choice-of-anchor I domain; This domain is found in the N-terminal third of the alkaline ...
456-918
0e+00
choice-of-anchor I domain; This domain is found in the N-terminal third of the alkaline phosphatase PhoA of Synechocystis sp. PCC 6803 (see AGF50645.1), upstream of the region presumed to have phosphatase activity. It is found in a number of other cyanobacterial proteins called PhoA, although those annotations may be incorrect. Proteins with this domain include a number with the PEP-CTERM protein-sorting domain, but also a number with the LPXTG protein-sorting domain, making this a choice-of-anchor domain, that is, a new homology domain of what was previously "dark matter" (that is, lacking any HMM), whose members include proteins targeted for covalent attachment at the cell surface by at least two different protein-sorting systems.
The actual alignment was detected with superfamily member NF038117:
Pssm-ID: 468360 [Multi-domain] Cd Length: 461 Bit Score: 536.83 E-value: 0e+00
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
947-1009
4.09e-07
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.
:
Pssm-ID: 275036 [Multi-domain] Cd Length: 72 Bit Score: 48.17 E-value: 4.09e-07
choice-of-anchor I domain; This domain is found in the N-terminal third of the alkaline ...
456-918
0e+00
choice-of-anchor I domain; This domain is found in the N-terminal third of the alkaline phosphatase PhoA of Synechocystis sp. PCC 6803 (see AGF50645.1), upstream of the region presumed to have phosphatase activity. It is found in a number of other cyanobacterial proteins called PhoA, although those annotations may be incorrect. Proteins with this domain include a number with the PEP-CTERM protein-sorting domain, but also a number with the LPXTG protein-sorting domain, making this a choice-of-anchor domain, that is, a new homology domain of what was previously "dark matter" (that is, lacking any HMM), whose members include proteins targeted for covalent attachment at the cell surface by at least two different protein-sorting systems.
Pssm-ID: 468360 [Multi-domain] Cd Length: 461 Bit Score: 536.83 E-value: 0e+00
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
947-1009
4.09e-07
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.
Pssm-ID: 275036 [Multi-domain] Cd Length: 72 Bit Score: 48.17 E-value: 4.09e-07
T9SS-dependent M36 family metallopeptidase; Members of this family have an M36 family ...
941-997
1.07e-04
T9SS-dependent M36 family metallopeptidase; Members of this family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal T9SS type A sorting domain (see TIGR04131).
Pssm-ID: 468356 [Multi-domain] Cd Length: 868 Bit Score: 46.18 E-value: 1.07e-04
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
947-997
1.27e-04
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber have on average twenty or more copies of this C-terminal domain, associated with sorting to the outer membrane and covalent modification. This domain targets proteins to type IX secretion systems and is secreted then cleaved off by a C-terminal signal peptidease. Based on similarity to other families it is likely that this domain adopts an immunoglobulin like fold.
Pssm-ID: 436869 [Multi-domain] Cd Length: 75 Bit Score: 41.44 E-value: 1.27e-04
choice-of-anchor I domain; This domain is found in the N-terminal third of the alkaline ...
456-918
0e+00
choice-of-anchor I domain; This domain is found in the N-terminal third of the alkaline phosphatase PhoA of Synechocystis sp. PCC 6803 (see AGF50645.1), upstream of the region presumed to have phosphatase activity. It is found in a number of other cyanobacterial proteins called PhoA, although those annotations may be incorrect. Proteins with this domain include a number with the PEP-CTERM protein-sorting domain, but also a number with the LPXTG protein-sorting domain, making this a choice-of-anchor domain, that is, a new homology domain of what was previously "dark matter" (that is, lacking any HMM), whose members include proteins targeted for covalent attachment at the cell surface by at least two different protein-sorting systems.
Pssm-ID: 468360 [Multi-domain] Cd Length: 461 Bit Score: 536.83 E-value: 0e+00
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
947-1009
4.09e-07
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.
Pssm-ID: 275036 [Multi-domain] Cd Length: 72 Bit Score: 48.17 E-value: 4.09e-07
T9SS-dependent M36 family metallopeptidase; Members of this family have an M36 family ...
941-997
1.07e-04
T9SS-dependent M36 family metallopeptidase; Members of this family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal T9SS type A sorting domain (see TIGR04131).
Pssm-ID: 468356 [Multi-domain] Cd Length: 868 Bit Score: 46.18 E-value: 1.07e-04
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
947-997
1.27e-04
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber have on average twenty or more copies of this C-terminal domain, associated with sorting to the outer membrane and covalent modification. This domain targets proteins to type IX secretion systems and is secreted then cleaved off by a C-terminal signal peptidease. Based on similarity to other families it is likely that this domain adopts an immunoglobulin like fold.
Pssm-ID: 436869 [Multi-domain] Cd Length: 75 Bit Score: 41.44 E-value: 1.27e-04
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
Click on the domain model's accession number to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.
To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page,
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
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(labeled illustration) Four types of hits can be shown, as available,
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Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool
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