis of ATP by D1 generates most of the energy necessary to disassemble inactive SNARE bundles, while the D2 ring binds ATP to stabilize the homohexamer. This subfamily includes the first (D1) ATPase domain of NSF/Sec18, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410912 [Multi-domain] Cd Length: 177 Bit Score: 37.47 E-value: 6.69e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1543019316 6 GSLDLGFAqdDSFK-PLAAKLRPKSLAEYEGQEHIlaKGMPLplaieqgkvhsiifWGPPGTGKTTIAEIIANHANA 81
Cdd:cd19504 3 GGLDKEFS--DIFRrAFASRVFPPEIVEQLGCKHV--KGILL--------------YGPPGTGKTLMARQIGKMLNA 61
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ... |
57-141 |
7.97e-03 |
|
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400187 [Multi-domain] Cd Length: 168 Bit Score: 37.17 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1543019316 57 SIIFWGPPGTGKTTIAEIIANHANADIERVSavtsgIKDIRQ-AIENAKDR-------------------AIHQQRRTVL 116
Cdd:pfam07724 5 SFLFLGPTGVGKTELAKALAELLFGDERALI-----RIDMSEyMEEHSVSRligappgyvgyeeggqlteAVRRKPYSIV 79
|
90 100
....*....|....*....|....*
gi 1543019316 117 FVDEVHRFNKSQQDAFLPHIEDGTI 141
Cdd:pfam07724 80 LIDEIEKAHPGVQNDLLQILEGGTL 104
|
|
| |
