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Conserved domains on  [gi|1519520480|gb|AZA48167|]
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TraR/DksA family transcriptional regulator [Chryseobacterium carnipullorum]

Protein Classification

TraR/DksA family transcriptional regulator( domain architecture ID 10004441)

TraR/DksA family transcriptional regulator similar to Bacillus subtilis general stress protein 16O (GSP16O) and Agrobacterium tumefaciens DnaK suppressor protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DksA COG1734
RNA polymerase-binding transcription factor DksA [Transcription];
8-125 6.01e-31

RNA polymerase-binding transcription factor DksA [Transcription];


:

Pssm-ID: 441340  Cd Length: 119  Bit Score: 106.53  E-value: 6.01e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519520480   8 YNDSDLQEFKAIIKEKIEKAEKDLQLIREsfindQNNGTDDTSPTFKAFEEGAETLSKEQNSILAGRQEKFVRDLKNALI 87
Cdd:COG1734     1 MSDEQLEEFRERLLEEREELLEELEETEE-----ELLSGDLSAYDPDPADRATEEEERELELALRDRERKLLRKIDAALE 75

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1519520480  88 RIENKTYGVCRVTGKLIPKERLLAVPHATLSIEAKNMQ 125
Cdd:COG1734    76 RIEEGTYGICEECGEPIPLERLEARPTATLCIECKERQ 113
 
Name Accession Description Interval E-value
DksA COG1734
RNA polymerase-binding transcription factor DksA [Transcription];
8-125 6.01e-31

RNA polymerase-binding transcription factor DksA [Transcription];


Pssm-ID: 441340  Cd Length: 119  Bit Score: 106.53  E-value: 6.01e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519520480   8 YNDSDLQEFKAIIKEKIEKAEKDLQLIREsfindQNNGTDDTSPTFKAFEEGAETLSKEQNSILAGRQEKFVRDLKNALI 87
Cdd:COG1734     1 MSDEQLEEFRERLLEEREELLEELEETEE-----ELLSGDLSAYDPDPADRATEEEERELELALRDRERKLLRKIDAALE 75

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1519520480  88 RIENKTYGVCRVTGKLIPKERLLAVPHATLSIEAKNMQ 125
Cdd:COG1734    76 RIEEGTYGICEECGEPIPLERLEARPTATLCIECKERQ 113
bacill_yteA TIGR02890
regulatory protein, yteA family; Members of this predicted regulatory protein are found only ...
 57-123 8.86e-12

regulatory protein, yteA family; Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to Pfam family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. Smaller proteins from the proteobacteria with just the N-terminal domain, including DksA and DksA2 are RNA polymerase-binding regulatory proteins even if the Zn-binding site is not conserved. [Unknown function, General]


Pssm-ID: 274340  Cd Length: 159  Bit Score: 58.51  E-value: 8.86e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1519520480  57 EEGAETLSKEQNSILAGRQEKFVRDLKNALIRIENKTYGVCRVTGKLIPKERLLAVPHATLSIEAKN 123
Cdd:TIGR02890  49 DLATELYEREKDIALREHEERELREIEHALQKIENGTYGICEVCGKPIPYERLEAIPTATTCVECQN 115
zf-dskA_traR pfam01258
Prokaryotic dksA/traR C4-type zinc finger;
92-123 8.39e-07

Prokaryotic dksA/traR C4-type zinc finger;


Pssm-ID: 426162 [Multi-domain]  Cd Length: 36  Bit Score: 42.66  E-value: 8.39e-07
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1519520480  92 KTYGVCRVTGKLIPKERLLAVPHATLSIEAKN 123
Cdd:pfam01258   1 GSYGSCEDCGEPIPEARLRAVPGARLCIECQE 32
DksA_like NF033459
RNA polymerase-binding protein DksA;
11-120 1.98e-06

RNA polymerase-binding protein DksA;


