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Conserved domains on  [gi|1519527998|gb|AZA67451|]
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hypothetical protein EG345_24195 [Chryseobacterium carnipullorum]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HU-CCDC81_bac_1 super family cl40292
CCDC81-like prokaryotic HU domain 1; First of two HU domains found in bacterial proteins ...
17-50 3.36e-03

CCDC81-like prokaryotic HU domain 1; First of two HU domains found in bacterial proteins typically fused to a C-terminal transmembrane helix and an extracellular peptidoglycan-binding domain. The HU domains in many of these proteins are predicted to function in tethering the nucleoid to the cell envelope.


The actual alignment was detected with superfamily member pfam18174:

Pssm-ID: 436327  Cd Length: 59  Bit Score: 34.80  E-value: 3.36e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1519527998  17 VTVPSFGMFSLKNSKAIINSENGSILPPASEIVF 50
Cdd:pfam18174  18 VIVPGFGGFIAHYVPARYDEDDNLFLPPSRTIGF 51
 
Name Accession Description Interval E-value
HU-CCDC81_bac_1 pfam18174
CCDC81-like prokaryotic HU domain 1; First of two HU domains found in bacterial proteins ...
17-50 3.36e-03

CCDC81-like prokaryotic HU domain 1; First of two HU domains found in bacterial proteins typically fused to a C-terminal transmembrane helix and an extracellular peptidoglycan-binding domain. The HU domains in many of these proteins are predicted to function in tethering the nucleoid to the cell envelope.


Pssm-ID: 436327  Cd Length: 59  Bit Score: 34.80  E-value: 3.36e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1519527998  17 VTVPSFGMFSLKNSKAIINSENGSILPPASEIVF 50
Cdd:pfam18174  18 VIVPGFGGFIAHYVPARYDEDDNLFLPPSRTIGF 51
 
Name Accession Description Interval E-value
HU-CCDC81_bac_1 pfam18174
CCDC81-like prokaryotic HU domain 1; First of two HU domains found in bacterial proteins ...
17-50 3.36e-03

CCDC81-like prokaryotic HU domain 1; First of two HU domains found in bacterial proteins typically fused to a C-terminal transmembrane helix and an extracellular peptidoglycan-binding domain. The HU domains in many of these proteins are predicted to function in tethering the nucleoid to the cell envelope.


Pssm-ID: 436327  Cd Length: 59  Bit Score: 34.80  E-value: 3.36e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1519527998  17 VTVPSFGMFSLKNSKAIINSENGSILPPASEIVF 50
Cdd:pfam18174  18 VIVPGFGGFIAHYVPARYDEDDNLFLPPSRTIGF 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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