Pssm-ID: 380301  Cd Length: 113  Bit Score: 43.37  E-value: 1.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519520480  11 SDLQEFKAIIKEKIEKAEKDLQLIRESFINDQNNGTDDtsptfkafeEG----AETLSKEQNSILAgRQEKFVRDLKNAL 86
Cdd:NF033459    1 NELKEFKNILLERKEQILKNINSSSNEIEELRNSELND---------EGdyasISTDSMIEYAISN-QQKKELNEIEEAL 70

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1519520480  87 IRIENKTYGVCRVTGKLIPKERLLAVPHATLSIE 120
Cdd:NF033459   71 KKIKNGTYGICEMCEEPIGIERLKVKPHAKYCIT 104
 
Name Accession Description Interval E-value
DksA COG1734
RNA polymerase-binding transcription factor DksA [Transcription];
8-125 6.01e-31

RNA polymerase-binding transcription factor DksA [Transcription];


Pssm-ID: 441340  Cd Length: 119  Bit Score: 106.53  E-value: 6.01e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519520480   8 YNDSDLQEFKAIIKEKIEKAEKDLQLIREsfindQNNGTDDTSPTFKAFEEGAETLSKEQNSILAGRQEKFVRDLKNALI 87
Cdd:COG1734     1 MSDEQLEEFRERLLEEREELLEELEETEE-----ELLSGDLSAYDPDPADRATEEEERELELALRDRERKLLRKIDAALE 75

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1519520480  88 RIENKTYGVCRVTGKLIPKERLLAVPHATLSIEAKNMQ 125
Cdd:COG1734    76 RIEEGTYGICEECGEPIPLERLEARPTATLCIECKERQ 113
bacill_yteA TIGR02890
regulatory protein, yteA family; Members of this predicted regulatory protein are found only ...
 57-123 8.86e-12

regulatory protein, yteA family; Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to Pfam family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. Smaller proteins from the proteobacteria with just the N-terminal domain, including DksA and DksA2 are RNA polymerase-binding regulatory proteins even if the Zn-binding site is not conserved. [Unknown function, General]


Pssm-ID: 274340  Cd Length: 159  Bit Score: 58.51  E-value: 8.86e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1519520480  57 EEGAETLSKEQNSILAGRQEKFVRDLKNALIRIENKTYGVCRVTGKLIPKERLLAVPHATLSIEAKN 123
Cdd:TIGR02890  49 DLATELYEREKDIALREHEERELREIEHALQKIENGTYGICEVCGKPIPYERLEAIPTATTCVECQN 115
zf-dskA_traR pfam01258
Prokaryotic dksA/traR C4-type zinc finger;
92-123 8.39e-07

Prokaryotic dksA/traR C4-type zinc finger;


Pssm-ID: 426162 [Multi-domain]  Cd Length: 36  Bit Score: 42.66  E-value: 8.39e-07
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1519520480  92 KTYGVCRVTGKLIPKERLLAVPHATLSIEAKN 123
Cdd:pfam01258   1 GSYGSCEDCGEPIPEARLRAVPGARLCIECQE 32
DksA_like NF033459
RNA polymerase-binding protein DksA;
11-120 1.98e-06

RNA polymerase-binding protein DksA;


Pssm-ID: 380301  Cd Length: 113  Bit Score: 43.37  E-value: 1.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519520480  11 SDLQEFKAIIKEKIEKAEKDLQLIRESFINDQNNGTDDtsptfkafeEG----AETLSKEQNSILAgRQEKFVRDLKNAL 86
Cdd:NF033459    1 NELKEFKNILLERKEQILKNINSSSNEIEELRNSELND---------EGdyasISTDSMIEYAISN-QQKKELNEIEEAL 70

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1519520480  87 IRIENKTYGVCRVTGKLIPKERLLAVPHATLSIE 120
Cdd:NF033459   71 KKIKNGTYGICEMCEEPIGIERLKVKPHAKYCIT 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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